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Synaptic architecture of leg and wing premotor control networks in Drosophila

Abstract

Animal movement is controlled by motor neurons (MNs), which project out of the central nervous system to activate muscles1. MN activity is coordinated by complex premotor networks that facilitate the contribution of individual muscles to many different behaviours2,3,4,5,6. Here we use connectomics7 to analyse the wiring logic of premotor circuits controlling the Drosophila leg and wing. We find that both premotor networks cluster into modules that link MNs innervating muscles with related functions. Within most leg motor modules, the synaptic weights of each premotor neuron are proportional to the size of their target MNs, establishing a circuit basis for hierarchical MN recruitment. By contrast, wing premotor networks lack proportional synaptic connectivity, which may enable more flexible recruitment of wing steering muscles. Through comparison of the architecture of distinct motor control systems within the same animal, we identify common principles of premotor network organization and specializations that reflect the unique biomechanical constraints and evolutionary origins of leg and wing motor control.

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Fig. 1: Reconstruction of synaptic inputs to identified leg and wing MNs in Drosophila.
Fig. 2: The majority of synaptic input to MNs is derived from local interneurons.
Fig. 3: PreMNs target specific groups of MNs, forming motor modules.
Fig. 4: Local preMN connectivity differs between leg and wing steering motor modules.
Fig. 5: PreMNs from diverse developmental lineages synapse on MNs in each motor module.

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Data availability

The data presented in the paper were analysed from CAVE materialization version 840 (v.840). Annotated connectivity matrices (Fig. 2) are available as Python Pandas data frames (https://pandas.pydata.org/) at GitHub (https://github.com/tuthill-lab/Lesser_Azevedo_2023). Links to public preMN and MN segmentations are available throughout the text, as well as in Supplementary Tables 13.

Code availability

Scripts to recreate the analyses and figures in the paper, as well as scripts to recreate the connectivity matrices, are available at GitHub (https://github.com/tuthill-lab/Lesser_Azevedo_2023) for users authorized to interact with the CAVEclient. All analysis was performed in Python 3.9 using custom code, making extensive use of CAVEclient (https://github.com/seung-lab/CAVEclient)65 and CloudVolume to interact with data infrastructure, and the libraries Matplotlib, Numpy, Pandas, Scikit-learn, Scipy, stats-models and VTK for general computation, machine learning and data visualization. Additional code is available at https://github.com/htem/FANC_auto_recon, providing additional tutorials, documentation for interaction with FANC and instructions for joining the FANC community.

References

  1. Kernell, D. The Motoneurone and Its Muscle Fibres (Oxford Univ. Press, 2006).

  2. Marshall, N. J. et al. Flexible neural control of motor units. Nat. Neurosci. 25, 1492–1504 (2022).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Henneman, E., Clamann, H. P., Gillies, J. D. & Skinner, R. D. Rank order of motoneurons within a pool: law of combination. J. Neurophysiol. 37, 1338–1349 (1974).

    Article  CAS  PubMed  Google Scholar 

  4. Tresch, M. C., Saltiel, P., d’Avella, A. & Bizzi, E. Coordination and localization in spinal motor systems. Brain Res. Rev. 40, 66–79 (2002).

    Article  PubMed  Google Scholar 

  5. Ting, L. H. & Macpherson, J. M. A limited set of muscle synergies for force control during a postural task. J. Neurophysiol. 93, 609–613 (2005).

    Article  PubMed  Google Scholar 

  6. Hug, F., Avrillon, S., Ibáñez, J. & Farina, D. Common synaptic input, synergies and size principle: control of spinal motor neurons for movement generation. J. Physiol. 601, 11–20 (2023).

    Article  CAS  PubMed  Google Scholar 

  7. Azevedo, A. et al. Connectomic reconstruction of a female Drosophila ventral nerve cord. Nature https://doi.org/10.1038/s41586-024-07389-x (2024).

  8. Sherrington, C. S. The Integrative Action of the Nervous System (Yale Univ. Press, 1906).

  9. Lobato-Rios, V. et al. NeuroMechFly, a neuromechanical model of adult Drosophila melanogaster. Nat. Methods 19, 620–627 (2022).

