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To investigate whether autophagy is induced by exercise, we analysed tissues of mice that transgenically express a green fluorescent protein (GFP)-labelled marker of autophagosomes, GFP–LC3 (LC3 is also known as MAP1LC3) (ref. 7), after treadmill exercise. In both skeletal and cardiac muscle, autophagosome (GFP–LC3 puncta) numbers increased after 30 min (∼300 m) of running and reached a plateau at 80 min (∼900 m) (Fig. 1a–c). This was observed in several muscle groups, including the vastus lateralis (thigh muscle) (Fig. 1a–c), soleus, tibialis anterior and extensor digitorum longus (Supplementary Fig. 1). Exercise also resulted in biochemical evidence of skeletal and cardiac muscle autophagy, including conversion of the non-lipidated form of LC3, LC3-I, to the autophagosome-membrane-associated lipidated form, LC3-II, and degradation of the autophagy substrate protein p62 (Fig. 1d). In addition, exercise induced autophagy in other organs involved in glucose and energy homeostasis, such as liver and pancreas, including islet β-cells (Supplementary Fig. 2a–f) and (based on LC3-II conversion) adipose tissue (Supplementary Fig. 2g). Thus, exercise is a newly defined stimulus that induces autophagy in vivo.

Figure 1: Exercise induces autophagy in skeletal and cardiac muscle.
figure 1

a, b, Representative images of GFP–LC3 puncta (autophagosomes) in skeletal (vastus lateralis) (a) and cardiac (b) muscle from GFP–LC3 transgenic mice at serial time points after exercise. Scale bar, 20 μm. c, Quantification of data (mean ± s.e.m. of 10 tissue sections) in a and b. **P < 0.01, ***P < 0.001 (one-way ANOVA). d, Western blot analysis of LC3-I/II (non-lipidated and lipidated forms of MAP1LC3, respectively) and p62 levels in indicated tissue from mice at rest (−) or after maximal exercise (+). Skeletal and cardiac indicate skeletal and cardiac muscle, respectively. e, Co-immunoprecipitation of beclin 1 with BCL2 in muscle tissue from mice at indicated time points after exercise. IP, immunoprecipitate; WB, western blot; WCL, whole cell lysates.

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We found that exercise-induced autophagy in vivo involves disruption of the BCL2–beclin-1 complex. BCL2 is an anti-apoptotic and anti-autophagy protein that inhibits autophagy through a direct interaction with the BH3 domain of the autophagy protein beclin 1 at the endoplasmic reticulum8. Disruption of the BCL2–beclin-1 complex is crucial for stimulus-induced autophagy in mammalian cells8. Beclin 1 immunoprecipitation with BCL2 decreased in muscle within 15 min of exercise and was barely detectable after 30 min (Fig. 1e). Dissociation of the BCL2–beclin-1 complex was not associated with phosphorylation of kinases previously linked to BCL2 phosphorylation, such as JNK and p38 MAPK9 (Supplementary Fig. 3).

To study the physiological functions of exercise-induced autophagy in vivo, we constructed mutant mice that are deficient in stimulus-induced but not basal autophagy. As phosphorylation of three sites in the non-structured loop of human BCL2 is critical for stimulus-induced autophagy in vitro8, we generated knock-in (Bcl2AAA) mice lacking three conserved phosphorylation residues in the non-structured loop region of mouse BCL2: Thr 69, Ser 70 and Ser 84 (homologous to human Ser 87) were replaced by alanines (BCL2 AAA) (Supplementary Fig. 4a–c). Homozygous Bcl2AAA mice were viable and fertile, born in the expected Mendelian ratio, of normal size and weight, and displayed normal histology of major organs (data not shown). Steady-state levels of BCL2 AAA in Bcl2AAA mice were similar to those of wild-type (WT) BCL2 in Bcl2WT mice in skeletal and cardiac muscle, liver, adipose tissue and pancreas (Supplementary Fig. 4d).

Murine embryonic fibroblasts (MEFs) derived from BCL2 AAA mice showed a defect in stimulus-induced autophagy (Fig. 2a, b). In response to starvation, BCL2 underwent phosphorylation, BCL2 dissociated from beclin 1, and autophagy was induced in MEFs from isogenic wild-type mice. However, in BCL2 AAA MEFs, BCL2 phosphorylation was absent (as measured by p32 labelling), the BCL2–beclin-1 complex was not disrupted, and less autophagy was induced. Levels of basal autophagy were similar in wild-type and BCL2 AAA MEFs. Similar findings were observed in vivo in skeletal and cardiac muscle (Supplementary Fig. 5); autophagosome numbers were similar at baseline in wild-type and BCL2 AAA mice expressing GFP–LC3 but failed to increase in GFP–LC3 BCL2 AAA mice in response to 48 h starvation.

