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| Open AccessMachine learning classifiers predict key genomic and evolutionary traits across the kingdoms of life
- Logan Hallee
- & Bohdan B. Khomtchouk
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| Open AccessDe novo transcriptome assembly from the nodal root growth zone of hydrated and water-deficit stressed maize inbred line FR697
- Sidharth Sen
- , Shannon K. King
- & Trupti Joshi
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| Open AccessLarge-scale genomic analysis of Mycobacterium tuberculosis reveals extent of target and compensatory mutations linked to multi-drug resistant tuberculosis
- Gary Napier
- , Susana Campino
- & Taane G. Clark
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| Open AccessConstruction of a machine learning-based artificial neural network for discriminating PANoptosis related subgroups to predict prognosis in low-grade gliomas
- GuanFei Chen
- , ZhongMing He
- & XiaoLi Zheng
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| Open AccessDraft genome sequencing and secretome profiling of Sclerotinia sclerotiorum revealed effector repertoire diversity and allied broad-host range necrotrophy
- Navin C. Gupta
- , Sunita Yadav
- & Pankaj Sharma
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| Open AccessIdentification of a key ceRNA network associated with ferroptosis in gastric cancer
- Wen Jin
- , Jianli Liu
- & Lan Yu
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| Open AccessIdentification of potentially common loci between childhood obesity and coronary artery disease using pleiotropic approaches
- Lianke Wang
- , Qiang Zhang
- & Changqing Sun
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| Open AccessTwo independent variants of epidermal growth factor receptor associated with risk of glioma in a Korean population
- In Ki Baek
- , Hyun Sub Cheong
- & Hyoung Doo Shin
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| Open AccessIdentification of mutations in SARS-CoV-2 PCR primer regions
- Anikó Mentes
- , Krisztián Papp
- & Orsolya Anna Pipek
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| Open AccessIntegrated network-based multiple computational analyses for identification of co-expressed candidate genes associated with neurological manifestations of COVID-19
- Suvojit Hazra
- , Alok Ghosh Chaudhuri
- & Nilkanta Chakrabarti
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| Open AccessStructural insight into a glucomannan-type extracellular polysaccharide produced by a marine Bacillus altitudinis SORB11 from Southern Ocean
- Urmi Halder
- , Koushik Mazumder
- & Rajib Bandopadhyay
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| Open AccessGenomic epidemiology of Mycobacterium abscessus in a Canadian cystic fibrosis centre
- Nicholas Waglechner
- , Elizabeth Tullis
- & Robyn S. Lee
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| Open AccessDevelopment and verification of an immune-related gene prognostic index for gastric cancer
- Chen Zhang
- , Tao Liu
- & JianTao Zhang
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| Open AccessTracking mutational semantics of SARS-CoV-2 genomes
- Rohan Singh
- , Sunil Nagpal
- & Sharmila S. Mande
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Article
| Open AccessDe-novo and genome-wide meta-analyses identify a risk haplotype for congenital sensorineural deafness in Dalmatian dogs
- B. Haase
- , C. E. Willet
- & C. M. Wade
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| Open AccessConsidering epitopes conservity in targeting SARS-CoV-2 mutations in variants: a novel immunoinformatics approach to vaccine design
- Mohammad Aref Bagherzadeh
- , Mohammad Izadi
- & Majid Pirestani
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| Open AccessBioinformatics analyses of potential ACLF biological mechanisms and identification of immune-related hub genes and vital miRNAs
- Jiajun Liang
- , Xiaoyi Wei
- & Yuqiong Du
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Article
| Open AccessMetagenomic features of bioburden serve as outcome indicators in combat extremity wounds
- Aram Avila-Herrera
- , James B. Thissen
- & Nicholas A. Be
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| Open AccessExploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.)