    Article  CAS  PubMed  Google Scholar 

  10. Azevedo, A. W. et al. A size principle for recruitment of Drosophila leg motor neurons. eLife 9, e56754 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Ting, L. H. & McKay, J. L. Neuromechanics of muscle synergies for posture and movement. Curr. Opin. Neurobiol. 17, 622–628 (2007).

    Article  CAS  PubMed  Google Scholar 

  12. Hodson-Tole, E. F. & Wakeling, J. M. Motor unit recruitment for dynamic tasks: current understanding and future directions. J. Comp. Physiol. B 179, 57–66 (2009).

    Article  PubMed  Google Scholar 

  13. Wuerker, R. B., McPhedran, A. M. & Henneman, E. Properties of motor units in a heterogeneous pale muscle (m. gastrocnemius) of the cat. J. Neurophysiol. 28, 85–99 (1965).

    Article  PubMed  Google Scholar 

  14. Mcphedran, A. M., Wuerker, R. B. & Henneman, E. Properties of motor units in a homogeneous red muscle (soleus) of the cat. J. Neurophysiol. 28, 71–84 (1965).

    Article  CAS  PubMed  Google Scholar 

  15. Pallucchi, I. et al. Molecular blueprints for spinal circuit modules controlling locomotor speed in zebrafish. Nat. Neurosci. 27, 78–89 (2024).

    Article  CAS  PubMed  Google Scholar 

  16. Song, J. et al. Multiple rhythm-generating circuits act in tandem with pacemaker properties to control the start and speed of locomotion. Neuron 105, 1048–1061 (2020).

  17. Phelps, J. S. et al. Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy. Cell 184, 759–774 (2021).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Meissner, G. W. et al. A searchable image resource of Drosophila GAL4 driver expression patterns with single neuron resolution. eLife 12, e80660 (2023).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Kuan, A. T. et al. Dense neuronal reconstruction through X-ray holographic nano-tomography. Nat. Neurosci. 23, 1637–1643 (2020).

  20. Grimaldi, D. & Engel, M. S. Evolution of the Insects (Cambridge Univ. Press, 2005).

  21. Dickinson, M. H. & Tu, M. S. The function of dipteran flight muscle. Comp. Biochem. Physiol. A Physiol. 116, 223–238 (1997).

    Article  Google Scholar 

  22. Barnes, C. L., Bonnéry, D. & Cardona, A. Synaptic counts approximate synaptic contact area in Drosophila. PLoS ONE 17, e0266064 (2022).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Burrows, M. The Neurobiology of an Insect Brain (Oxford Univ. Press, 1996).

  24. Monster, A. W. & Chan, H. Isometric force production by motor units of extensor digitorum communis muscle in man. J. Neurophysiol. 40, 1432–1443 (1977).

    Article  CAS  PubMed  Google Scholar 

  25. Lindsay, T., Sustar, A. & Dickinson, M. The function and organization of the motor system controlling flight maneuvers in flies. Curr. Biol. 27, 345–358 (2017).

    Article  CAS  PubMed  Google Scholar 

  26. Melis, J. M., Siwanowicz, I. & Dickinson, M. H. Machine learning reveals the control mechanics of an insect wing hinge. Nature 628, 795–803 (2024).

  27. Heide, G. & Götz, K. G. Optomotor control of course and altitude in Drosophila melanogaster is correlated with distinct activities of at least three pairs of flight steering muscles. J. Exp. Biol. 199, 1711–1726 (1996).

    Article  CAS  PubMed  Google Scholar 

  28. Fayyazuddin, A. & Dickinson, M. H. Haltere afferents provide direct, electrotonic input to a steering motor neuron in the blowfly, Calliphora. J. Neurosci. 16, 5225–5232 (1996).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Tu, M. S. & Dickinson, M. H. Modulation of negative work output from a steering muscle of the blowfly Calliphora vicina. J. Exp. Biol. 192, 207–224 (1994).

    Article  CAS  PubMed  Google Scholar 

  30. Newland, P. L. & Kondoh, Y. Dynamics of neurons controlling movements of a locust hind leg II. Flexor tibiae motor neurons. J. Neurophysiol. 77, 1731–1746 (1997).

    Article  CAS  PubMed  Google Scholar 

  31. Sasaki, K. & Burrows, M. Innervation pattern of a pool of nine excitatory motor neurons in the flexor tibiae muscle of a locust hind leg. J. Exp. Biol. 201, 1885–1893 (1998).

