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| Open AccessFirst neurotranscriptome of adults Tambaquis (Colossoma macropomum) with characterization and differential expression between males and females
- Josy Miranda
- , Ivana Veneza
- & Grazielle Evangelista-Gomes
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| Open AccessA comprehensive DNA barcoding of Indian freshwater fishes of the Indus River system, Beas
- Sonakshi Modeel
- , Ram Krishan Negi
- & Tarana Negi
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Article
| Open AccessIllumina reads correction: evaluation and improvements
- Maciej Długosz
- & Sebastian Deorowicz
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Article
| Open AccessTranscriptional characterization of iPSC-derived microglia as a model for therapeutic development in neurodegeneration
- Gokul Ramaswami
- , Yeliz Yuva-Aydemir
- & David Bumcrot
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| Open AccessA phased genome assembly of a Colombian Trypanosoma cruzi TcI strain and the evolution of gene families
- Maria Camila Hoyos Sanchez
- , Hader Sebastian Ospina Zapata
- & Jorge Duitama
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| Open AccessDetection of DNA methylation signatures through the lens of genomic imprinting
- Jean-Noël Hubert
- , Nathalie Iannuccelli
- & Julie Demars
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| Open AccessCell cycle specific, differentially tagged ribosomal proteins to measure phase specific transcriptomes from asynchronously cycling cells
- Jesse D. Cochran
- , Tess A. Leathers
- & Matthew J. Wolf
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| Open AccessGlobal characterization of biosynthetic gene clusters in non-model eukaryotes using domain architectures
- Taehyung Kwon
- & Blake T. Hovde
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| Open AccessEvolution of a plant sex chromosome driven by expanding pericentromeric recombination suppression
- Dmitry A. Filatov
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| Open AccessGenomic prediction in multi-environment trials in maize using statistical and machine learning methods
- Cynthia Aparecida Valiati Barreto
- , Kaio Olimpio das Graças Dias
- & Moysés Nascimento
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| Open AccessStrong selection signatures for Aleutian disease tolerance acting on novel candidate genes linked to immune and cellular responses in American mink (Neogale vison)
- Seyed Milad Vahedi
- , Siavash Salek Ardestani
- & K. Fraser Clark
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| Open AccessA cost-effectiveness analysis of an integrated clinical-radiogenomic screening program for the identification of BRCA 1/2 carriers (e-PROBE study)
- A. Di Pilla
- , C. Nero
- & G. Scambia
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| Open AccessContribution of uniparental disomy to fetal growth restriction: a whole-exome sequencing series in a prenatal setting
- Mengmeng Li
- , Na Hao
- & Xiya Zhou
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| Open AccessDiscovering biomarkers associated and predicting cardiovascular disease with high accuracy using a novel nexus of machine learning techniques for precision medicine
- William DeGroat
- , Habiba Abdelhalim
- & Zeeshan Ahmed
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| Open AccessCharacteristics of Amorphophallus konjac as indicated by its genome
- Lifang Li
- , Min Yang
- & Lei Yu
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| Open AccessTWAS revealed significant causal loci for milk production and its composition in Murrah buffaloes
- Supriya Chhotaray
- , Vikas Vohra
- & Gopal Gowane
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| Open AccessCeratobasidium sp. is associated with cassava witches’ broom disease, a re-emerging threat to cassava cultivation in Southeast Asia
- Ana M. Leiva
- , Juan M. Pardo
- & Wilmer J. Cuellar
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| Open AccessIntegrated omics analysis of coronary artery calcifications and myocardial infarction: the Framingham Heart Study
- Amalie Lykkemark Møller
- , Ramachandran S. Vasan
- & Honghuang Lin
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Editorial
| Open AccessGenomics of extreme environments: unveiling the secrets of survival
Life on Earth has displayed remarkable adaptability to the harshest environments, spanning polar regions, scorching deserts, abyssal oceans, lightless caves, noxious lakes, boiling hot springs, and nuclear waste sites. These resilient organisms, known as extremophiles or polyextremophiles, owe their survival due to their unique genetic adaptations. This collection, titled ‘Genomics of Extreme Environments’, comprises several articles published in the esteemed journal Scientific Reports. Each article within this collection investigated genetic signature and adaptation in different extreme environments, including the cold polar region, arid desert, oxygen-deprived Tibetan mountains and others. These studies provide invaluable understanding of how life thrives and evolves under extreme conditions, shedding light on genetic mechanisms and adaptation strategies.
