Abstract
Circular RNAs (circRNAs) are regulators of gene expression that can regulate cell proliferation and programmed cell death and serve as biomarkers in renal diseases. However, the specific traits and underlying mechanisms of circRNAs in the progression of lupus nephritis (LN) have not been elucidated. In the present study, we clarified that hsa_circ_0054595 (circRTN4) was upregulated in human renal mesangial cells (HRMCs). In cultured HRMCs, circRTN4 could enhance FN expression by directly interacting with miR-513a-5p. High circRTN4 expression in monocytes disseminated into HRMCs in an exosomal manner, thereby accelerating cell proliferation and extracellular matrix deposition. In addition, knockdown of circRTN4 in the kidney or peripheral blood alleviated renal damage in MRL/lpr and BALB/c mice. Clinically, high levels of circRTN4 were found in peripheral blood mononuclear cells and kidney tissues of LN patients, hence serving as an effective biomarker for LN detection and a novel therapeutic target. Our findings indicated that circRTN4 exacerbates mesangial cell dysfunction by activating the miR-513a-5p/FN axis in lupus nephritis.
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Introduction
An increasing number of studies have confirmed that mesangial cell dysfunction, such as the excessive deposition of extracellular matrix (ECM), can result in glomerulosclerosis in various kidney diseases, including lupus nephritis (LN)1,2,3. Thus, understanding the mechanisms of mesangial cell dysfunction is a critical step toward the development of effective therapies for kidney diseases.
Several studies have reported crosstalk between glomerular cells and immune cells or within glomerular cells in LN progression. For instance, Lv et al.’s study found that tubular epithelial cell-derived miR-19b-3p was internalized by macrophages and led to M1 phenotype polarization, which played a critical pathological role in tubulointerstitial inflammation4. Interactions between CD40 L on T cells and CD40 on B cells are critical for autoantibody production in LN and further amplify the inflammatory milieu in the interstitium and glomeruli5. Additionally, Liu et al. indicated crosstalk between the tubule and the glomerulus in LN progression6. Inflammatory cell infiltration is the most important pathological change commonly seen in renal biopsies from patients with lupus nephritis7. Macrophages are the predominant immune cells that mediate the inflammatory process, and monocyte activation is associated with the progression of autoimmune diseases, including SLE8. At present, accumulating evidence has shown that the monocyte-macrophage system is involved in glomerular cell damage by secreting large amounts of cytokines, such as interleukin-1 (IL-1), interleukin-6 (IL-6) and tumor necrosis factor (TNF-α)9,10. However, the molecular mechanisms involved in communication between monocytes and mesangial cells have not been fully elucidated.
Exosomes, with their cargo, serve as messengers in cell-to-cell communications11. Proteins, metabolites, and nucleic acids delivered by exosomes can induce phenotypic and molecular alterations in recipient cells12. In particular, circRNAs are stably present in exosomes, thus effectively altering the biological responses of their recipient cells13. CircRNAs, with circular forms, represent a novel and abundant class with pivotal regulatory functions. Additionally, circRNAs are evolutionarily conserved, relatively stable, and can bind certain microRNAs (miRNAs) or RNA-binding proteins (RBPs), thus regulating gene expression at the posttranscriptional level14,15,16. Recently, deregulated expression of certain circRNAs has been identified in many types of diseases, including renal cell carcinoma and several kidney diseases17,18,19. However, whether there are differentially expressed circRNAs in exosomes released by activation of macrophages, the role of differentially expressed circRNAs in mesangial cell dysfunction, and the possible mechanisms are still unclear in the pathogenesis of lupus nephritis.
Therefore, in this study, we explored the specific roles and mechanism of deregulated circRNAs in proliferation and extracellular matrix deposition in mesangial cells and investigated whether monocytes are involved in mesangial cell injury by secreting exosomal circRNAs.
Materials and methods
Patients and tissue samples
Thirty patients aged 22–55 years diagnosed with SLE and type III/IV LN (ISN/RPS2003 taxonomy) were recruited from the Inpatient Department of Nephrology at the Second Hospital of Hebei Medical University from 2017 to 2019. Twenty samples of control renal tissues were obtained from nephrectomies performed for the treatment of renal lipomyoma cancers, and pathologically confirmed normal kidney tissue without a history of other autoimmune diseases, diabetic nephropathy, hypertension nephropathy, or severe infections. Peripheral blood mononuclear cell was acquired from 27 patients with active LN and 28 patients of SLE without kidney damage. All patients met the 2012 revised criteria for SLE and LN and were diagnosed at the Department of Rheumatology of the Second Hospital of Hebei Medical University from August 2017 to June 2019. Plasma samples for cell culture were acquired from five patients of LN without the initiation of immunosuppressive therapy, infections or other complications who underwent therapeutic plasma exchange. Five plasma samples were collected from healthy donors whose age and sex-matched the LN patients (UPro = 2.186 ± 0.96 g/24 h) and was named the control group. The existing exosomes in these plasma samples were removed before incubating with cells. This study was approved by the Clinical Research Ethics Committee of the Second Hospital of Hebei Medical University. Written informed consent was obtained from each study participant.