    Article  PubMed  Google Scholar 

  32. Balint, C. N. & Dickinson, M. H. The correlation between wing kinematics and steering muscle activity in the blowfly Calliphora vicina. J. Exp. Biol. 204, 4213–4226 (2001).

    Article  CAS  PubMed  Google Scholar 

  33. Tu, M. S. & Dickinson, M. H. The control of wing kinematics by two steering muscles of the blowfly (Calliphora vicina). J. Comp. Physiol. A 178, 813–830 (1996).

    Article  CAS  PubMed  Google Scholar 

  34. Mendell, L. M. & Henneman, E. Terminals of single Ia fibers: location, density, and distribution within a pool of 300 homonymous motoneurons. J. Neurophysiol. 34, 171–187 (1971).

    Article  CAS  PubMed  Google Scholar 

  35. Truman, J. W., Schuppe, H., Shepherd, D. & Williams, D. W. Developmental architecture of adult-specific lineages in the ventral CNS of Drosophila. Development 131, 5167–5184 (2004).

    Article  CAS  PubMed  Google Scholar 

  36. Lacin, H. et al. Neurotransmitter identity is acquired in a lineage-restricted manner in the Drosophila CNS. eLife 8, e43701 (2019).

    Article  PubMed  PubMed Central  Google Scholar 

  37. Marin, E. C. et al. Systematic annotation of a complete adult male Drosophila nerve cord connectome reveals principles of functional organisation. Preprint at bioRxiv https://doi.org/10.1101/2023.06.05.543407 (2024).

  38. Allen, A. M. et al. A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord. eLife 9, e54074 (2020).

    Article  PubMed  PubMed Central  Google Scholar 

  39. Li, H. et al. Fly Cell Atlas: a single-nucleus transcriptomic atlas of the adult fruit fly. Science 375, eabk2432 (2022).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Gowda, S. B. M. et al. GABAergic inhibition of leg motoneurons is required for normal walking behavior in freely moving Drosophila. Proc. Natl Acad. Sci. USA 115, E2115–E2124 (2018).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  41. Lees, K. et al. Actions of agonists, fipronil and ivermectin on the predominant in vivo splice and edit variant (RDLbd, I/V) of the Drosophila GABA receptor expressed in Xenopus laevis oocytes. PLoS ONE 9, e97468 (2014).

    Article  ADS  PubMed  PubMed Central  Google Scholar 

  42. Liu, W. W. & Wilson, R. I. Glutamate is an inhibitory neurotransmitter in the Drosophila olfactory system. Proc. Natl Acad. Sci. USA 110, 10294–10299 (2013).

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  43. Schneider-Mizell, C. M. et al. Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex. Preprint at bioRxiv https://doi.org/10.1101/2023.01.23.525290 (2024).

  44. Svara, F. N., Kornfeld, J., Denk, W. & Bollmann, J. H. Volume EM reconstruction of spinal cord reveals wiring specificity in speed-related motor circuits. Cell Rep. 23, 2942–2954 (2018).

    Article  CAS  PubMed  Google Scholar 

  45. Örnung, G., Ottersen, O. P., Cullheim, S. & Ulfhake, B. Distribution of glutamate-, glycine- and GABA-immunoreactive nerve terminals on dendrites in the cat spinal motor nucleus. Exp. Brain Res. 118, 517–532 (1998).

    Article  PubMed  Google Scholar 

  46. Cheong, H. S. et al. Transforming descending input into behavior: the organization of premotor circuits in the Drosophila male adult nerve cord connectome. eLife https://doi.org/10.7554/eLife.96084.1 (2024).

  47. Heide, G. Neural mechanisms of flight control in Diptera. BIONA-Rep. 2, 35–52 (1983).

    Google Scholar 

  48. O’Sullivan, A. et al. Multifunctional wing motor control of song and flight. Curr. Biol. 28, 2705–2717 (2018).

    Article  PubMed  Google Scholar 

  49. Whitehead, S. C. et al. Neuromuscular embodiment of feedback control elements in Drosophila flight. Sci. Adv. 8, eabo7461 (2022).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  50. Heide, G. Properties of a motor output system involved in the optomotor response in flies. Biol. Cybern. 20, 99–112 (1975).

    Article  Google Scholar 

  51. Mark, B. et al. A developmental framework linking neurogenesis and circuit formation in the Drosophila CNS. eLife https://elifesciences.org/articles/67510 (2021).

