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A chromosome-scale fishing cat reference genome for the evaluation of potential germline risk variants
- Rachel A. Carroll
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Illumina reads correction: evaluation and improvements
- Maciej Długosz
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A multiplexed RT-PCR assay for nanopore whole genome sequencing of Tilapia lake virus (TiLV)
- Jérôme Delamare-Deboutteville
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Hybrid de novo genome assembly and comparative genomics of three different isolates of Gnomoniopsis castaneae
- Silvia Turco
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Reference-free lossless compression of nanopore sequencing reads using an approximate assembly approach
- Qingxi Meng
- , Shubham Chandak
- & Tsachy Weissman
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De novo transcriptome assembly from the nodal root growth zone of hydrated and water-deficit stressed maize inbred line FR697
- Sidharth Sen
- , Shannon K. King
- & Trupti Joshi
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Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing
- François Stüder
- , Jean-Louis Petit
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Phylogenetic and genetic characterization of Treponema pallidum strains from syphilis patients in Japan by whole-genome sequence analysis from global perspectives
- Shingo Nishiki
- , Kenichi Lee
- & Makoto Ohnishi
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Terabase-scale metagenome coassembly with MetaHipMer
- Steven Hofmeyr
- , Rob Egan
- & Katherine Yelick
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A comparative chemogenic analysis for predicting Drug-Target Pair via Machine Learning Approaches
- Aman Chandra Kaushik
- , Aamir Mehmood
- & Dong-Qing Wei
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Challenges and opportunities for strain verification by whole-genome sequencing
- Jenna E. Gallegos
- , Sergei Hayrynen
- & Jean Peccoud
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High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers
- José Arturo Molina-Mora
- , Rebeca Campos-Sánchez
- & Fernando García
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Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei
- Merce Montoliu-Nerin
- , Marisol Sánchez-García
- & Anna Rosling
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Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes
- Thiago de Jesus Sousa
- , Doglas Parise
- & Vasco Azevedo
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Differential mechanisms of tolerance to extreme environmental conditions in tardigrades
- Dido Carrero
- , José G. Pérez-Silva
- & Carlos López-Otín
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Discovery of 33mer in chromosome 21 – the largest alpha satellite higher order repeat unit among all human somatic chromosomes
- Matko Glunčić
- , Ines Vlahović
- & Vladimir Paar
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Application of Chaotic Laws to Improve Haplotype Assembly Using Chaos Game Representation
- Mohammad Hossein Olyaee
- , Alireza Khanteymoori
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Comparative genomic analysis of monosporidial and monoteliosporic cultures for unraveling the complexity of molecular pathogenesis of Tilletia indica pathogen of wheat
- Pallavi Mishra
- , Ranjeet Maurya
- & Anil Kumar
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ICE SXT vs. ICESh95: Co-existence of Integrative and Conjugative Elements and Competition for a New Host
- Gisela Parmeciano DI Noto
- , Andrés Iriarte
- & Cecilia Quiroga
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Α Quantum Pattern Recognition Method for Improving Pairwise Sequence Alignment
- Konstantinos Prousalis
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Mitochondrial and chloroplast genomes provide insights into the evolutionary origins of quinoa (Chenopodium quinoa Willd.)