Animals
We generated two mouse models: (1) Female MRL/lpr mice and MRL/MPJ mice were purchased from Jackson Laboratory (#JAS000485, Bar Harbor, ME, USA, RRID: IMSR_JAX: 000485). (2) A pristane-induced lupus model was generated with BALB/c mice (HFK Bioscience Co., Ltd, Beijing, China). According to the article20, disease induction is performed through an intraperitoneal injection of 0.5 ml of pristane. After six months, dsDNA level in peripheral blood was detected to identify whether the model was successfully established (BALB/c + P). IgG expression in the kidney was detected by IF and urine protein level was detected by ELISA to identify the renal injury.
Mice were fed in a standard environment with regular light/dark cycles and free access to a water and food diet. All animal experiments were approved by the Institutional Animal Care and Use Committee of Hebei Medical University (approval ID: HebMU 20080026). BALB/c + P mice were randomly divided into five groups: BALB/c + P, BALB/c + P + CircRTN4-shRNA-AAV (BALB/c + P + CircRTN4-R) or BALB/c + P + circNC-AAV (BALB/c + P + circNC-R) by kidney orthotopic injection and BALB/c + P + CircRTN4-shRNA-AAV (BALB/c + P + CircRTN4-V) or BALB/c + P + circNC-AAV (BALB/c + P + circNC-V) group by tail vein injection. Six BALB/c mice served as the control group. Similarly, MRL/lpr mice were randomly divided into five groups: MRL/lpr, MRL/lpr + CircRTN4-shRNA-AAV (MRL/lpr + CircRTN4-R) or MRL/lpr + circNC-AAV (MRL/lpr + circNC-R) by kidney orthotopic injection and MRL/lpr + CircRTN4-shRNA-AAV (MRL/lpr + CircRTN4-V) or MRL/lpr + circNC-AAV (MRL/lpr + circNC-V) group by tail vein injection. Three MRL/MPJ mice served as the control group.The adeno-associated virus (AAV) contained specific sicircRTN4 target or negative control target was purchased from VectorBuilder (Guangzhou, China)). For kidney orthotopic injection: the renal cortex of mice in the CircRTN4-R group and the NC-R group were injected with 50 μL 1 × 109 infective units of AAV in both kidneys, while the control BALB/c or MRL/MPJ mice were injected with isometric saline. For tail vein injection: we administrated 100 μL 1 × 109 infective units of AAV via tail vein in CircRTN4-V and circNC-V groups, while the control BALB/c or MRL/MPJ mice were injected with isometric saline. After six weeks, the mice were sacrificed after 24-h urine and blood samples were taken, and the renal cortex was collected for relevant investigations. The 24 h proteinuria was detected by a mouse urine protein enzyme-linked immunosorbent assay quantification kit according to the manufacturer’s protocol (ZCi Bio, Shanghai, China, #ZC-38527). Blood urea nitrogen (BUN) and serum creatinine (Scr) were analyzed by the Urea Assay Kit (Jiancheng Bio, Nanjing, China, #C013-2-1) and Creatinine Assay Kit (Jiancheng Bio, Nanjing, China, #C011-1-1) according to the manufacturer’s protocol.