  52. Baek, M. & Mann, R. S. Lineage and birth date specify motor neuron targeting and dendritic architecture in adult Drosophila. J. Neurosci. 29, 6904–6916 (2009).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  53. Brierley, D. J., Rathore, K., VijayRaghavan, K. & Williams, D. W. Developmental origins and architecture of Drosophila leg motoneurons. J. Comp. Neurol. 520, 1629–1649 (2012).

    Article  CAS  PubMed  Google Scholar 

  54. Enriquez, J. et al. Specification of individual adult motor neuron morphologies by combinatorial transcription factor codes. Neuron 86, 955–970 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  55. Guan, W. et al. Post-transcriptional regulation of transcription factor codes in immature neurons drives neuronal diversity. Cell Rep. 39, 110992 (2022).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  56. Balaskas, N., Abbott, L. F., Jessell, T. M. & Ng, D. Positional strategies for connection specificity and synaptic organization in spinal sensory-motor circuits. Neuron 102, 1143–1156 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  57. Cover, T. M. & Thomas, J. A. Elements of Information Theory (John Wiley & Sons, 2012).

  58. Harcombe, E. S. & Wyman, R. J. Output pattern generation by Drosophila flight motoneurons. J. Neurophysiol. 40, 1066–1077 (1977).

    Article  CAS  PubMed  Google Scholar 

  59. Hürkey, S. et al. Gap junctions desynchronize a neural circuit to stabilize insect flight. Nature 618, 118–125 (2023).

    Article  ADS  PubMed  PubMed Central  Google Scholar 

  60. Binder, M. D., Powers, R. K. & Heckman, C. J. Nonlinear input-output functions of motoneurons. Physiology 35, 31–39 (2020).

    Article  CAS  PubMed  Google Scholar 

  61. Henneman, E., Somjen, G. & Carpenter, D. O. Excitability and inhibitibility of motoneurons of different sizes. J. Neurophysiol. 28, 599–620 (1965).

    Article  CAS  PubMed  Google Scholar 

  62. Maitin-Shepard, J. et al. google/neuroglancer. Zenodo https://doi.org/10.5281/zenodo.5573294 (2021).

  63. Stürner, T. et al. Comparative connectomics of the descending and ascending neurons of the Drosophila nervous system: stereotypy and sexual dimorphism. Preprint at bioRxiv https://doi.org/10.1101/2024.06.04.596633 (2024).

  64. Dorkenwald, S. et al. FlyWire: online community for whole-brain connectomics. Nat. Methods 19, 119–128 (2022).

    Article  CAS  PubMed  Google Scholar 

  65. Dorkenwald, S. et al. CAVE: Connectome annotation versioning engine. Preprint at bioRxiv https://doi.org/10.1101/2023.07.26.550598 (2023).

  66. Elabbady, L. et al. Perisomatic features enable efficient and dataset wide cell-type classifications across large-scale electron microscopy volumes. Preprint at bioRxiv https://doi.org/10.1101/2022.07.20.499976 (2024).

  67. Miller, A. in Biology of Drosophila Ch. 6 (ed. Demerec, M.) 420–534 (Cold Spring Harbor Laboratory Press, 2006).

  68. Soler, C., Daczewska, M., Da Ponte, J. P., Dastugue, B. & Jagla, K. Coordinated development of muscles and tendons of the Drosophila leg. Development 131, 6041–6051 (2004).

    Article  CAS  PubMed  Google Scholar 

  69. Pedregosa, F. et al. Scikit-learn: machine learning in python. J. Mach. Learn. Res. 12, 2825–2830 (2011).

    MathSciNet  Google Scholar 

  70. Li, F. et al. The connectome of the adult Drosophila mushroom body provides insights into function. eLife 9, e62576 (2020).

    Article  PubMed  PubMed Central  Google Scholar 

  71. Matsliah, A. et al. Neuronal “parts list” and wiring diagram for a visual system. Preprint at bioRxiv https://doi.org/10.1101/2023.10.12.562119 (2024).

  72. Witvliet, D. et al. Connectomes across development reveal principles of brain maturation. Nature 596, 257–261 (2021).

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  73. McInnes, L., Healy, J. & Melville, J. UMAP: uniform manifold approximation and projection for dimension reduction. Preprint at https://doi.org/10.48550/arXiv.1802.03426 (2020).

