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The authors’ model (box 1 of ref. 1) is built around the (BMP inhibitor) Chordin-facilitated transport of two members of the BMP family of ligands, BMP (BMP2/4/7), the total amount of which is preserved, and ADMP, which is produced only in the dorsal organizer but concentrates ventrally and scales along the dorsal–ventral axis at blastula stage.

The paper is based on the assumption that dorsal embryonic halves produce well-proportioned (scaled) tadpoles, which is in contrast to existing data. Kageura et al.2 show that removing ventral cells from the eight-cell blastula (series 15, 17) results in normal heads attached to a small body. This is in accordance with standard fate maps that assign most of what is conventionally called ventral in the blastula to posterior tissue in the tadpole3. It is right–left half-embryos that will reproduce correctly proportioned half-size tadpoles2. The quoted paper by Cooke4 examined only mesoderm patterning in transverse sections of tailbud embryos. Therefore, dorsal half-embryos do not scale in the sense defined by the authors. We henceforth focus on molecular evidence contradicting the presented theory construed as a model for embryonic patterning.

In the frog a twofold change in morphogen levels can elicit different cell fates5. Because ligands cannot be directly measured, nuclear Smad1/5/8 transcription factor is the best measure for total BMP signalling6. Experiments in frog7 and fish8 show at most a fourfold variation versus the 102 to 104 range required for scaling in the model.

The model requires that total BMP activity derives predominantly from ADMP, yet BMP depletion (figure 2H in ref. 9) has a stronger phenotype than ADMP-depletion (figure 2H in ref. 10), resulting in embryos with disproportionately large heads8,9 similar to dorsal half-embryos (figure 3C in ref. 10). BMP4 injection significantly ventralizes the embryo (figure 1H in ref. 9), yet the model does not constrain the total amount of BMP or its initial location, because ‘shuttling’ actively concentrates it on the ventral side.

Experiments in figure 3 of ref. 1 were performed to demonstrate Chordin-dependent shuttling. BMP4 is used instead of ADMP, and the protein distribution is shown in mid–late gastrula, although BMP must act before early gastrulation to affect dorsal–ventral patterning significantly11. Labelled BMP4 is localized in endoderm and not ventral mesoderm as in the schematic of figure 3a of ref. 1. Other explanations for the localization of injected BMP4, such as secretion into the blastocoel cavity and ectopic uptake12, need to be addressed. The Chordin-depleted embryos used as controls still show movement of injected BMP4, and the phenotype undercuts the larger message given that such embryos have well-defined axes13. The complete model that addresses these questions (supplementary information 6a–h of ref. 1) contains over 30 free constants to explain essentially qualitative data; a number so large as to render the predictions questionable.

Axis duplication experiments (figure 4 of ref. 1) are taken as evidence for shuttling: the authors assert that the (well-known) expression of ventral markers between the two axes is evidence for their mode of transport. However, there must be a maximum in BMP signalling between the two axes because it is suppressed in each. Reaction diffusion models14,15 show that ordinary diffusion, as opposed to facilitated diffusion through shuttling, can generate patterns consistent with the qualitative data presented (our Fig. 1).

Figure 1: Morphogen profiles after axes duplication (dashed lines) compared with the wild-type embryo (solid lines) from a reaction diffusion model14.
figure 1

The gene network is adapted from figure 3L in ref. 10 and involves self-sustained ventral and dorsal centres. The concentration of the ventral BMP marker in the lateral region between the duplicated axes is clearly reproduced. (The inhibitors, ADMP and Sizzled, diffuse rapidly, the other species slowly. Activation and repression are modelled as Hill functions and summarize more complex biochemistry. The equations and parameters that were solved to produce Fig. 1 are available from the authors.

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In summary, we feel it is incorrect to appeal to qualitative data beyond the onset of gastrulation to support a model for blastula patterning, because other layers of regulation may intervene.