Cell culture
HRMCs and the THP1 cell line were purchased from the Chinese Academy of Sciences, Shanghai Institute for Biological Sciences Cell Resource Center. HRMCs and THP1 cells were cultured in Roswell Park Memorial Institute (RPMI) 1640 medium with 10% exosome-free fetal bovine serum (FBS) (Gibco, NY, USA). HEK293T cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) with 10% FBS (Gibco, NY, USA). Culture conditions were carried out at 37 °C in an incubator (Thermo Fisher Scientific, Waltham, MA, USA) with 5% CO2 and 95% air. (1) To investigate the effect of LN plasma on the expression of circRTN4, the HRMCs and THP1 were randomly exposed to control plasma or LN plasma (5%) and collected at 8 h. Real-time PCR was used to examine the expression of circRTN4. (2) In the RNA interference (RNAi) experiment, the HRMCs were randomly divided into four groups: control, LN plasma, LN plasma + sicircRTN4, and LN plasma + siNC. Cells were collected at different times after the stimulation with LN plasma (5%). Flow cytometry and EdU assay were used to detect the proliferation level. Then, the expression of FN was detected by real-time PCR and western blot. (3) To explore the communication between HRMCs and THP1, we employed a coculture system. THP1 cells were treated with LN plasma for 8 h, and then the culture medium was changed to an exosome-free medium for 24 h. By this way, LN plasma treated conditioned media (LM) from THP1 cells was harvested for co-culture system. HRMCs were randomly divided into four groups: control, conditioned media (LM), LMGW4869, LMDMSO. The LMGW4869 and LMDMSO groups were pretreated with GW4869 (20 μM) or DMSO (20 μM) for 2 h. EdU assay was used to detect the proliferation level. Then, the expression of FN in HRMC and culture supernatant was detected by real-time PCR and ELISA, respectively. (4) To investigate the effect of THP1-exosome on mesangial cells, exosomes from THP1 were isolated after incubated with LN plasma or control plasma for 8 h to treat HRMCs. HRMCs were randomly divided into four groups: control, LN plasma, LN plasma + THP1exoLN, LN plasma + THP1exoCon. The expression of circRTN4 was detected by real-time PCR. (5) To investigate the effect of exosomal-circRTN4 on mesangial cells, THP1 was infected with sicircRTN4 or siNC for 48 h followed by LN plasma treatment for 8 h. THP1 derived exosomes was harvested to incubate with HRMCs. HRMCs were randomly divided into four groups: control, LN plasma, LN plasma + THP1exoLN, LN plasma + THP1exosicircRTN4+LN, LN plasma + THP1exosiNC+LN. The expression of circRTN4 was detected by real-time PCR.
Cell transfection
HRMCs and THP1 were transfected with sicircRTN4 (RIBOBIO, Guangzhou, China), and HRMCs were also transfected with circRTN4-WT (General BIO, Anhui, China) or miRNA mimics (RIBOBIO, Guangzhou, China) using Lipofectamine 3000 according to the manufacturer’s protocols (Invitrogen, Carlsbad, CA, USA, #L3000015). The sequences are as follows: sicircRTN4 (5′-TCT GAA GAT GAG ACC CTT T-3′); miR-513a-5p mimic (5′-UAC UGU GGA GGG ACA CUU-3′); miR-607 mimic (5′-GUU CAA AUC CAG AUC UAU AAC-3′); miR-647 mimic (5′-GUG GCU GCA CUC ACU UCC UUC-3′).
Real-time PCR
Total RNA of cells and renal cortex was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). RNA concentration was measured by NanoDrop 2000. Reverse transcription was performed by PrimeScript™ RT Master Mix (Takara, #047A), and polymerase chain reaction (qPCR) was performed with SYBR Premix EX Taq II (Takara, #820A) following the manufacturer’s instructions. The 2−ΔΔCT method was used to normalize the qPCR cDNAs. All experiments were repeated at least in triplicate.
RNA fluorescence in situ hybridization (FISH)
A specific probe for circRTN4 was designed and synthesized by RiboBio, and the signals were detected by the FISH Kit (RiboBio) according to the manufacturer’s instructions. Cells and tissue samples were fixed in 4% formaldehyde for 10 min. After permeabilization (1× PBS/0.3% Triton X-100), they were hybridized in hybridization buffer with specific probes to circRTN4, U6 and 18S at 37 °C overnight. The hybridization buffer was then gradually washed off with 4× SSC (including 0.1% Tween-20), 2× SSC and 1× SSC at 42 °C. Nuclei were counterstained with 4,6-diamidino-2-phenylindole (DAPI; Southernbiotech, Birmingham). Confocal images were captured using a laser scanning confocal microscope (Leica, Wetzlar, Germany). The positive signal was located in nuclei or cytoplasm and the average integrated optical density (IOD) value was quantified to indicate the expression of circRTN4.
Immunofluorescence (IF)
4-μm-thick sections were dewaxed in xylene and rehydrated with graded ethanol. The slides were blocked with 10% goat serum and then incubated with anti-FN (1:200; Abcam, #ab2413) and anti-CD68 (1:100; ABclonal, #A13286) antibodies at 4 °C overnight. The next day, the sections were incubated with FITC-conjugated goat anti-rabbit IgG/TRITC-conjugated goat anti-mouse IgG at 37 °C for 2 h followed by treatment with 4’,6-diamidino2-phenylindole (DAPI; Southernbiotech, Birmingham). Images of the sections were captured with a laser scanning confocal microscope (Leica, Wetzlar, Germany). Image Pro Plus (Media Cybernetics, Silver Spring, MD) was used to quantify the results, and the average IOD value was quantified to indicate the expression of protein.
Flow cytometry (FCM)
When transfected siRNA with or treated with conditioned media for 48 h, HRMCs were collected, washed with PBS, and then fixed with 75% ethyl alcohol at 4 °C overnight. The following day, the ethylalcohol was removed, and the cells were washed with PBS two times, then fixed with 500 µl of propidium iodide (PI) staining solution and incubated for 30 min in the dark at 4 °C. The analysis of the cell cycle was performed with a FACSCalibur flow cytometer with CellQuest software (Beckman).