  74. Virtanen, P. et al. SciPy 1.0: fundamental algorithms for scientific computing in Python. Nat. Methods 17, 261–272 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  75. Venkatasubramanian, L. et al. Stereotyped terminal axon branching of leg motor neurons mediated by IgSF proteins DIP-α and Dpr10. eLife 8, e42692 (2019).

    Article  PubMed  PubMed Central  Google Scholar 

  76. Lynn, C. W., Holmes, C. M. & Palmer, S. E. Heavy-tailed neuronal connectivity arises from Hebbian self-organization. Nat. Phys. 20, 484–491 (2024).

  77. Fornito, A., Zalesky, A. & Bullmore, E. Fundamentals of Brain Network Analysis (Elsevier Science, 2016).

  78. Harris, R. M., Pfeiffer, B. D., Rubin, G. M. & Truman, J. W. Neuron hemilineages provide the functional ground plan for the Drosophila ventral nervous system. eLife 4, e04493 (2015).

    Article  PubMed  PubMed Central  Google Scholar 

  79. Lacin, H. & Truman, J. W. Lineage mapping identifies molecular and architectural similarities between the larval and adult Drosophila central nervous system. eLife 5, e13399 (2016).

    Article  PubMed  PubMed Central  Google Scholar 

  80. Eckstein, N. et al. Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila. Cell 187, 2574–2594 (2024).

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Acknowledgements

This work was supported by a Searle Scholar Award, a Klingenstein-Simons Fellowship, a Pew Biomedical Scholar Award, a McKnight Scholar Award, a Sloan Research Fellowship, the New York Stem Cell Foundation and a UW Innovation Award to J.C.T.; a Genise Goldenson Award to W.-C.A.L.; NIH no. U19NS104655 to J.C.T. and M.D.; 1RF1NS128785-01 to J.C.T.; and NIH no. R01MH117808 to J.C.T. and W.-C.A.L. J.C.T. is a New York Stem Cell Foundation – Robertson Investigator. We thank J. Truman, D. Shepherd and E. Marin for assistance with hemilineage identification. We thank H. Lacin, L. Marin, G. Jefferis amd G. Card for helpful discussions, and for their laboratory’s contributions to proofreading in the FANC dataset, in particular K. Eichler, P. Brooks, T. Stürner, M. Costa and G. Jefferis for sharing comprehensive proofreading and annotation of neck connective neurons including descending and ascending neurons in the FANC dataset (supported by Wellcome award 221300/Z/20/Z). We thank members of the Tuthill and Dickinson Laboratories, S. Ahmed, B. Brunton and J. Truman for comments on the manuscript.

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Authors

Contributions

E.L., A.W.A., W.-C.A.L. and J.C.T. conceived the project. W.-C.A.L. and J.C.T. acquired funding. R.L., N.K., K.L., A.H., M.C., D.I., J.G., M.T., C.S.J., S.G., S.K. and T.M. developed and deployed the software to support proofreading of segmented electron microscopy data. S.D., F.C., C.S.-M. and D.B. deployed and supported the annotation software CAVE. A.W.A., E.L., J.S.P., B.M., L.E., A.M., D.S.S., C.J.D., S.A., S.-Y.J.L., B.P., A.C. and K.S.-K. proofread neurons in FANC and edited the paper. A.S. designed and performed light-microscopy imaging. J.S.P. organized the community guidelines and efforts to proofread and annotate FANC. M.D. and W.-C.A.L. advised the project and edited the paper. A.W.A., E.L. and L.E. analysed data. A.W.A., E.L. and J.C.T. wrote the paper, with input from all other co-authors.

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Correspondence to Wei-Chung Allen Lee or John C. Tuthill.

