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Owing to its size and complexity, the genome of modern sugarcane has never been previously assembled in its entirety, which leaves it as one of the last remaining major crop species without a reference genome. The newly completed polyploid assembly of an archetypal modern hybrid reveals the complexities of sugarcane’s genetic past, and presents new opportunities for the researchers and breeders invested in its future.
The functions of a small family of non-secreted peptides, originally identified as critical communicators of the plant’s iron status, have expanded. The involvement of these effectors in disparate signalling cascades underlines the pivotal role peptides have in responses to the environment.
Plant species diversity declines from tropical to temperate latitudes. Local neighbourhood interactions among species that favour heterospecifics over conspecifics may have a role in shaping this latitudinal diversity gradient, but perhaps not as traditionally thought.
BZR/BES transcription factors are widely recognized as mediators of brassinosteroid (BR)-responsive gene expression in seed plants, but details of how they act in species that lack BR perception are unclear. A study now uncovers an ancient mission of a BZR/BES transcription factor in sexual organ development in the liverwort Marchantia polymorpha.
Compartmentalization of specialized compounds in glandular trichomes is essential for plant protection against stresses and attraction of pollinators. This compartmentalization is achieved by the establishment of a lignin-based apoplastic barrier named ‘neck strip’, which is present in trichomes of diverse plant species.
Rhizosphere microbiomes are shaped by both the environment and the host. A recent study of the maize microbiome reveals how plants recruit a specific microbiome to alleviate abiotic stress, and provides clues for precision microbiome engineering in agriculture.
Two studies report the use of paternal haploids to enable one-step transfer of cytoplasmic male sterility in maize and broccoli, which resolves a key technical bottleneck in hybrid crop breeding.
Cell edges are part of a coordinate system used by the cell to direct three-dimensional growth in an organized manner. They emerge as signalling hubs with unique composition, capable of sensing mechanical stresses derived from neighbouring cells, to negotiate and harmonize individual cellular growth rates, therefore avoiding mechanical conflict.
Plants regulate their microbiota to cope with diverse stresses. A recent study shows that rice maintains homeostasis of its phyllosphere microbiome through a secondary metabolite biosynthetic gene, which offers potential for harnessing microbiome-shaping genes in disease-resistance breeding.
The effect of DNA methylation on gene expression has been known for decades. However, the mechanism by which DNA methylation functions to repress transcription has remained a major question in the field. Wang et al. now narrow this gap through their examination of the methylation binding protein MBD2 and expose how DNA methylation is read upstream of transcriptional repression.
The Lycopodium alkaloids represent a valuable source of neuroactive compounds. The biosynthesis of these specialized metabolites is now shown to involve three α-carbonic anhydrase-like enzymes that are responsible for constructing the key carbon–carbon bonds within their distinctive polycyclic alkaloid structures.
In angiosperms, the proliferation and differentiation of egg and central cells need to be repressed before fertilization. Autonomous endosperm development has been observed and well-studied in Arabidopsis mutants of FERTILIZATION INDEPENDENT SEED (FIS)-class POLYCOMB REPRESSIVE COMPLEX 2 (PRC2), but how defects of PRC2 components affect embryo development remains unclear. Wu et al. now describe an essential clue for understanding parthenogenetic embryogenesis from the rice double mutant osfie1 osfie2.
By assembling a high-quality carrot reference genome and resequencing 630 accessions, a study by Coe et al. reveals the transformative journey of carrot from wild progenitor to modern cultivar and the concomitant accumulation of carotenoids in its taproot.
Single-nucleus transcriptomic analysis of Medicago roots reveals dynamic cell-specific responses to the Nod factor — a bacterially secreted chito-lipopolysaccharide with a key role in the root nodule symbiosis between legumes and rhizobia — and identifies the receptor-like kinase FERONIA as a phosphorylation target of the Nod factor receptor LYK3, which together function to control nodule formation and bacterial infection.
To control the movement of water and nutrients, vascular plants seal the paracellular space between adjacent endodermal cells with a tight junction-like complex comprising the Casparian strip and Casparian strip membrane domain. In rice, GAPLESS proteins mediate the attachment of these two components and enable nutrient homeostasis.
The inclusion of retrotransposon long terminal repeats — and of other repeated sequences — enhances transfer DNA copy numbers in plant cells during transformation. Gene editing and homologous recombination-mediated gene targeting can therefore be improved by these means: however, the mechanism remains a mystery.
Phenolic acids, such as salicylic acid, are part of a mechanism that helps to suppress the growth of neighbouring plants. New work shows that phenolic acids inhibit global translation by promoting the sequestration of ribosomal subunits into stress granules.
Highly repetitive regions such as centromeres bedevilled genome assembly for decades until a recent flurry of gapless genome publications. Attention is now focused on interpreting the chromatin within these most repetitive regions, as illustrated by a new paper on simultaneously measuring open chromatin and DNA methylation using long-read sequencing.