Immunofluorescence (IF) for EdU incorporation
The HRMC proliferation level was evaluated by measuring the incorporation of EdU using the EdU Cell Proliferation Kit (Beyotime Biotechnology, Shanghai, China) according to the manufacturer’s instructions. Firstly, the cells were treated as described above. Then, EdU (10 μmol/l) was added to the culture medium 2 h before the cells were collected. Secondly, the cells were fixed in a 4% paraformaldehyde solution and permeabilized with 0.3% Triton X‐100 for 30 min at room temperature. After that, the cells were incubated with click reaction solution for 30 min at room temperature. After washed with PBS, they were incubated with 4′,6‐diamidino‐2‐ phenylindole (DAPI; Southernbiotech, Birmingham), and the cells were observed using an Olympus microscope (OLYMPUS, Tokyo, Japan). The positive signal was located in nuclei and green granular, and the positive ratio was quantified by Image Pro Plus (Media Cybernetics, Silver Spring, MD).
Immunohistochemistry (IHC)
The 4% formaldehyde-fixed renal sections were deparaffinized in xylene and rehydrated through graded ethanol. After antigen recovery was performed using a pressure cooker, the endogenous peroxidase was blocked with 3% H2O2 for 30 min at room temperature. Then the slides were blocked with 10% goat serum and were respectively incubated with primary antibodies against FN (1:200; Abcam, #ab2413) and CyclinD1 (1:200; Abcam, #ab134175) overnight at 4 °C. Then the sections were incubated with polymer helper and polyperoxidaseanti-mouse/rabbit IgG at 37 °C and finally stained with diaminobenzidine. Finally, images were captured using an Olympus microscope (OLYMPUS, BX71, Tokyo, Japan). The average integrated optical density value was quantified to indicate the expression of protein by Image Pro Plus (Media Cybernetics).
Western blot analysis
Total protein from HRMCs, THP1 cells or the renal cortex of mice was extracted with RIPA lysis buffer, lysed for 1 h, and then centrifuged at 120,000 × g at 4 °C for 20 min. The supernatant was collected, and the relative levels of protein expression were detected by western blotting. In brief, the protein was separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, USA). Then the membrane was blocked with 5% bovine serum albumin (BSA) for 1.5 h at 37 °C and incubated with anti-FN (1:2000; Abcam, ab2413), CyclinD1 (1:1000; Abcam, ab134175), CD9 (1:200; Santa Cruz, sc13118), and CD63 (1:200; Santa Cruz, sc5275) antibodies at 4 °C overnight. Subsequently, the membrane was incubated with a goat anti-rabbit/mouse IgG secondary antibody (Proteintech, Wuhan, China, diluted 1:5000). Finally, the signal was imaged using the LI-COR Odyssey Infrared Imaging System (Lincoln, NE, USA). All experiments were repeated at least three times.
Dual luciferase reporter assay
HEK-293T cells were seeded in 24-well plates at a density of 6 × 104 cells per well for 24 h before transfection. The cells were co-transfected with a mixture of luciferase reporter vectors (pmirGLO) containing circRTN4-miR-513 binding sequences or mutant sequences and miRNA mimics (20 nM) to examine miRNA binding ability. After 24 h, the luciferase activity was measured using a dual luciferase reporter assay system (Promega, Madison, WI, USA) according to the manufacturer’s protocol.
Hematoxylin-Eosin (H&E) staining
2-μm paraffin sections were deparaffinized and placed in hematoxylin solution for 5 min to stain the nuclei. Then transfer the slides to a staining jar with running water (tap water is fine) till the water is clear. After that, the slides were incubated with Eosin solution for 2 min to stain the cytoplasm. Successively transfer the slides into staining jars with 85% ethanol for 3 s, 95% ethanol for 2 min, 100% ethanol for 10 min and xylene for 10 min. Finally, the number of glomerular cells was quantitatively analyzed using Image J. Refer to the method in article21, an average of 30 glomeruli per mouse was examined and averaged for revealing the level of glomerular cell proliferation.
Periodic Acid-Schiff (PAS) staining
After deparaffinized and rehydrated, the 2-μm paraffin sections were stained with a PAS staining kit (Baso, #BA4080A). Light microscopy (OLYMPUS, BX71) was used to observe morphological changes in the glomeruli. The mesangial matrix was identified by the presence of PAS-positive and nuclei-free areas in the mesangium. The intensities of these areas were quantitatively analyzed using Image J. An average of 30 glomeruli per mouse was examined and averaged for morphometric scores21.