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Extended data figures and tables

Extended Data Fig. 1 Detailed properties of individual leg and wing MNs.

a, Number of input synapses on each leg MN. MNs are ordered by the muscle they innervate, from proximal coxa muscles in the thorax to distal tarsus muscles located in the tibia. b, Number of input synapses on each wing MN. Indirect MNs are shown first, direct MNs are ordered according to sclerite. c, Fraction of synapses on each leg MN broken down by cell class (see Methods). d, Fraction of synapses on each wing MN broken down by cell class. e, Number of preMNs presynaptic to each leg MN. f, Number of preMNs presynaptic to each wing MN. g, h, Fraction of presynaptic partners from each cell class. Presynaptic partners include proofread neurons only, so fragments are not included. On average, each MN receives 3,641 input synapses from 188 preMNs (using a 3-synapse threshold) and each preMN synapses onto 6 MNs (7.2 ± 7.4 sd. for leg preMNs, 5.1 ± 3.1 for wing preMNs). i, j, MN volume. k, MN volume vs. surface area for leg MNs (left) and wing MNs (right). Wing MNs tend to have thicker neurites, explaining the steeper relationship. The thick b1 wing steering MN is the outlier.

Extended Data Fig. 2 Agglomerative hierarchical clustering of leg MNs according to premotor connectivity.

a, Hierarchical clustering of MNs based on the cosine similarity of the columns of the premotor connectivity matrix (Fig. 2d). The scipy.cluster AgglomerativeClustering algorithm minimizes the sum of squared distances in each cluster (Ward, scikit-learn). The algorithm identifies seven clear clusters numbered according to the proximal-to-distal origins and insertion points of the innervated muscles (right). b, Magnification of seven additional clusters at the top left of the similarity matrix. The muscle targets of MNs in each cluster are indicated below. We remain uncertain about which of four MNs innervate the tergopleural vs. the pleural promotor muscles that insert on the anterior aspect of the coxa (cluster 1a). c, In Azevedo et al.7, we identified the muscle targets of each MN by comparing anatomical criteria (left). We performed UMAP clustering of the density of input synapses in 3D onto each MN, as an independent, quantitative verification of our anatomical assignments (right). This analysis revealed surprising features that are corroborated by analyzing preMN connectivity here. Specifically, accessory tibia flexor MNs split into 3 distinct clusters, clusters 7, 8, and 9, where the four accessory tibia flexors in cluster 7 clustered with the five main tibia flexor MNs. Additionally, four of the six tarsus MNs clustered with the same groups, one in cluster 7, two in cluster 8, and 1 in cluster 9 (see numbers at bottom). A fifth tarsus MN, the retro depressor MN, clustered on its own (cluster 12). The final tarsus MN clustered with the small LTM MNs in cluster 10; all three are known to express dip-alpha (Venkatasubramanian et al.75). d, Clusters based on premotor connectivity from a and b. The differences from the UMAP of synapse density include: promotor MNs of the coxa (cluster 1a) clustered separately from the adductor and rotator MNs (cluster 1b); the tarsus depressor MN (cluster 13) clustered separately from the two dip-alpha-positive LTM MNs (cluster 10); a small MN clustered in a separate cluster labeled with an asterisk (*), depicted in f. Names for each module are given on the right. e, UMAP embedding of the columns of the premotor connectivity matrix (Fig. 2d). This clustering does not rely on cosine similarity and largely corroborates the agglomerative clustering. f, Two trochanter flexor MNs with somas on the posterior cortex of the neuropil. In total, six MNs have somas on the dorsal cortex. Four of these neurons innervate the sternal posterior rotator muscle. We argued in Azevedo et al. 7 that the remaining two MNs innervate the trochanter flexor muscle because we observed two axons enter the proximal fibers of the muscle in the X-ray data. The larger of the two MNs (green) clustered with the trochanter flexor MNs according to both the hierarchical clustering and the UMAP embedding. The MN indicated by the asterisk (blue) receives approximately 10X fewer synapses, perhaps explaining why it either clustered by itself (b) or with the sternal rotator MNs (e). In summary, in the paper, we include the (*) MN with the Trochanter flex MNs.

Extended Data Fig. 3 Similarity of wing MNs creates separable modules through agglomerative clustering.

a, Cosine similarity matrix for all wing MNs. Axes are symmetric, each row/column is an MN. (Right) The agglomerative clustering dendrogram along with the threshold at which clusters are separable. Colored branches on the dendrogram depict different modules, not muscles. b, Similarity scores for each pair of wing MNs. Indirect MNs are separated from direct and tension MNs to better show the distribution of similarity scores of direct and tension MNs. c, Schematic showing how ordering by anatomy (left) relates to agglomerative clustering by cosine similarity (right). d, UMAP does not separate the wing MNs by connectivity, possibly because their synaptic input weights are not stereotyped (or proportional) from preMNs. Data points are colored post-hoc according to the agglomerative clustering results.

