Featured
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| Open AccessThe newly assembled chloroplast genome of Aeluropus littoralis: molecular feature characterization and phylogenetic analysis with related species
- Walid Ben Romdhane
- , Abdullah Al-Doss
- & Afif Hassairi
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Article
| Open AccessComprehensive study reveals phenotypic heterogeneity in Klebsiella pneumoniae species complex isolates
- Nadia Rodríguez-Medina
- , Jonathan Rodríguez-Santiago
- & Ulises Garza-Ramos
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Article
| Open AccessGlobal characterization of biosynthetic gene clusters in non-model eukaryotes using domain architectures
- Taehyung Kwon
- & Blake T. Hovde
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Editorial
| Open AccessGenomics of extreme environments: unveiling the secrets of survival
Life on Earth has displayed remarkable adaptability to the harshest environments, spanning polar regions, scorching deserts, abyssal oceans, lightless caves, noxious lakes, boiling hot springs, and nuclear waste sites. These resilient organisms, known as extremophiles or polyextremophiles, owe their survival due to their unique genetic adaptations. This collection, titled ‘Genomics of Extreme Environments’, comprises several articles published in the esteemed journal Scientific Reports. Each article within this collection investigated genetic signature and adaptation in different extreme environments, including the cold polar region, arid desert, oxygen-deprived Tibetan mountains and others. These studies provide invaluable understanding of how life thrives and evolves under extreme conditions, shedding light on genetic mechanisms and adaptation strategies.
- Kian Mau Goh
- , María-Isabel González-Siso
- & Rajesh K. Sani
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Article
| Open AccessIntegration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human
- Svetlana A. Romanenko
- , Sergei F. Kliver
- & Alexander S. Graphodatsky
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Article
| Open AccessComparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple
- Ashley G. Yow
- , Kanjana Laosuntisuk
- & Massimo Iorizzo
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Article
| Open AccessThe complete chloroplast genome of Cicer reticulatum and comparative analysis against relative Cicer species
- Ezgi Mehmetoğlu
- , Yasin Kaymaz
- & Muhammed Bahattin Tanyolaç
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Article
| Open AccessCharacterization and organelle genome sequencing of Pyropia species from Myanmar
- Myat Htoo San
- , Yoshio Kawamura
- & Yukio Nagano
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Article
| Open AccessGenomic and transcriptomic analysis of camptothecin producing novel fungal endophyte: Alternaria burnsii NCIM 1409
- Shakunthala Natarajan
- , Boas Pucker
- & Smita Srivastava
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Article
| Open AccessFunctional annotation and comparative genomics analysis of Balamuthia mandrillaris reveals potential virulence-related genes
- Alejandro Otero-Ruiz
- , Libia Zulema Rodriguez-Anaya
- & Abraham Cruz-Mendívil
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Article
| Open AccessGenome-wide analysis and characterization of the LRR-RLK gene family provides insights into anthracnose resistance in common bean
- Caroline Marcela da Silva Dambroz
- , Alexandre Hild Aono
- & Welison Andrade Pereira
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Article
| Open AccessEvolution of NLR genes in genus Arachis reveals asymmetric expansion of NLRome in wild and domesticated tetraploid species
- Muhammad Rizwan
- , Syed Zeeshan Haider
- & Saad Serfraz
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Article
| Open AccessComparative genome features and secondary metabolite biosynthetic potential of Kutzneria chonburiensis and other species of the genus Kutzneria
- Manee Chanama
- , Pinidphon Prombutara
- & Suchart Chanama
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Article
| Open AccessComparative genomic analysis uncovers candidate genes related with milk production and adaptive traits in goat breeds
- Zeinab Amiri Ghanatsaman
- , Ahmad Ayatolahi Mehrgardi
- & Ali Esmailizadeh
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Article
| Open AccessChloroplast genome characterization of Uncaria guianensis and Uncaria tomentosa and evolutive dynamics of the Cinchonoideae subfamily
- Andrezza Arantes Castro
- , Rhewter Nunes
- & Mariana Pires de Campos Telles
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Article
| Open AccessImmune gene variation associated with chromosome-scale differences among individual zebrafish genomes
- Sean C. McConnell
- , Kyle M. Hernandez
- & Jill L. O. de Jong
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Article
| Open AccessCo-evolution of large inverted repeats and G-quadruplex DNA in fungal mitochondria may facilitate mitogenome stability: the case of Malassezia
- Anastasia C. Christinaki
- , Bart Theelen
- & Vassili N. Kouvelis
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Article
| Open AccessComparative genome and phylogenetic analysis revealed the complex mitochondrial genome and phylogenetic position of Conopomorpha sinensis Bradley
- Hong Chang
- , Jianglong Guo
- & Yanping Liu
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Article
| Open AccessDisentangling clustering configuration intricacies for divergently selected chicken breeds
- Anatoly B. Vakhrameev
- , Valeriy G. Narushin
- & Michael N. Romanov
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Article
| Open AccessHybrid de novo genome assembly and comparative genomics of three different isolates of Gnomoniopsis castaneae
- Silvia Turco
- , Angelo Mazzaglia
- & Carmen Morales-Rodríguez
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Article
| Open AccessAntioxidant enzymes that target hydrogen peroxide are conserved across the animal kingdom, from sponges to mammals
- Olivia H. Hewitt
- & Sandie M. Degnan
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Article
| Open AccessAddressing the pervasive scarcity of structural annotation in eukaryotic algae
- Taehyung Kwon
- , Erik R. Hanschen
- & Blake T. Hovde
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Article
| Open AccessGenomic analysis of hypoxia inducible factor alpha in ray-finned fishes reveals missing Ohnologs and evidence of widespread positive selection