Sirius red/fast green collagen staining
After deparaffinized and rehydrated, the 4‐μm sections were stained with Dye Solution for 30 min and then eluted with Dye Extraction solution (Chondrex, # 9046). Samples for staining were dehydrated in 100% ethanol, washed with xylene and mounted in the resinous medium. Finally, the collagen was identified by the presence of Sirius Red-positive areas in the glomeruli and analyzed using Image J. An average of 30 glomeruli per mouse was examined and averaged for revealing the level of ECM deposition.
Exosome experiments
For exosome extraction, the cells were cultured in a medium with exosome-free FBS, which was prepared by centrifugation to remove existing exosomes. For cell incubation, we followed the standard centrifugation steps. Briefly, centrifugation was performed at 300 × g for 10 min, followed by 2000 × g for 20 min and 10,000 × g for 30 min. The supernatant was then filtered through a 0.2-μM filter (Pall Corp) and further centrifuged at 100,000 × g for 90 min at 4 °C twice to pellet the exosomes. Finally, exosomes were resuspended in PBS (usually 50 μL to 100 μL). Samples were detected by transmission electron microscopy (TEM) to analyze the diameter and shape. For RT-qPCR or western blot detection, exosomes from cell culture media were isolated by the Total Exosome Isolation Reagent (from cell culture media) (Cat# 4478359, Invitrogen, USA) and exosomes from serum of mice were isolated by Total Exosome Isolation Kit (from plasma) (Cat#4484450, Invitrogen, USA), following the manufacturer’s protocol.
Extraction of peripheral blood mononuclear cell (PBMC)
5 mL peripheral venous blood from LN patients or healthy examiner and 2 mL from mice were collected, and Human/Mouse Mononuclear Cells Separation Medium (HuahuiBio, #25610/25617) was used to extract PBMC. Cells were cultured with 1640 medium and 10% fetal bovine serum (Gibco). 24 h later, the medium supernatant was changed with fresh medium, and the CD45+ adherent cells were identified as monocyte.
Enzyme-linked immunosorbent assay (ELISA)
FN (Shanghai Zcibio Technology, ZC35077; ZC38792) was analyzed using ELISA kits according to the manufacturer’s protocols. The absorbance at 450 nm was immediately measured by an automatic microplate reader after adding the stop solution.
Statistical analysis
The data are expressed as the mean ± standard error of the mean (SEM) or median with interquartile range. SPSS 21.0 (SPSS, Inc., Chicago, IL) was used for data analysis. The homogeneity variance was compared in every group. Student’s t test and Mann–Whitney nonparametric test were applied to compare the variables between the two groups. One-way analysis of variance (ANOVA) was performed to evaluate the statistical significance between multiple comparisons by Bonferroni’s correction. A P value < 0.05 was considered statistically significant.
Results
CircRTN4 was high-expressed in mesangial cells of LN
To explore whether deregulated circRNAs were involved in mesangial cell injury in LN, HRMCs treated with LN plasma or control plasma were characterized by an Arraystar Human CircRNA Array (Kangcheng Biotechnology Co., Ltd.) (Fig. 1a). Thirteen of the most upregulated and ten of the most downregulated circRNAs are displayed in the heatmap (Fig. 1b). By RT-qPCR, we identified 10 of the most deregulated circRNAs. As shown in Fig. 1c, the hsa_circ_0054595 was notably upregulated in HRMCs exposed to LN plasma. As the results showed in circBase, hsa_circ_0054595 consisted of RTN4 exons 4–8, referred to as circRTN4 hereafter (Fig. 1d). To further confirm the existence and circular characteristics of circRTN4, we performed qPCR using divergent primers containing a back-splice junction and convergent primers for both cDNA and genomic DNA (gDNA) and discovered that divergent primers amplified only a band in cDNA (Fig. 1e). The predominant cytoplasmic distribution of circRTN4 in HRMCs was revealed by FISH staining (Fig. 1f). Moreover, we validated the expression of circRTN4 in clinical specimens. As shown in Fig. 1g, the positive staining of circRTN4 was located in cytoplasm in glomerular cells and significantly higher in LN patients than that in normal group, and the positive position of circRTN4 was consistent with the mesangial area. Collectively, these data indicated that circRTN4 expression is upregulated in both HRMCs and human kidneys of LN.
Downregulation of circRTN4 suppressed the proliferation and FN expression of HRMCs induced by LN plasma
Our previous study proved that mesangial cell dysfunction plays an important role in LN progression through excessive cell proliferation and accumulation of extracellular matrix (ECM)22. Consistent with previous experimental results, we confirmed again that CyclinD1 and FN were highly expressed in the glomeruli of LN patients (Fig. 2a, b). To further explore the role of circRTN4, siRNA was designed targeting the junction site of circRTN4. As shown by RT‐qPCR, the expression of circRTN4 was reduced in the circRTN4‐specific siRNA group compared with that in the negative control siRNA group (Fig. 2c) and we selected the sicircRTN4-2 for follow-up research. As illustrated in Fig. 2d, the results of Flow cytometry showed the percentage of cells in G0/G1 phage was remarkably decreased accompanied with S phrase increased in the LN group, whereas knockdown of circRTN4 expression inhibited the effect of LN plasma. Similarly, the EdU assay revealed that downregulation of circRTN4 impaired the excessive proliferation of HRMCs incubated with LN plasma (Fig. 2e). Moreover, we found that FN mRNA level showed a remarkable decrease with the downregulation of circRTN4 compared with the LN group (Fig. 2f), which showed the same change in the level of FN protein (Fig. 2g). In brief, downregulation of circRTN4 likely suppressed the proliferation and FN production of HRMCs in LN group.