- Peter J. Maughan
- , Lindsay Chaney
- & David E. Jarvis
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Complete genome analysis of a Siphoviridae phage TSK1 showing biofilm removal potential against Klebsiella pneumoniae
- Rabia Tabassum
- , Muafia Shafique
- & Shafiq ur Rehman
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Artificially designed hybrids facilitate efficient generation of high-resolution linkage maps
- Kazutoshi Yoshitake
- , Yoji Igarashi
- & Shuichi Asakawa
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Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development
- Ernest Diez Benavente
- , Damilola R. Oresegun
- & Susana Campino
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Optimization of Assembly Pipeline may Improve the Sequence of the Chloroplast Genome in Quercus spinosa
- Xiangzhou Zhang
- , Yong Hu
- & Tiange Lang
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Article
| Open AccessA broad genomic panel of microsatellite loci from Brycon orbignyanus (Characiformes: Bryconidae) an endangered migratory Neotropical fish
- Gabriel M. Yazbeck
- , Rafael Sachetto Oliveira
- & Dominique Lavenier
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An improved assembly and annotation of the melon (Cucumis melo L.) reference genome
- Valentino Ruggieri
- , Konstantinos G. Alexiou
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Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207
- Zarrin Basharat
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Whole-genome assembly of the coral reef Pearlscale Pygmy Angelfish (Centropyge vrolikii)
- Iria Fernandez-Silva
- , James B. Henderson
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Global Identification, Classification, and Expression Analysis of MAPKKK genes: Functional Characterization of MdRaf5 Reveals Evolution and Drought-Responsive Profile in Apple
- Meihong Sun
- , Yang Xu
- & Shizhong Zhang
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Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis
- Sajjad Asaf
- , Abdul Latif Khan
- & In-Jung Lee
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Rapid de novo assembly of the European eel genome from nanopore sequencing reads
- Hans J. Jansen
- , Michael Liem
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Draft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence
- M. A. Iquebal
- , Rukam S. Tomar
- & Dinesh Kumar
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De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms
- Francesca Giordano
- , Louise Aigrain
- & Zemin Ning
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Molecular classification of prostate adenocarcinoma by the integrated somatic mutation profiles and molecular network
- Lei Yang
- , Shiyuan Wang
- & Yingli Lv
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Searching for new loci and candidate genes for economically important traits through gene-based association analysis of Simmental cattle
- Jiangwei Xia
- , Huizhong Fan
- & Huijiang Gao
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GFinisher: a new strategy to refine and finish bacterial genome assemblies
- Dieval Guizelini
- , Roberto T. Raittz
- & Fabio O. Pedrosa
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Comparative genomic and functional analyses: unearthing the diversity and specificity of nematicidal factors in Pseudomonas putida strain 1A00316
- Jing Guo
- , Xueping Jing
- & Jibin Zhang
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Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens
- Stéphane Deschamps
- , Joann Mudge
- & Gregory May
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Genomic leftovers: identifying novel microsatellites, over-represented motifs and functional elements in the human genome
- Natalie C. Fonville
- , Karthik Raja Velmurugan
- & Harold R. Garner
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Improving classification of mature microRNA by solving class imbalance problem
- Ying Wang
- , Xiaoye Li
- & Bairui Tao
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Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data
- J. A. Frank
- , Y. Pan
- & P. B. Pope
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Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis
- Sabrina Duranti
- , Christian Milani
- & Marco Ventura
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Revisiting the reference genomes of human pathogenic Cryptosporidium species: reannotation of C. parvum Iowa and a new C. hominis reference
- Juan P. Isaza
- , Ana Luz Galván
- & Juan F. Alzate
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Ancient DNA sequence revealed by error-correcting codes
- Marcelo M. Brandão
- , Larissa Spoladore
- & Reginaldo Palazzo
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Illumina Synthetic Long Read Sequencing Allows Recovery of Missing Sequences even in the “Finished” C. elegans Genome
- Runsheng Li
- , Chia-Ling Hsieh
- & Zhongying Zhao
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Completing bacterial genome assemblies: strategy and performance comparisons
- Yu-Chieh Liao
- , Shu-Hung Lin
- & Hsin-Hung Lin
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Complete genome sequence of hypervirulent and outbreak-associated Acinetobacter baumannii strain LAC-4: epidemiology, resistance genetic determinants and potential virulence factors
- Hong-Yu Ou
- , Shan N. Kuang
- & H. Howard Xu
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Dramatic improvement in genome assembly achieved using doubled-haploid genomes
- Hong Zhang
- , Engkong Tan
- & Shuichi Asakawa
Advancing pathogen surveillance by nanopore sequencing and genotype characterization of Acheta domesticus densovirus in mass-reared house crickets