Figure 2: Non-phosphorylatable BCL2 AAA knock-in mutations block BCL2 phosphorylation, BCL2–beclin 1 dissociation, and starvation- and exercise-induced autophagy.
figure 2

a, Analysis of BCL2 phosphorylation (detected by anti-BCL2 immunoprecipitation and autoradiography of 32P-labelled cells) and beclin 1 co-immunoprecipitation with BCL2 in wild-type (WT) or BCL2 AAA MEFs grown in normal media or subjected to 4 h Earle’s balanced salt solution (EBSS) starvation. p-BCL2, phospho-BCL2. b, Quantification of GFP–LC3 puncta (autophagosomes) in MEFs of indicated genotype in normal growth conditions or starvation conditions. Data represent mean ± s.e.m. for 100 cells per well of triplicate samples per condition. Similar results were observed in three independent experiments. c, Representative images of GFP–LC3 puncta (autophagosomes) in skeletal and cardiac muscle of GFP–LC3 wild-type and GFP–LC3 BCL2 AAA mice before exercise, after 80 min exercise, or after 75% of maximal exercise capacity. Scale bar, 20 μm. d, Quantification of data (mean ± s.d. of 4 mice per experimental group) in c. e, Western blot analysis of LC3-I/II and p62 levels in indicated tissue from mice of indicated genotype at rest (−) or after maximal exercise (+). Skeletal and cardiac indicate skeletal and cardiac muscle, respectively. f, Co-immunoprecipitation of beclin 1 with BCL2 in muscle tissue from mice of indicated genotype at rest (−) or after 30 min of exercise. WCL, whole cell lysates. NS, not significant. *P < 0.05, **P < 0.01, ***P < 0.001, one-way ANOVA for comparison between groups; †P < 0.001, two-way ANOVA for comparison of magnitude of changes between different groups in mice of different genotypes.

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To evaluate whether BCL2 AAA mice are deficient in exercise-induced autophagy, we exercised GFP–LC3 wild-type mice and GFP–LC3 BCL2 AAA mice for a fixed time and fixed distance (80 min (∼900 m)) and at 75% of their maximal running capacity (see Fig. 3a). Under both conditions, BCL2 AAA mice displayed marked impairment of exercise-induced upregulation of skeletal and cardiac muscle (as measured by numbers of GFP–LC3 puncta) (Fig. 2c, d and Supplementary Fig. 1b). BCL2 AAA mice also exhibited less exercise-induced LC3-II conversion and p62 degradation in skeletal and cardiac muscle (Fig. 2e), impaired autophagic responses in liver and pancreatic β-cells (Supplementary Fig. 2c, f), and defective exercise-induced dissociation of the BCL2–beclin-1 complex in muscle (Fig. 2f). Thus, non-phosphorylatable BCL2 does not alter basal autophagy in vivo, but prevents autophagy activation in response to starvation and exercise. This blockade of autophagy activation was not associated with increased cell death (Supplementary Fig. 6).

Figure 3: BCL2 AAA mice show deficient exercise endurance and alterations in muscle glucose metabolism.
figure 3

a, Maximal treadmill running distance for mice of indicated genotype. Data represent mean ± s.e.m. of 5 mice per group. b, Representative haematoxylin and eosin (H & E) and periodic acid-Schiff (PAS) staining in tibialis anterior muscle sections from mice of indicated genotype. Scale bar, 20 μm. c, d, Plasma glucose (c) and insulin (d) levels in mice of indicated genotype at rest, after 80 min exercise (∼900 m), or maximal exercise. Data represent combined mean ± s.e.m. for 9–11 mice per group from three independent cohorts; similar results were observed in each cohort. e, Representative images of GLUT4 immunofluorescence staining in vastus lateralis muscle of mice of indicated genotype before and after maximal exercise. Scale bar, 20 μm. For b and e, similar results were observed in 3 mice per group. f, Western blot analysis of AMPK phosphorylation (p-AMPK (Thr 172)) in vastus lateralis muscle lysates from mice of indicated genotype at indicated time after exercise. g, Maximal treadmill running distance for mice of indicated genotype. Data represent mean ± s.e.m. of 4–6 male mice per group. h, Soleus muscle 14C-deoxyglucose uptake during treadmill exercise in mice of indicated genotype. Data represent mean ± s.e.m. of 3 mice per group. *P < 0.05, **P < 0.01, ***P < 0.001, one-way ANOVA for comparison between groups; †P < 0.05, ††P < 0.01, two-way ANOVA for comparison of magnitude of changes between different groups in mice of different genotypes. NS, not significant.

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The deficient exercise-induced autophagy in BCL2 AAA mice was accompanied by lower maximal exercise capacity (Fig. 3a). BCL2 AAA mice had similar levels of serum lactate after maximal exercise, similar baseline muscle strength, and similar baseline cardiac function and size as wild-type mice (Supplementary Fig. 7). Characterization of various muscle groups (soleus, tibialis anterior and extensor digitorum longus) from wild-type and BCL2 AAA mice at baseline and after 80 min of exercise revealed no differences in weight, fibre cross-sectional area, morphology (haematoxylin and eosin staining), fibre type analysis, glycogen content, or mitochondrial content and functionality (Fig. 3b and Supplementary Figs 8–10). These analyses suggest that differences in baseline cardiac and skeletal muscle properties do not account for decreased exercise endurance in BCL2 AAA mice.