CircRTN4 enhanced FN expression by directly interacting with miR-513a-5p
It has been well demonstrated that the function of circRNA is closely related to its location. Previously, we confirmed the predominant cytoplasmic distribution of circRTN4 not only in HRMCs but also in renal glomerular of LN group. Then, we speculated that circRTN4 might act as a molecular sponge for miRNAs to regulate downstream genes. To validate this hypothesis, online bioinformatics database analysis (CircInteractome and miRDB) identified that six miRNAs could target FN mRNA while sponging by circRTN4 (Fig. 3a). Since it was the result of miRDB prediction, the higher the score, the higher the reliability. Results with a score greater than 80 are generally considered relatively reliable, while that below than 60 are considered less reliable. Three miRNAs (miR-607, miR-647, miR-513a-5p) with higher target scores (greater than 75) were selected for further investigation. And these three miRNAs could all reduce the expression of FN protein (Fig. 3b). Whereas only miR-513a-5p could downregulate FN mRNA level (Fig. 3c), thus we hypothesized that miR-513a-5p could directly bind with the FN 3’-UTR sequence, while the other two miRNAs might indirectly regulate the expression of FN. Moreover, this effect could be reversed after transfection with the circRTN4 overexpression plasmid (Fig. 3d). Next, to determine whether miR-513a-5p could bind to FN mRNA directly, we constructed a reporter plasmid with the wild-type FN 3′-UTR and the 3′-UTR with potential site mutations. As anticipated, miR-513a-5p mimics dramatically reduced the luciferase activity of 293T cells transfected with the plasmid containing the wild-type FN mRNA 3′-UTR sequence (Fig. 3e). The dual luciferase reporter vector also confirmed the interaction and the binding site of miR-513a-5p and circRTN4 in 293T cells (Fig. 3f). These data indicated that by sponging miR-513a-5p, circRTN4 alleviated the overexpression of FN induced by LN plasma.
Downregulation of kidney circRTN4 inhibited ECM accumulation in LN mice
To further confirm the role of circRTN4 in the dysfunction of mesangial cells in vivo, we used two models including pristane-induced LN model and MRL/lpr mice. In pristane-induced LN model, the expression of circRTN4 was increased in glomerular cells of BALB/c + P mice and located in cytoplasm, while the expression of circRTN4 was notably reduced in the BALB/c + P + circRTN4-R group compared with the BALB/c + P group (Fig. 4a). In addition, knockdown of circRTN4 expression in glomerular cells alleviated proteinuria and blood urea nitrogen (BUN) levels in the BALB/c + P + circRTN4-R group (Fig. 4b, c), while serum creatinine (Scr) remained unchanged (Fig. 4d). H&E, PAS and Sirius Red staining revealed that the cell proliferation, mesangial expansion and matrix accumulation in the glomeruli of BALB/c + P mice were rescued by injection of circRTN4‐shRNA‐AAV (Fig. 4e–g). The mRNA and protein levels of FN were significantly increased in BALB/c + P group compared with control group, whereas FN expression was markedly reduced after downregulation of circRTN4 (Fig. 4h–j). Similar results were shown in MRL/lpr mice (Supplementary Fig S1). In general, inhibition of circRTN4 in glomeruli could alleviate the pathological changes and improve the renal function of LN mice.
Increasing internalization of monocyte-derived exosomes aggravated HRMC cell proliferation and FN expression
Monocytes/macrophages participate in inflammatory damage to local tissues and organs. Unsurprisingly, we confirmed marked macrophage infiltration of LN kidney tissues (Fig. 5a). To further investigate whether exosomes were involved in the intercellular communication of LN, we isolated and purified PKH67-labeled monocyte-derived exosomes by ultracentrifugation and applied them to HRMCs. As expected, increased internalization of fluorescent exosomes was observed in HRMCs treated with LN plasma (Fig. 5b). To further confirm the direct effect of exosomes between cells, we employed a co-culture system (Fig. 5c). THP1 cells were treated with LN plasma for 8 h, and then the culture medium was changed to an exosome-free medium. Twenty-four hours later, conditioned media (LM) from THP1 cells was harvested to treat HRMCs. As shown in EdU assays, LM from LN plasma-treated THP1 cells significantly promoted HRMC proliferation, whereas blocking exosome release by GW4869 in THP1 cells could alleviate the excessive proliferation of HRMCs (Fig. 5d). Consistent with this, the overexpression and secretion of FN induced by LM were remarkably reduced by the addition of GW4869 (Fig. 5e, f). Taken together, monocyte-derived exosomes were transported to HRMCs, thus promoted cell proliferation, FN synthesis and secretion.