- Kian Mau Goh
- , María-Isabel González-Siso
- & Rajesh K. Sani
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| Open AccessUrinary exosomal miRNA signature of IgA nephropathy: a case–control study
- Mythri Shankar
- , Aditya Shetty
- & Karthik Tennankore
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| Open AccessIntegration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human
- Svetlana A. Romanenko
- , Sergei F. Kliver
- & Alexander S. Graphodatsky
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| Open AccessBenefit of using interaction effects for the analysis of high-dimensional time-response or dose-response data for two-group comparisons
- Julia C. Duda
- , Carolin Drenda
- & Franziska Kappenberg
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| Open AccessCoexistent ARID1A-PIK3CA mutations are associated with immune-related pathways in luminal breast cancer
- Liat Anabel Sinberger
- , Tamar Zahavi
- & Mali Salmon‐Divon
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Article
| Open AccessGenetic evidence for causal effects of leukocyte counts on risk for rheumatoid arthritis
- Jin-Mei You
- , Yao-Chen Zhang
- & Sheng-Xiao Zhang
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Article
| Open AccessDe novo transcriptome assembly of Dalbergia sissoo Roxb. (Fabaceae) under Botryodiplodia theobromae-induced dieback disease
- Ummul Buneen Zafar
- , Muhammad Shahzaib
- & Iqrar Ahmad Rana
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Article
| Open AccessUnravelling the genome of the brackish water malaria vector Anopheles aquasalis
- Rodrigo Maciel Alencar
- , Cesar Camilo Prado Sepulveda
- & Leonardo Barbosa Koerich
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| Open AccessGenetic determinants of severe COVID-19 in young Asian and Middle Eastern patients: a case series
- Beshr Abdulaziz Badla
- , Mohamed Samer Hanifa
- & Ahmad Abou Tayoun
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| Open AccessNew insights into the genetic predisposition of brucellosis and its effect on the gut and vaginal microbiota in goats
- Ahmed M. Sallam
- , Ibrahim Abou-souliman
- & Alaa Emara Rabee
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Article
| Open AccessPrediction of alternative pre-mRNA splicing outcomes
- Rayan Najjar
- & Tomas Mustelin
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| Open AccessComparative genomics and genome-wide SNPs of endangered Eld’s deer provide breeder selection for inbreeding avoidance
- Vichayanee Pumpitakkul
- , Wanna Chetruengchai
- & Vorasuk Shotelersuk
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Article
| Open AccessGenomics of Plasmodium vivax in Colombia reveals evidence of local bottle-necking and inter-country connectivity in the Americas
- Edwin Sutanto
- , Zuleima Pava
- & Sarah Auburn
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Article
| Open AccessCRISPR-broad: combined design of multi-targeting gRNAs and broad, multiplex target finding
- Alaguraj Veluchamy
- , Kaian Teles
- & Wolfgang Fischle
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Article
| Open AccessDevelopment of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance
- Bram Bloemen
- , Mathieu Gand
- & Sigrid C. J. De Keersmaecker
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| Open AccessCharacterization of the genomic alterations in poorly differentiated thyroid cancer
- Yeeun Lee
- , SeongRyeol Moon
- & Yoo Seung Chung
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| Open AccessNaturally occurring canine laminopathy leading to a dilated and fibrosing cardiomyopathy in the Nova Scotia Duck Tolling Retriever
- Danika L. Bannasch
- , Danielle T. Oertle
- & Nikhil Joshi
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| Open AccessComparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple
- Ashley G. Yow
- , Kanjana Laosuntisuk
- & Massimo Iorizzo
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| Open AccessBiological and substitute parents in Beaker period adult–child graves
- Nicoletta Zedda
- , Katie Meheux
- & Maxime Brami
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Article
| Open AccessUniversal primers for rift valley fever virus whole-genome sequencing
- Kwan Woo Kim
- , Banseok Lee
- & Hana Yi
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Article
| Open AccessDiet-induced rewiring of the Wnt gene regulatory network connects aberrant splicing to fatty liver and liver cancer in DIAMOND mice
- Ana López-Pérez
- , Silvia Remeseiro
- & Andreas Hörnblad
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| Open AccessGWAS for the composite traits of hematuria and albuminuria
- Sarah A. Gagliano Taliun
- , Ian R. Dinsmore
- & Moumita Barua
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Article
| Open AccessSHaploseek is a sequencing-only, high-resolution method for comprehensive preimplantation genetic testing
- Daniel Backenroth
- , Gheona Altarescu
- & David A. Zeevi
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| Open AccessThe crosstalk between glomerular endothelial cells and podocytes controls their responses to metabolic stimuli in diabetic nephropathy
- Michael Albrecht
- , Carsten Sticht
- & Boyan K. Garvalov
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Article
| Open AccessThe complete chloroplast genome of Cicer reticulatum and comparative analysis against relative Cicer species
- Ezgi Mehmetoğlu
- , Yasin Kaymaz
- & Muhammed Bahattin Tanyolaç
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Article
| Open AccessMolecular markers of type II alveolar epithelial cells in acute lung injury by bioinformatics analysis
- Xiaoting Yang
- , Jing Wang
- & Wei Liu
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| Open AccessGenetic mapping of quantitative trait loci associated with drought tolerance in chickpea (Cicer arietinum L.)
- Yashwant K. Yadava
- , Pooja Chaudhary
- & P. K. Jain
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| Open AccessNovel Alzheimer’s disease genes and epistasis identified using machine learning GWAS platform
- Mischa Lundberg
- , Letitia M. F. Sng
- & Natalie A. Twine
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| Open AccessConsistent effects of the genetics of happiness across the lifespan and ancestries in multiple cohorts
- Joey Ward
- , Laura M. Lyall
- & Jill P. Pell
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| Open AccessGenome-wide identification of candidate copy number polymorphism genes associated with complex traits of Tibetan-sheep
- Dehong Tian
- , De Sun
- & Kai Zhao
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| Open AccessMixed infections in genotypic drug-resistant Mycobacterium tuberculosis
- Linfeng Wang
- , Susana Campino
- & Taane G. Clark