During strenuous exercise, mammals undergo metabolic changes to increase skeletal muscle glucose uptake/utilization efficiency, including increased insulin sensitivity and redistribution of glucose transporters, such as GLUT4 (also known as SLC2A4), to the plasma membrane10,11, which is essential for exercise-stimulated glucose uptake12. However, BCL2 AAA mice demonstrated impaired exercise-induced increase in insulin sensitivity, as reflected by less of a decline in plasma glucose (Fig. 3c) and plasma insulin (Fig. 3d) levels than in wild-type mice. Also, unlike wild-type mice, BCL2 AAA mice failed to exhibit increased plasma membrane GLUT4 localization in the vastus lateralis and soleus muscles following maximal or 80 min exercise, respectively (Fig. 3e and Supplementary Figs 11a and 12a) and they exhibited lower levels of radiolabelled glucose uptake in soleus muscle (Fig. 3h).

Adenosine monophosphate-activated protein kinase (AMPK) has a central role in enhanced GLUT4 plasma membrane localization and skeletal muscle glucose uptake during exercise13. BCL2 AAA mice had a notable decrease in AMPK activation, as measured by levels of phosphorylation at residue threonine 172, in both the vastus lateralis (Fig. 3f and Supplementary Fig. 11b) and in the soleus (Supplementary Fig. 12b) muscles. Phosphorylation of the downstream AMPK target acetyl-CoA carboxylase (ACC) paralleled AMPK phosphorylation (Supplementary Fig. 13), providing additional support for a defect in exercise-induced AMPK activation in BCL2 AAA mice.

No differences were observed in phosphorylation of CaMK1, a downstream target of the Ca2+-stimulated kinase CaMKKβ (which is upstream of AMPK in certain contexts)13 (Supplementary Fig. 13b), suggesting that differences in levels of AMPK activation between wild-type and BCL2 AAA mice are not due to altered Ca2+ homeostasis. They are also probably unrelated to possible effects of BCL2 on mitochondrial function, because phosphorylated BCL2 resides at the endoplasmic reticulum14 and markers of mitochondrial function did not differ in the muscles of BCL2 AAA and wild-type mice (Supplementary Fig. 10). Differences in insulin signalling molecules also did not explain the altered glucose homeostasis in exercised BCL2 AAA mice, because at late time points during exercise, decreased (not increased) AKT activation and mTOR activation was observed in muscle of both wild-type and BCL2 AAA mice (Supplementary Fig. 13a). No differences were observed in muscle phosphorylation of the AKT substrate AS160 (also known as TBC1D4), or levels of the muscle-specific forkhead transcription factor target atrogin 1 (also known as FBXO32), in response to exercise or between genotypes.

To confirm that the observed defects in exercise-induced endurance and muscle glucose metabolism are due to defective autophagy, we examined mice with allelic loss of the autophagy gene beclin 1 (Becn1), which have decreased beclin 1 protein expression and decreased starvation-induced autophagy in skeletal muscle15. Similar to BCL2 AAA mice, Becn1+/− mice exhibited deficient exercise-induced autophagy in skeletal muscle (Supplementary Fig. 14a, b), normal muscle strength (Supplementary Fig. 14c), decreased maximal treadmill running distance (Fig. 3g), impaired exercise-induced GLUT4 plasma membrane localization (Supplementary Fig. 14d) and muscle glucose uptake (Fig. 3h), and lower levels of exercise-induced muscle AMPK activation (phospho-AMPK and its target, phospho-ACC) (Supplementary Fig. 14e) than wild-type controls. The similarity of the phenotypes of BCL2 AAA and Becn1+/− mice provides strong support for a role of deficient beclin 1 activity, rather than other BCL2-regulated functions, in the impairment of exercise endurance, glucose uptake and AMPK activation in BCL2 AAA mice.

AMPK activates autophagy in response to low energy conditions by sensing the cellular ratio of AMP to ATP13. Deficient AMPK activation in BCL2 AAA and Becn1+/− mice during exercise raised the possibility that, similar to observations in vitro16, the autophagy pathway may function in vivo in a feed-forward manner in AMPK activation. To evaluate whether impaired exercise-induced AMPK activation in vivo is due to deficient autophagy, rather than potential autophagy-independent effects of the BCL2 AAA mutation or monoallelic loss of beclin 1, we examined exercise-induced AMPK activation in Atg16l1HM mice that are hypomorphic for ATG16L1 (ref. 17), an essential autophagy protein that specifies the LC3 lipidation site for autophagosomal membrane biogenesis18. Atg16l1HM mice had a significant reduction in ATG16L1 protein expression in skeletal muscle and a defect in exercise-induced autophagy in muscle lysates after 80 min of exercise (Supplementary Fig. 15a, b). This defect in exercise-induced autophagy was associated with decreased exercise-induced AMPK phosphorylation and ACC phosphorylation (Supplementary Fig. 15c).