Monocyte-circRTN4 diffused into HRMCs, thus increased its expression in HRMCs
To further investigate the specific mechanism of exosome in intercellular communication between cells, THP1-derived exosomes were extracted and identified by TEM and western blot (Fig. 6a). And we demonstrated that circRTN4 was significantly enriched in exosomes and THP1 cells incubated with LN plasma (Fig. 6b, c). FISH revealed the predominant cytoplasmic localization of circRTN4 in THP1 cells (Fig. 6d). Subsequently, HRMCs were incubated with exosomes isolated from THP1 cells. As shown in Fig. 6e, LN plasma-treated THP1 exosomes further elevated the high expression of circRTN4 in HRMCs induced by LN plasma. Meanwhile, the level of circRTN4 in exosome-exposed HRMCs was obviously decreased by knockdown the circRTN4 expression in THP1 cells (Fig. 6f). Then, the inhibition of exosomes reduced the expression of circRTN4 in HRMCs treated with LM (Fig. 6g). The above results indicated that upregulated exosomal-circRTN4 could induce dysfunction of mesangial cells. Importantly, total RNA was extracted from PBMCs of SLE patients without kidney damage and LN patients, the expression of circRTN4 was significantly enriched in LN patients (Fig. 6h). RNA FISH revealed the predominant cytoplasmic localization of circRTN4 in PMBCs (Fig. 6i). In summary, THP1 derived exosomal circRTN4 might play a vital role in LN progression through interacting with HRMCs.
Downregulation of circRTN4 in PBMCs alleviated renal damage in LN mice
Our pre-test had confirmed that the level of circRTN4 in PBMCs of mice could be effectively knocked down by AAV through tail vein injection (Supplementary Fig. S2a), but the virus could almost not infect glomerulus cells, only infects the renal tubule cells and renal interstitial (Supplementary Fig. S2b). To further confirm our hypothesis, two LN model mice were administered circRTN4-shRNA-AAV or NC-AAV by tail vein injection. As illustrated in Fig. 7a, the expression of circRTN4 in exosomes from the serum of mice was notably increased in BALB/c + P mice by RT‐qPCR, which could be suppressed by CircRTN4-shRNA-AAV. In addition, downregulation of circRTN4 alleviated proteinuria (Fig. 7b) and blood urea nitrogen (BUN) levels in the BALB/c + P + circRTN4-R group (Fig. 7c), while serum creatinine (Scr) remained unchanged (Fig. 7d). Moreover, the knockdown of circRTN4 alleviated macrophage infiltration (Fig. 7e) and relieved the pathological changes of the kidneys as shown in Fig. 7f–h by H&E, PAS and Sirius Red staining. Furthermore, the FN protein expression in glomerular cells was notably decreased in BALB/c + P + circRTN4-V group compared with that in BALB/c + P group (Fig. 7i, j). Consistently, the expression of CyclinD1 showed a similar result (Fig. 7k, l). Similar results were shown in MRL/lpr mice (Supplementary Fig. S2c–i). Taken together, peripheral blood-circRTN4 was contributed to the renal damage by promoting macrophage infiltration, mesangial cell proliferation, and ECM deposition in LN mice.
Discussion
We report here that circRTN4 plays a crucial role in LN progression by regulating the miR-513a-5p/FN axis. Moreover, monocyte could participate in mesangial cell dysfunction in exosome dependent manner.
Our previous study has proved that mesangial cell dysfunction plays an important role in LN progression22. Meanwhile, expanding data have demonstrated that infiltrating monocytes and macrophages are associated with renal injury in both mice and human23,24. Consistent with these reports, we confirmed monocyte infiltration in renal tissues of LN. In this study, the results revealed that monocytes could aggravate mesangial cell dysfunction through exosomes in LN. Thus, we were eager to know the specific mechanism underlying this intracellular communication.
Recently, research on circRNAs has mainly focused on oncology, and they have been reported to play key roles in tumor processes25,26,27. Given that circRNAs are highly abundant and specifically expressed in tissue15,16, they may be involved in the pathology of multiple glomerulonephritis. Hu et al.28 confirmed that circRNA-15698 is highly expressed in both DN mice and mouse mesangial cells and can aggravate the extracellular matrix of DN. Ouyang et al.29 reported that plasma circRNA_002453 levels were upregulated in LN patients and positively correlated with 24-h proteinuria. In contrast, the expression of hsa_circ_0123190 was significantly decreased in the renal tissues of patients with LN30. Nevertheless, the specific mechanism of circRNAs in LN remains ambiguous.