Extended Data Fig. 4 Local PreMNs drive MN cosine similarity and modularity, for wing and leg systems.

a, Cumulative density functions (CDFs) of module preference for individual preMNs targeting leg MNs, separated by preMN cell class. Gray indicates ten overlaid example CDFs randomly selected from shuffling the columns of each row of the connectivity matrix. Right, Total MN synapses (y-axis) vs. module preference of local preMNs. Pearson’s r for each cell class is shown, p < 10−13. PreMNs with fewer MN synapses have a slight tendency to contact a single module. b, Fraction of MN input synapses (each bar) from local preMNs that prefer that MN’s module (gray) vs. prefer a different module (white). PreMN synapses onto a preferred module account for 62.2% of synapses onto leg MNs. c, Cosine similarity matrices for leg MNs, calculated using synapses from preMNs of each cell class. Modules found in Extended Data Fig. 2 are shown at left and right. Below each matrix is a color bar indicating clusters found by performing the same agglomerative clustering algorithm on the matrix above. Only local preMN connectivity gives the same clusters as using all preMNs. d, CDFs of pairwise similarity of MNs within modules defined in Extended Data Fig. 2 (dark lines) vs. across modules (light colors). Right, the area under the curve (AUC) measures the overlap of the CDFs, with 0.5 indicating similar CDFs, and 1 indicating complete separation (see Methods). Gray bars show the improvement in the AUC if the clusters shown below the similarity matrices in c are used instead. Together, these analyses show that local neurons are responsible for the modularity of MNs. Other classes of preMNs tend to prefer a single module (a) but can make select synapses across modules. e, Module preference for individual preMNs targeting wing MNs, as in a. f, Fraction of input synapses on wing MNs from local preMNs that preferentially target each MN’s module (gray) vs a different module (white). PreMN synapses onto a preferred module account for 75.7% of synapses onto wing MNs. g, Cosine similarity matrices for indirect (power) MNs, calculated using synapses from preMNs of each cell class. Indirect muscles are divided into two antagonistic modules: dorsal longitudinal muscles (DLMs, dark green) and dorso-ventral muscles (DVMs, light green). They share common input from all cell classes except sensory axons, from which they receive few synapses. h, Pairwise similarity of indirect MNs within modules, based on connectivity of each cell class. i, Similarity matrices for tension and direct (steering) MNs. j, Pairwise similarity of indirect MNs within (dark line) vs. across (light) modules, for each preMN cell class. Colors are indicated in e.

Extended Data Fig. 5 Example leg preMNs, their synapses onto motor modules, and impact of proportional connectivity on MN similarity.

a, The location of synapses (spheres) from example preMNs that preferentially synapse onto the SETi (light orange) and FETi (dark orange) tibia extensor MNs. Each preMN has a different morphology and makes more synapses onto FETi than onto SETi. b, Example preMNs that preferentially synapse onto the five tibia flexor MNs in the Tibia flex A module (different shades of blue spheres). c, A single example preMN from b, showing the locations of synapses onto four of the five tibia flexor MNs in the module. The preMN makes more synapses onto the largest neuron, with extra synapses distributed throughout the processes. d, Bootstrap shuffling of module connectivity (see Methods for details). This analysis is similar to Fig. 4h, but for only the largest neurons with the highest similarity (green squares), where high MN similarity reflects proportional preMN weights onto each MN in the module, as in a-c. e, Left, the unshuffled synapse counts from all local preMNs onto the Tibia Flex A MNs; middle, the same matrix with example shuffled synapse counts from the module-targeting preMNs; right, the resulting MN similarity matrices, highlighting the pairwise similarities in the upper triangle. f, The cumulative probability density function (cdf) of the mean pairwise MN similarity for N = 10,000 shuffling repeats, compared to the actual mean. The actual mean is larger than 99.7% of the shuffled instances. g, The bootstrap p-value for the regions of high MN similarity. The high p-values indicate pairs of neurons with small differences in their total synaptic input, such that shuffling the proportional synapses does not disrupt a large difference like exists for the FETi and SETi in a.