- Mahantesha B. N. Naika
- , Nitish Sathyanarayanan
- & Ramanathan Sowdhamini
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Article
| Open AccessInsights into genome evolution, pan-genome, and phylogenetic implication through mitochondrial genome sequence of Naegleria fowleri species
- Muhammad Aurongzeb
- , Yasmeen Rashid
- & Asad Karim
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| Open AccessDetection of repeat expansions in large next generation DNA and RNA sequencing data without alignment
- L. G. Fearnley
- , M. F. Bennett
- & M. Bahlo
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| Open AccessClassification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning
- Wasin Poncheewin
- , Anne D. van Diepeningen
- & Peter J. Schaap
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| Open AccessA deep learning method for miRNA/isomiR target detection
- Amlan Talukder
- , Wencai Zhang
- & Haiyan Hu
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| Open AccessA novel approach GRNTSTE to reconstruct gene regulatory interactions applied to a case study for rat pineal rhythm gene
- Zhenyu Liu
- , Jing Gao
- & Junjie Chen
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| Open AccessscCAN: single-cell clustering using autoencoder and network fusion
- Bang Tran
- , Duc Tran
- & Tin Nguyen
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| Open AccessDiffering coronavirus genres alter shared host signaling pathways upon viral infection
- Diana Cruz-Pulido
- , Wilberforce Zachary Ouma
- & Scott P. Kenney
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| Open AccessLinked-read sequencing for detecting short tandem repeat expansions
- Readman Chiu
- , Indhu-Shree Rajan-Babu
- & Jan M. Friedman
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| Open AccessMetagenomic pipeline for identifying co-infections among distinct SARS-CoV-2 variants of concern: study cases from Alpha to Omicron
- Jose Arturo Molina-Mora
- , Estela Cordero-Laurent
- & Francisco Duarte-Martínez
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| Open AccessDynamic insights into the effects of nonsynonymous polymorphisms (nsSNPs) on loss of TREM2 function
- Raju Dash
- , Yeasmin Akter Munni
- & Il Soo Moon
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| Open AccessVariant-driven early warning via unsupervised machine learning analysis of spike protein mutations for COVID-19
- Adele de Hoffer
- , Shahram Vatani
- & Francesco Sannino
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| Open AccessAbsence of increased genomic variants in the cyanobacterium Chroococcidiopsis exposed to Mars-like conditions outside the space station
- Alessandro Napoli
- , Diego Micheletti
- & Daniela Billi
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| Open AccessGenome-wide identification of carbapenem-resistant Gram-negative bacterial (CR-GNB) isolates retrieved from hospitalized patients in Bihar, India
- Namrata Kumari
- , Mukesh Kumar
- & Punit Kaur
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| Open AccessMALAT1 as master regulator of biomarkers predictive of pan-cancer multi-drug resistance in the context of recalcitrant NRAS signaling pathway identified using systems-oriented approach
- Santosh Kumar
- & Seema Mishra
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| Open AccessMultiple sclerosis genetic and non-genetic factors interact through the transient transcriptome
- Renato Umeton
- , Gianmarco Bellucci
- & Giovanni Ristori
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| Open AccessMulti-staged gene expression profiling reveals potential genes and the critical pathways in kidney cancer
- Hamed Ishaq Khouja
- , Ibraheem Mohammed Ashankyty
- & Mohammad Mobashir
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| Open AccessChromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia
- Natalia O. Dranenko
- , Maria N. Tutukina
- & Olga O. Bochkareva
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| Open AccessDraft genomes assembly and annotation of Carex parvula and Carex kokanica reveals stress-specific genes
- Guangpeng Qu
- , Yuhong Bao
- & Muyou Can
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| Open AccessA hierarchy in clusters of cephalopod mRNA editing sites
- Mikhail A. Moldovan
- , Zoe S. Chervontseva
- & Mikhail S. Gelfand
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| Open AccessMicroRNA editing patterns in Huntington’s disease
- Shiyong Guo
- , Jun Yang
- & Yun Zheng
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| Open AccessFunctional buffering via cell-specific gene expression promotes tissue homeostasis and cancer robustness
- Hao-Kuen Lin
- , Jen-Hao Cheng
- & Sheng-hong Chen
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| Open AccessAccurate and rapid prediction of tuberculosis drug resistance from genome sequence data using traditional machine learning algorithms and CNN
- Xingyan Kuang
- , Fan Wang
- & Robert L. Grossman
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| Open AccessA framework to predict the applicability of Oncotype DX, MammaPrint, and E2F4 gene signatures for improving breast cancer prognostic prediction
- Kevin Yao
- , Chun-Yip Tong
- & Chao Cheng
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| Open AccessRefined characterization of circulating tumor DNA through biological feature integration
- Havell Markus
- , Dineika Chandrananda
- & Nitzan Rosenfeld
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| Open AccessDetecting major introgressions in wheat and their putative origins using coverage analysis
- Jens Keilwagen
- , Heike Lehnert
- & Benjamin Kilian
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| Open AccessMetagenomic sequencing for detection and identification of the boxwood blight pathogen Calonectria pseudonaviculata
- Shu Yang
- , Marcela A. Johnson
- & Boris A. Vinatzer
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| Open AccessMultimodal deep learning applied to classify healthy and disease states of human microbiome
- Seung Jae Lee
- & Mina Rho
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| Open AccessTranscriptome analysis of Rafflesia cantleyi flower stages reveals insights into the regulation of senescence
- Nur-Atiqah Mohd-Elias
- , Khadijah Rosli
- & Kiew-Lian Wan
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| Open AccessA computational pipeline for functional gene discovery
- Aolani Colon
- , Rishabh Hirday
- & Li Cai
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| Open AccessPCBP1 regulates the transcription and alternative splicing of metastasis‑related genes and pathways in hepatocellular carcinoma
- Shuai Huang
- , Kai Luo
- & Ren-Feng Li