In this study, we found that circRNA-0054595, named circRTN4, was significantly increased in mesangial cells and exosomes derived from monocytes of LN. This finding suggested that circRTN4 may be systematically involved in the progression of LN. Clinically, we also found that circRTN4 was upregulated in renal tissues, peripheral blood mononuclear cells (PBMCs) and exosomes of LN patients. Recent studies have shown that circRNAs can also be released in the form of exosomes and transported to responding cells, through which they affect the physiological behavior of recipient cells or mediate pathological injury. Exosome biology heralds the future arena of disease management, especially in immunotherapy, RNA therapy and stem cell therapy31,32,33. Wang et al. suggested that circRNA-002178 could be delivered into CD8 + T cells to induce PD1 expression via exosomes in lung adenocarcinoma34. Additionally, circ_DLGAP4 significantly promoted the proliferation and fibrosis of MC cells in diabetic kidney disease35. Is there a connection between circRTN4 in mesangial cells and monocytes? Subsequent studies have identified that highly expressed circRTN4 in exosomes derived from THP1 cells could effectively upregulate the level of circRTN4 in mesangial cells, which could be partially reversed by knockdown of circRTN4 or inhibition of exosome release in monocytes. These results suggested that upregulated circRTN4 in monocytes may be packaged in exosomes and internalized by glomerular mesangial cells, which results in a peak in circRTN4 levels in mesangial cells, accompanied by the excessive synthesis and secretion of FN. Our study further confirmed the existence of this novel method of communication between immune cells and glomerular cells, which expands research on the potential regulatory functions of circRNAs in the pathological processes of LN.
It is widely believed that proliferative mesangial cells can secrete extracellular matrix, which is one of the major pathogenic events in the progression of LN. Further research showed that high circRTN4 expression notably promoted mesangial cell proliferation by affecting the cell cycle. However, downregulation of circRTN4 suppressed the expression of FN. Our previous study also demonstrated that fibrotic proteins, such as FN and ColIV, played an important role in the ECM of mesangial cells in LN22. It has been well demonstrated that a large proportion of circRNAs are in the cytoplasm, and the most crucial mechanism through which they perform regulatory functions is miRNA sponging15,16,36. Herein, we identified renal circRTN4 to be distributed mainly in the cytoplasm of mesangial cells. Its regulatory potential in regulating FN expression depended on directly interacting with miR-513a-5p. Most importantly, the use of AAV to suppress kidney circRTN4 caused pronounced inhibition of ECM deposition in not only a pristane-induced mouse model of LN but also in MRL/lpr mice, a classic lupus mouse. Additionally, we administered AAV via tail vein injection, aiming to knock down the expression of circRTN4 in PBMCs. These mice also exhibited much less cell proliferation and ECM deposition in glomeruli, which, from another perspective, confirmed the communication between monocytes and mesangial cells in LNs. We conducted the same experiments in vivo using MRL/lpr mice, and the results are shown in the supplementary figure. However, the specific mechanism by which circRTN4 regulates proliferation needs further investigation.
In summary, our research demonstrated that the circRTN4/miR-513a-5p/FN axis played a critical pathological role in mesangial cell dysfunction. Exosomal circRTN4 mediated the cross-talk between monocytes and HRMCs, serving as an effective biomarker for LN detection and a novel therapeutic target.
Data availability
The data that support the findings of this study are available from the corresponding author upon reasonable request.
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Acknowledgements
This research was supported by the China Natural Science Foundation (GZR81700611), the Department of Education of Hebei (ZD2021070, ZD2018006), and the Hebei Education Department Degree Office Higher Education Graduate Innovative Funding Project (CXZZBS2021079).
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S.L., X.F. and X.M. conceived of, designed, and supervised the study. X.M., Y.T., performed experiments, analyzed the data and wrote the manuscript. L.W., H.Z. and F.G. contributed to the qRT–PCR and animal experiments. H.F., R.Y. and L.Y. collected and classified the human tissue samples. J.L., W.Z. and Q.J. provided technical assistance with the experiments. All co-authors have reviewed and approved this version of the manuscript.
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The study was approved by the Medical Ethics Committee of Hebei Medical University (20200095). Written informed consent was obtained from each study participant.
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Miao, X., Tian, Y., Wu, L. et al. CircRTN4 aggravates mesangial cell dysfunction by activating the miR-513a-5p/FN axis in lupus nephritis. Lab Invest 102, 966–978 (2022). https://doi.org/10.1038/s41374-022-00788-6
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DOI: https://doi.org/10.1038/s41374-022-00788-6
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