Together, our in vivo studies in BCL2 AAA, Becn1+/− and Atg16l1HM mice suggest that cellular autophagy function is partially required for normal levels of exercise-induced muscle AMPK activation. The mechanism underlying this requirement is not yet known, but is unlikely to be caused by non-specific effects of the mouse mutations on AMPK activation as the direct AMPK activator, the AMP analogue 5-aminoimidazole-4-carboxamide riboside (AICAR), induced AMPK activation normally in BCL2 AAA, Becn1+/− and Atg16l1HM MEFs (Supplementary Fig. 16).

We next examined whether exercise-induced autophagy is required for the beneficial metabolic effects of long-term exercise training, using a high-fat diet (HFD) model of obesity and impaired glucose tolerance6,19. Age-matched cohorts of wild-type and BCL2 AAA mice were fed a HFD for four weeks; the HFD was continued for an additional 8 weeks either combined with 50 min of daily treadmill exercise or with no exercise (Supplementary Fig. 17a). In both wild-type and BCL2 AAA mice, HFD led to body weight gain (Supplementary Fig. 17b), which was probably due to increased fat mass (Supplementary Fig. 18a), as no differences in lean mass or muscle fibre size were observed (Supplementary Fig. 18). HFD led to modest suppression of baseline autophagy in skeletal and cardiac muscle as measured by levels of LC3-II conversion and p62 in tissue lysates (Supplementary Fig. 19). Ultrastructural analyses of the liver and pancreas did not reveal any differences in HFD versus regular diet animals, in wild-type versus BCL2 AAA mice, or in non-exercised versus exercised animals, except for hepatic lipid droplet accumulation in all HFD-fed groups (Supplementary Fig. 20). Although BCL2 AAA mice were more sensitive to HFD-induced obesity, 8 weeks of daily exercise reduced the magnitude of weight gain similarly in BCL2 AAA and wild-type mice (Supplementary Fig. 17b). Thus, the BCL2 AAA mutation did not alter the response of mice to HFD with respect to muscle fibre size, the morphology of liver and pancreas, or the effect of exercise on HFD-induced obesity.

However, BCL2 AAA mice failed to exhibit normal exercise-induced protection against HFD-induced impaired glucose tolerance. Before the administration of HFD, wild-type and BCL2 AAA mice had similar clearance rates in oral glucose tolerance tests (Fig. 4a). Four weeks of HFD led to impaired glucose tolerance in both genotypes versus regular diet control groups (Fig. 4b); the magnitude of this impairment was similar in BCL2 AAA and wild-type mice despite more weight gain in the BCL2 AAA mice. However, exercise training markedly improved glucose tolerance in HFD-fed wild-type mice but not in autophagy-deficient BCL2 AAA mice (Fig. 4c and Supplementary Fig. 21). This failure of BCL2 AAA mice to show improved glucose tolerance is unlikely to be due to deficient insulin production, because at the end of the study HFD-fed wild-type and BCL2 AAA mice displayed similar circulating fasting insulin levels (Supplementary Fig. 22a), similar levels of insulin secretion in response to oral glucose challenge (Supplementary Fig. 22b), and similar pancreatic β-cell morphology (Supplementary Fig. 20b). These results suggest that BCL2-regulated functions are essential for chronic exercise-mediated protection against HFD-induced glucose intolerance. We speculate that, as in acute exercise, this may involve the dynamic interplay of autophagy induction and AMPK activation.

Figure 4: Long-term exercise training protects wild-type but not BCL2 AAA mice from HFD-induced glucose intolerance.
figure 4

a, b, Oral glucose tolerance test (OGTT) before (a, week 0) and after (b, week 4) 4 weeks of HFD. c, d, OGTT (c) and serum leptin and adiponectin levels (d) after 8 weeks of daily exercise. For a–d, results represent the mean ± s.e.m. for 4–5 mice per group. E, exercise; NE, no exercise; RD, regular diet . *P < 0.05, **P < 0.01, (c, one-way ANOVA; d, Wilcoxon rank test). NS, not significant.

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HFD-induced obesity is associated with several other metabolic changes, including increased levels of serum leptin, an appetite-inhibiting adipokine;20 reduced levels of circulating adiponectin21, an antidiabetic adipokine22,23,24; and increased serum triglycerides and cholesterol. In HFD-fed mice, baseline levels of leptin were higher in BCL2 AAA mice than in wild-type mice, and 8 weeks of exercise decreased serum leptin in wild-type but not in BCL2 AAA mice (Fig. 4d). Although adiponectin levels in HFD-fed mice were similar in the non-exercised wild-type and BCL2 AAA groups, they were significantly increased in the exercised wild-type mice versus the exercised BCL2 AAA mice (Fig. 4d). Both serum triglycerides and cholesterol increased in wild-type and BCL2 AAA HFD-fed mice; with exercise, the values returned to those observed in animals fed a regular diet in wild-type but not BCL2 AAA mice (Supplementary Fig. 23). Thus, the BCL2 AAA mutation impaired the beneficial effects of exercise on metabolic changes induced by a HFD.