- Ian K. Townley
- , Courtney H. Babin
- & Bernard B. Rees
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Article
| Open AccessA regulatory hydrogenase gene cluster observed in the thioautotrophic symbiont of Bathymodiolus mussel in the East Pacific Rise
- Ajit Kumar Patra
- , Maëva Perez
- & Yong-Jin Won
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Article
| Open AccessIn silico identification of multiple conserved motifs within the control region of Culicidae mitogenomes
- Thomas M. R. Harrison
- , Josip Rudar
- & Oliver Lung
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Article
| Open AccessChloroplast genome assemblies and comparative analyses of commercially important Vaccinium berry crops
- Annette M. Fahrenkrog
- , Gabriel O. Matsumoto
- & Patricio R. Munoz
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Article
| Open AccessCharacterization and phylogenetic implications of newly sequenced mitogenomes of Five Mileewa and Processina species from China (Hemiptera: Cicadellidae: Mileewinae)
- Hongli He
- , Bin Yan
- & Maofa Yang
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Article
| Open AccessThe first complete genome of the simian malaria parasite Plasmodium brasilianum
- Marko Bajic
- , Shashidhar Ravishankar
- & Eldin Talundzic
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Article
| Open AccessAmplification and sequencing of entire tick mitochondrial genomes for a phylogenomic analysis
- Alexander R. Kneubehl
- , Sebastián Muñoz-Leal
- & Job E. Lopez
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Article
| Open AccessIn silico comparative genomic analysis unravels a new candidate protein arsenal specifically associated with Fusarium oxysporum f. sp. albedinis pathogenesis
- Hafida Ayada
- , Boutayna Dhioui
- & Mohieddine Moumni
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Article
| Open AccessComparative analysis of the plastid and mitochondrial genomes of Artemisia giraldii Pamp.
- Jingwen Yue
- , Qianqi Lu
- & Chang Liu
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Article
| Open AccessGene function prediction in five model eukaryotes exclusively based on gene relative location through machine learning
- Flavio Pazos Obregón
- , Diego Silvera
- & Rafael Cantera
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Article
| Open AccessIdentification of mutant gene for Black crystal coat and non-allelic gene interactions in Neogale vison
- Andrey D. Manakhov
- , Maria Yu. Mintseva
- & Evgeny I. Rogaev
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Article
| Open AccessCharacterization of NRPS and PKS genes involved in the biosynthesis of SMs in Alternaria dauci including the phytotoxic polyketide aldaulactone
- Julia Courtial
- , Jean-Jacques Helesbeux
- & Pascal Poupard
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Article
| Open AccessAdmixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data
- Christos Dadousis
- , Maria Muñoz
- & Riccardo Bozzi
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Article
| Open AccessRemarkable diversity of vomeronasal type 2 receptor (OlfC) genes of basal ray-finned fish and its evolutionary trajectory in jawed vertebrates
- Zicong Zhang
- , Atsuhiro Sakuma
- & Masato Nikaido
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Article
| Open AccessLinkage mapping, comparative genome analysis, and QTL detection for growth in a non-model teleost, the meagre Argyrosomus regius, using ddRAD sequencing
- O. Nousias
- , S. Oikonomou
- & C. S. Tsigenopoulos
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Article
| Open AccessTranscriptome analysis of the bivalve Placuna placenta mantle reveals potential biomineralization-related genes
- Ningjing Song
- , Jiangfeng Li
- & Yurong Ma
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Article
| Open AccessGut microbiota analysis of Blenniidae fishes including an algae-eating fish and clear boundary formation among isolated Vibrio strains
- Masa-aki Yoshida
- , Takuma Tanabe
- & Makoto Kawamukai
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Article
| Open AccessGenome analysis provides insight into hyper-virulence of Streptococcus suis LSM178, a human strain with a novel sequence type 1005
- Yong Hu
- , Shiming Fu
- & Jinquan Li
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Article
| Open AccessHybrid de novo genome-reassembly reveals new insights on pathways and pathogenicity determinants in rice blast pathogen Magnaporthe oryzae RMg_Dl
- Bhaskar Reddy
- , Aundy Kumar
- & Ganesan Prakash
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Article
| Open AccessComparative analysis of prophages carried by human and animal-associated Staphylococcus aureus strains spreading across the European regions
- Romen Singh Naorem
- , Gunajit Goswami
- & Csaba Fekete
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Article
| Open AccessThe macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation
- Matteo Mozzicafreddo
- , Sandra Pucciarelli
- & Cristina Miceli
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Article
| Open AccessGenomic comparisons and phylogenetic analysis of mastitis-related staphylococci with a focus on adhesion, biofilm, and related regulatory genes
- Lucas José Luduverio Pizauro
- , Camila Chioda de Almeida
- & Alessandro de Mello Varani
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Article
| Open AccessMitogenomic analysis of extant condor species provides insight into the molecular evolution of vultures
- D. De Panis
- , S. A. Lambertucci
- & J. Padró
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Article
| Open AccessDiploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom
- Aaron Oliver
- , Sheila Podell
- & Eric E. Allen
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Article
| Open AccessHeterotrophic euglenid Rhabdomonas costata resembles its phototrophic relatives in many aspects of molecular and cell biology
- Petr Soukal
- , Štěpánka Hrdá
- & Vladimír Hampl
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Article
| Open AccessGenome-wide scan reveals genetic divergence in Italian Holstein cows bred within PDO cheese production chains
- Michela Ablondi
- , Massimo Malacarne
- & Andrea Summer
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Article
| Open AccessKaryotypic and molecular evidence supports the endemic Tibetan hamsters as a separate divergent lineage of Cricetinae
- Svetlana A. Romanenko
- , Vladimir S. Lebedev
- & Alexander S. Graphodatsky