Extended Data Fig. 6 Leg modules that include biarticular muscles have more variable module connectivity.

a, Principal Components Analysis of the connections between local preMNs and their preferred motor module. Dots and dark gray bars indicate the percent of the module connectivity variance that is explained by a single principal component, for each leg and wing module. The first principal component was sufficient to explain the majority (>80%) of the variance within most leg motor modules. The percentages of variance explained within modules for the wing power MNs were also high (>90%). For both leg modules and the modules of the wing power muscles, the only significant dimension of variation (captured by the first component alone) was simply the overall preMN output onto the modules. By contrast, the first principal component explained only 63%, 55%, 70%, 87%, and 67% of the variance for the tension, steering A, steering B, C and D modules, respectively. This analysis supports our observation that wing module connectivity is not proportional, from Fig. 4h. Here, we further dissect the PCA analysis to show that leg modules that are composed of motor units with more biomechanical diversity have more variable connectivity, in support of our conclusions about the differences between leg and wing connectivity. b, The first principal component for the Trochanter extend module explains less of the variance than for most other leg modules. If the module is separated according to muscle target, the first PC explains more of the variance in the connectivity onto MNs targeting each muscle. c, MNs innervating the sternotrochanter, tergotrochanter, and trochanter extensor muscles. d, Individual traced muscle fibers from the X-ray tomography image volume. The Trochanter extend module contains the biarticular tergotrochanter muscle, which originates at the dorsal thoracic cuticle, crosses the body-coxa joint and extends the trochanter; and the biarticular sternotrochanter muscle, which originates on the ventral thoracic cuticle, crosses the body-coxa joint and extends the trochanter (Azevedo et al.7). Note, we adopted the muscle nomenclature from the literature (Miller, 1950). All three muscles insert on the same tendon, so an alternative naming scheme would call these three parts of the same muscle, like the three parts of the human triceps brachii muscle. e, When MNs innervating the biarticular long tendon muscle (LTM) are separated by anatomy, the first PC explains more of the connectivity onto MNs targeting each muscle. f, Four groups of LTM neurons. The DIP-α LTM MNs are small, lack a medial projection, express DIP-α, and one targets the femur LTM while the other targets the tibia (Venkatasubramanian et al.75). The specific muscle targets of two other smaller LTM MNs are unknown. g, Traced muscle fibers of the LTM. The LTM is composed of two muscles, one in the femur and one in the tibia, that both insert on the long tendon that crosses multiple articulations to insert on the claw at the tip of the tarsus (Radnikow and Bässler, 1991). h, Subdivision of coxa modules, for comparison with biarticular modules. Posterior modules (blue), Anterior modules (orange). Breaking the posterior module into MNs innervating the remotor/abductor muscle or the posterior rotator muscles increases the projection onto the first PC. Excluding a single MN from the coxa promotion module (orange) increases the projection onto the first PC. i, MNs innervating the coxa muscles in the thorax. Black arrowhead indicates the primary neurite of the excluded coxa promotor MN. j, Coxa muscles in the thorax. We are uncertain about how many MNs innervate the tergopleural vs. the pleural promotor muscles, as the axons are not visible in the X-ray tomography images. The excluded promotor MN receives 4,056 total synapses (compared to 1,484, 4,056, and 6,450 for the other promotor MNs) and has high cosine similarity with the rotator and adductor MNs (Extended Data Fig. 4c). This analysis suggests that the excluded preMN receives input from slightly different sources than the other preMNs. We speculate that perhaps the excluded promotor MN exits the DProN nerve and innervates the pleural promotor, while the others innervate the tergopleural promotor. In short, the leg modules with more variable input, as measured by PCA, include motor units with more complex biomechanics.

Extended Data Fig. 7 Example neurons from each premotor hemilineage.

Example preMNs from each premotor hemilineage. See Supplemental Table 3 for links to view entire premotor populations of each hemilineage in Neuroglancer, an online tool for viewing connectomics datasets.

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Supplementary Information

Supplementary Tables. Supplementary Table 1 contains links for viewing motor neurons organized by motor module in Neuroglancer. Supplementary Table 2 contains links for viewing premotor neurons organized by motor module in Neuroglancer. Supplementary Table 3 contains Neuroglancer links for viewing premotor neurons organized by hemilineage and inferred neurotransmitter.

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Lesser, E., Azevedo, A.W., Phelps, J.S. et al. Synaptic architecture of leg and wing premotor control networks in Drosophila. Nature (2024). https://doi.org/10.1038/s41586-024-07600-z

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