The HFD-fed, daily exercised wild-type mice were more metabolically active than their BCL2 AAA counterparts, as demonstrated by elevated levels of oxygen consumption, CO2 production and heat generation during a 12 h night interval when the mice were not exercised (Supplementary Fig. 24a). In addition, in vastus lateralis muscle, wild-type mice had elevated induction of messenger RNA for UCP1, Ucp1, a mitochondrial uncoupling protein mainly expressed in brown adipose tissue that contributes to thermogenesis and energy expenditure25 (Supplementary Fig. 24d). These changes were probably due to improved metabolic fitness in response to exercise rather than alterations in food intake, spontaneous physical activity, or general mitochondrial function. No differences were observed in daily food intake in exercised HFD-fed wild-type and BCL2 AAA mice (Supplementary Fig. 24b). Spontaneous physical activity was similar in HFD-fed non-exercised wild-type and BCL2 AAA mice, although there was a trend towards decreased spontaneous physical activity in the exercised BCL2 AAA mice (Supplementary Fig. 24c). No changes were observed with exercise in either genotype in mRNA levels of the skeletal muscle-expressed uncoupling proteins UCP2 or UCP3, or the mitochondrial proteins cytochrome b and c (Supplementary Fig. 24d, e).

The HFD study suggests that increased autophagy triggered by exercise may be critical for improving impaired glucose tolerance and metabolism in diet-induced obesity. However, we cannot definitely conclude that lack of exercise-induced improvement in glucose tolerance in HFD-fed BCL2 AAA mice is caused by deficient exercise-induced autophagy; it is possible that other effects of the BCL2 AAA mutation are responsible for this phenotype. Nonetheless, given our findings in acute exercise (which demonstrate impaired muscle glucose uptake, GLUT4 plasma membrane localization and AMPK activation in autophagy-deficient animals), it seems plausible that alterations in exercise-induced skeletal muscle glucose metabolism in autophagy-deficient animals may also contribute to the failure of exercise to reverse HFD-induced metabolic abnormalities.

Our findings demonstrate that exercise is a potent inducer of autophagy, and that acute and chronic exercise enhances glucose metabolism in mice capable of inducing autophagy but not in autophagy-deficient mice. These beneficial metabolic effects (as well as exercise- and starvation-induced autophagy) are blocked by a mutation in BCL2 that prevents its release from an inhibitory interaction with the autophagy protein beclin 1. Thus, BCL2 has previously undescribed essential roles in the in vivo regulation of stimulus-induced autophagy as well as glucose metabolism. We propose that BCL2-regulated autophagy activation contributes to the beneficial metabolic effects of exercise, and that manipulation of the autophagy pathway and/or the function of the autophagy inhibitory BCL2 protein may be a logical strategy to mimic the health effects of exercise and to prevent or treat impaired glucose metabolism. More broadly, on the basis of this newly discovered link between exercise, autophagy and altered metabolism, we speculate that autophagy may represent a cellular mechanism by which exercise prolongs life and protects against cancer, cardiovascular disorders and inflammatory diseases1.

Methods Summary

Mouse strains

GFP–LC3 transgenic7, Becn1+/−(ref. 15) and Atg16l1HM (ref. 17) mice have been described. The generation of mice with a knock-in mutation in Bcl2 that results in Thr69Ala, Ser70Ala and Ser84Ala mutations in BCL2 (BCL2 AAA) is described in Methods.

Exercise studies

Acute and chronic exercise studies were performed using a treadmill protocol described in Methods.

Autophagy assays

Autophagy was measured by visualizing GFP–LC3 puncta by fluorescence microscopy in MEFs or tissue sections from mice with transgenic expression of GFP–LC3, or by western blot analysis of LC3-II conversion and p62 levels in tissue lysates.

Metabolic analyses

Metabolic and blood parameters in the acute and chronic exercise studies were measured as described in Methods.

