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Chirality errors in nucleic acid structures

Abstract

The prevalence of errors as opposed to true anomalies in protein structures was discussed in Correspondence last year1. We have analysed the nucleic acid structures in the Brookhaven Protein Data Bank using a simple automatic procedure (program available at http://www.mbi.ucla.edu/people/peter/chiral.html) to determine the configurations at tetrahedral chiral centres. It appears that a number of structures containing significant “chirality errors that no-one would argue with”2 have made their way into the data bank.

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Figure 1: Stereochemical nomenclature of a nucleotide.

References

  1. Hooft, R. W. W., Vriend, G., Sander, C. & Abola, E. E. Nature 381, 272 (1996).

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  2. Jones, T. A., Kleywegt, G. J. & Brünger, A. T. Nature 383, 18–19 (1996).

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  3. IUPAC-IUB Joint Commission on Biochemical Nomenclature Eur. J. Biochem. 131, 9–15 (1983).

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Schultze, P., Feigon, J. Chirality errors in nucleic acid structures. Nature 387, 668 (1997). https://doi.org/10.1038/42632

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