Online Methods

Mouse strains

GFP–LC3 transgenic, Becn1+/− and Atg16l1HM mice have been previously described7,15,17. For the construction of a mouse strain with knock-in mutations in the phosphorylation sites in the non-structured loop of BCL2 (Bcl2AAA mice), BAC clones (Incyte) were screened for the presence of Bcl2 using the following primers: BCL2 5′, GTGGGGCGGGAGTCGGGACT; BCL2 3′, GACCCAGAATCCACTCACAC. The Bcl2 BAC clone was digested by BglII, subcloned into pSP72, and a puromycin resistance marker flanked by FRT sites (SalI fragment of pPGKPuro, cloned into pFRT) was blunt cloned into a BsaBI site 3′ of exon II. A mutant allele was generated by subcloning a PstI fragment from the coding region. Amino acid residues Thr 69, Ser 70 and Ser 84 (homologous to human Ser 87) were changed to alanine in two steps using the Quickchange PCR (Stratagene) and the following primer sets: TSAA 5′, GAGATGGCTGCCAGGGCGGCTCCTCTCAGGCCCC; TSAA 3′, GGGGCCTGAGAGGAGCCGCCCTGGCAGCCATCTC; S84A 5′, GCTGGGCCTGCGCTCGCCCC TGTGCCACCATG; S84A 3′, CATGGTGGCACAGGGGCGAGCGCAGGCCCAGC. The targeting construct 7.1AAA was electroporated into RW4 embryonic stem cells (129 Sv/J), and 36 h later, clones were selected with puromycin, picked and screened by Southern blot analysis with the probes indicated in Supplementary Fig. 4a. A 1.7 kb shift upwards indicative of the mutant allele was detected on Southern blots in 2/300 clones as the targeted locus (Supplementary Fig. 4b). These clones were tested for normal karyotype and used to inject blastocysts from C57BL/6J donors. Mice with germline transmission were bred to mice expressing FLP from the β-actin promoter (Jackson Laboratories: B6; SJLTgN(ACTFLPe)9205Dym), and offspring were screened for deletion of the puromycin selection marker. To screen for the presence of the mutation following excision of the selectable marker, PCR with 5′ and 3′ Bcl2 primers was performed, and digestions were performed with BglI or AatII enzymes; BglI cuts the amplified fragment only if the T69AS70A site is present, while AatII cuts only the wild-type sequence for the same region (Supplementary Fig. 4c). Using this scheme, homozygous Bcl2AAA mutants were identified by the presence of PCR fragments cleaved only by BglI and not AatII, whereas wild-type mice were identified by the presence of PCR fragments cleaved only by AatII and not BglI. Bcl2AAA mice were backcrossed for more than ten generations to C57/B6 mice (Jackson Laboratories), and homozygous Bcl2AAA and Bcl2WT offspring were used in all studies.

Cell lines

Primary MEFs were established either from Bcl2AAA and Bcl2WT mice, the offspring of Bcl2AAA and Bcl2WT mice crossed with GFP–LC3 transgenic mice, Becn1+/− and Becn1+/+ mice, and Atg16l1HM and Atg16l1WT at embryonic day 13.5 and cultured as described26.

Radiolabelling and co-immunoprecipitation from MEFs

MEFs derived from Bcl2AAA and Bcl2WT mice were cultured overnight in labelling medium (phosphate-free DMEM with 10% dialysed FBS) and then cultured in starvation medium (EBSS minus phosphate) or labelling medium for 4 h containing 2 mCi ml−1 32P-orthophosphate. Cells were lysed in lysis buffer containing 50 mM Tris (pH 7.9), 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, proteinase inhibitor cocktail (Roche Applied Sciences) and halt phosphatase inhibitor cocktail (Thermo Scientific), and were subjected to immunoprecipitation with a monoclonal anti-BCL2 antibody (Santa Cruz Biotechnology, 1:50). Eluates were separated by SDS–PAGE and detected by anti-beclin 1 antibody (Santa Cruz Biotechnology, 1:200), anti-BCL2–HRP antibody (C2, Santa Cruz Biotechnology, 1:100) and autoradiography.

Co-immunoprecipitations from muscle tissue

Vastus lateralis (thigh muscle) was dissected and homogenized in lysis buffer containing 50 mM Tris (pH 7.9), 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, proteinase inhibitor cocktail (Roche Applied Sciences) and halt phosphatase inhibitor cocktail (Thermo Scientific), and subjected to immunoprecipitation with a monoclonal anti-BCL2 antibody (Santa Cruz Biotechnology, 1:50). Eluates were separated by SDS–PAGE and detected by anti-beclin 1 antibody (Santa Cruz Biotechnology, 1:200) and anti-BCL2–HRP antibody (C2, Santa Cruz Biotechnology, 1:100) and autoradiography.

Mouse exercise studies

For acute exercise studies, 8-week-old (wild type, BCL2 AAA and Atg16l1HM) or 12-week-old (Becn1+/− and wild-type Becn1+/+ littermate) mice were acclimated to and trained on a 10° uphill Exer 3/6 open treadmill (Columbus Instruments) for 2 days. On day 1 mice ran for 5 min at 8 m min−1 and on day 2 mice ran for 5 min at 8 m min−1 followed by another 5 min at 10 m min−1. On day 3, mice were subjected to a single bout of running starting at the speed of 10 m min−1. Forty minutes later, the treadmill speed was increased at a rate of 1 m min−1 every 10 min for a total of 30 min, and then increased at the rate of 1 m min−1 every 5 min until mice were exhausted. Exhaustion was defined as the point at which mice spent more than 5 s on the electric shocker without attempting to resume running. Total running time was recorded and total running distance was calculated for each mouse.

For long-term exercise training, male Bcl2WT or Bcl2AAA mice (8 weeks old) were randomly divided into three cohorts, including: (1) mice fed a regular diet (Harlan Teklad) without daily exercise, (2) mice fed a HFD containing 60% fat (Research Diets) without daily exercise, and (3) mice fed a HFD with daily exercise. Prior to initiation of exercise, mice were fed a HFD for 4 weeks. At the end of the fourth week, mice in the exercise groups were acclimated to treadmill running for 2 days as in the acute exercise studies, and then were trained on the treadmill with 10° uphill incline for 50 min d−1, 5 d week−1 at 17 m min−1 for 8 weeks. Mice were given a HFD during the 8-week training period. All animal procedures were performed in accordance with institutional guidelines and with approval from the Institutional Animal Care and Use Committee.

Autophagy analyses

MEFs expressing GFP–LC3 were cultured in normal or starvation (EBSS, Earle’s balanced salt solution) medium for 4 h, and GFP–LC3 puncta were quantified by fluorescence microscopy as described27. For assessment of autophagy in vivo following starvation or exercise, 8-week-old Bcl2WT or Bcl2AAA GFP–LC3 mice or Becn1+/+ or Becn1+/− GFP–LC3 mice were either subjected to starvation for 48 h or exercised for the indicated time period, anaesthetized by isoflurane, and perfused with 4% paraformaldehyde (PFA). Skeletal muscle (vastus lateralis, tibialis anterior, extensor digitorum longus and soleus), heart (left ventricle), pancreas and liver tissues were fixed in 4% PFA overnight, 15% sucrose for 4 h and 30% sucrose overnight before frozen sections were prepared. The number of GFP–LC3 puncta per unit area of tissue was quantified by fluorescence microscopy as described15. Autophagy in skeletal and cardiac muscle, liver, pancreas and adipose tissue during baseline conditions and after exercise was also analysed by western blot analysis of tissue extracts with antibodies against LC3 and p62 (see below for details).

Immunofluorescence studies

For immunofluorescence staining of frozen muscle and pancreatic sections, slides were heated at 50 °C for 10 min, rehydrated in 100%, 95% and 70% ethanol, washed 3 × 5 min in PBS, blocked with 1% goat serum and immunostained with a rabbit anti-mouse GLUT4 antibody (Alpha Diagnostic, 1:100 dilution) (muscle samples) and an Alexa Fluor 594 donkey anti-rabbit secondary antibody (Invitrogen, 1:1,000 dilution) or with a guinea pig anti-swine insulin antibody (Dako, 1:500 dilution) (pancreatic samples) and an Alexa Fluor 594 goat anti-guinea pig secondary antibody (Invitrogen, 1: 500 dilution). Immunofluorescence studies on skeletal muscle sections with anti-laminin and anti-type I myosin heavy chain antibodies were performed as previously described28. Immunofluorescence images were taken using a Zeiss Axioplan2 microscope or Leica TCS SP5 confocal microscope.

Muscle morphology and function studies

Sections were stained with haematoxylin and eosin to visualize tissue architecture following standard protocols. Metachromatic ATPase staining and measurement of fibre cross-sectional area were performed as previously described28. Periodic acid-Schiff staining for carbohydrates was performed according to standard protocols29. Succinic dehydrogenase staining on cryosections was carried out using a 0.2 M phosphate buffer at pH 7.6. For staining, 270 mg succinic acid and 10 mg nitro blue tetrazolium were freshly dissolved in 10 ml phosphate buffer and incubated with sections for 1 h.

To measure muscle strength, a modified mesh grip assay was applied30. Briefly, mice were placed on the wired mesh of cage tops. When they firmly grabbed the mesh, the cage top was flipped and held at a height of 30 cm above the bench until the mice released their grip. The time for each mouse to remain on the mesh was recorded. TUNEL staining of muscle sections to detect apoptosis was performed according to the manufacturer’s instructions (ApopTag Peroxidase In situ Apoptosis Detection Kit, Millipore), using Sigma FAST 3,3′-diaminobenzidine (DAB) tablets as the peroxidase substrate.

Electron microscopy

Mice were euthanized, and liver and pancreas were rapidly fixed in 2.5% glutaraldehyde in 0.1 M cacodylate buffer. Electron microscopy was performed as previously described31.

Mouse metabolic studies and blood tests

Food intake, O2 consumption, CO2 production, heat production and physical activity were measured in TSE metabolic chambers (TSE Systems) over a 4 day period. Mice in the exercise group were removed from the chambers and allowed to run for 50 min daily as in the above protocol during the day (light period). Metabolic measurements were performed for 12 h daily during the dark period. Fat mass and lean tissue mass were determined using the Bruker Minispec mq10 scan system. Plasma glucose, lactate, cholesterol and triglycerides were measured using the Vitros 250 system (Ortho-Clinical Diagnostics). Plasma insulin (Crystal Chem), serum leptin (Crystal Chem) and adiponectin (Millipore) levels were determined using commercial ELISA kits. Glucose tolerance tests were performed by oral glucose injection (1 g kg−1) after a 3 h fast. Blood was drawn from tail veins at the indicated time points after glucose injection and serum glucose levels were analysed using commercial glucose assay reagents (Sigma, Cat# 6918, P7119, F5803).

Echocardiography

Cardiac function was assessed by echocardiography, using a Visualsonic Vevo 2100 ultrasound machine equipped with a 30-Mhz transducer applied to the chest wall. Ventricular dimensions and ejection fraction were assessed using short axis view in two-dimensional and three-dimensional modes using the onboard VisualSonics cardiac analysis package.

Muscle glucose uptake assays

Surgical catheterization of the jugular vein was performed on each mouse. At day 4 after catheterization, mice were transferred to clean cages at 9:00 a.m. to begin a 4 h fast. Mice then ran on a treadmill for 50 min using the exercise protocol described above. At t = 50 min, a 13 μCi bolus of 14C-deoxyglucose was injected intravenously and mice resumed running for another 25 min according to the exercise protocol described above before euthanasia. Skeletal muscle (soleus) and brain tissues were dissected and homogenized in 1.5 ml 0.5% perchloric acid. 14C-deoxyglucose counts were determined in homogenized samples as previously described32 and muscle values were normalized to the counts in the brain.

Western blot analyses

Mouse tissue extracts were prepared by homogenizing tissues in lysis buffer containing 50 mM Tris (pH 7.9), 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, proteinase inhibitor cocktail (Roche Applied Sciences) and halt phosphatase inhibitor cocktail (Pierce), and subjected to western blot analysis with anti-LC3 (Novus Biologicals, 1:500), anti-p62 (BD Biosciences, 1:500 dilution; Progen (C-terminal specific), 1:1,000 dilution). Anti-p-CaMKI (Santa Cruz Biotechnology, 1:100), anti-CaMKI (Santa Cruz Biotechnology, 1:300), anti-BCL2 (Santa Cruz Biotechnology, 1: 100), anti-AMPK (Cell Signaling, 1:1,000), anti-p-AMPK (Cell Signaling, 1:1,000), anti-JNK (Cell Signaling, 1:400), anti-p-JNK (Cell Signaling, 1:500) anti-AS160 (Millipore, 1:400) anti-p-AS160 (Millipore, 1:100), anti-4E-BP1 (Cell Signaling, 1:1,000), anti-p-4E-BP1 (Cell Signaling, 1:1,000), anti-p-ACC (Millipore, 1:500) anti-AKT (Cell Signaling, 1:600), anti-p-AKT (Cell Signaling, 1:500), anti-p38 (Cell Signaling, 1:500), anti-p-p38 (Cell Signaling, 1:400), anti-atrogin-1 (ECM Biosciences, 1:400), ATG16L1 (Sigma, 1:1,000) and anti-actin (Santa Cruz Biotechnology, 1:3,000) antibodies.

For in vitro assessment of AMPK activation, MEFS derived from Bcl2AAA and Bcl2WT mice, Becn1+/− and Benc1+/+ mice, and Atg16l1HM and Atg16l1WT mice were treated with 2 mM of the AMP analogue AICAR, or DMSO vehicle for 2 h. Whole-cell lysates were prepared, and AMPK and phospho-AMPK levels were determined by western blot analysis. For quantification, the relative intensity values of western blot bands were normalized to that of the first lane (set as 1) in the wild-type non-exercised group.

Statistical analyses

ANOVA approaches were used to compare values among different experimental groups for data that met the normality assumption. One-way ANOVA was used for comparison between two groups. Two-way ANOVA was used for comparison of the magnitude of changes between two different groups in mice of two different genotypes. The normality assumption for the ANOVA model was checked using residual plots. When the assumption was violated, the data were log-transformed in order to meet the assumption. For data sets in which log transformation was inadequate to meet the analysis assumption, the non-parametric Wilcoxon rank-sum test was used.

Real-time PCR analyses

RNA isolation from muscle tissues and real-time RT–PCR were performed as previously described28. The following Sybr Green primers were used: β-actin: forward, CTGGCTCCTAGCACCATGAAGAT; reverse, GGTGGACAGTGAGGCCAGGAT; UCP1: forward, TCAGGATTGGCCTCTACGAC; reverse, TAAGCCGGCTGAGATCTTGT; UCP2: forward, TGCCCGTAATGCCATTGTC; reverse, AGTGGCAAGGGAGGTCATCT; cytochrome c: forward, GTCTGTTCGGGCGGAAGACAG; reverse, GGGGAGAGGATACCCTGATGG; and cytochrome b: forward, ATTCATTGACCTACCTGCCC; reverse, TCTGATGTGTAGTGTATGGC. The following Tagman primers were used: PPARGC1α (PGC1α): Mm00447183_m1; myoglobin: Mm00442968_m1; PPARGC1β (PGC1β): Mm01258518_m1; MYH7 (MHC Type I): Mm00600555_ml; MYH1 (MHC Type IId/x): Mm01332488_g1; MYH2 (MHC Type IIa): Mm01332564_m1; and GAPDH: Mm99999915_g1.