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| Open AccessA unified web cloud computing platform MiMedSurv for microbiome causal mediation analysis with survival responses
- Hyojung Jang
- & Hyunwook Koh
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| Open AccessSingle-strand DNA-binding protein suppresses illegitimate recombination in Escherichia coli, acting in synergy with RecQ helicase
- Isidoro Feliciello
- , Sven Ljubić
- & Damir Đermić
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| Open AccessReconstructing SARS-CoV-2 lineages from mixed wastewater sequencing data
- Isaac Ellmen
- , Alyssa K. Overton
- & Trevor C. Charles
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| Open AccessFirst insight into the whole genome sequence variations in clarithromycin resistant Helicobacter pylori clinical isolates in Russia
- Daria Starkova
- , Nikita Gladyshev
- & Alena Svarval
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| Open AccessAnalysis of fine-scale phylogeny of Burkholderia pseudomallei in relation to regional geography and drug susceptibility in Thailand
- Yothin Hinwan
- , Pisit Chareonsudjai
- & Kiatichai Faksri
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| Open AccessCarbapenem-resistant Acinetobacter baumannii (CRAB): metabolic adaptation and transcriptional response to human urine (HU)
- Jenny Escalante
- , Mase Hamza
- & María Soledad Ramirez
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| Open AccessMksB is a novel mycobacterial condensin that orchestrates spatiotemporal positioning of replication machinery
- Hanna Bułacz
- , Joanna Hołówka
- & Jolanta Zakrzewska-Czerwińska
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Article
| Open AccessMetagenome-assembled microbial genomes from Parkinson’s disease fecal samples
- Ilhan Cem Duru
- , Alexandre Lecomte
- & Petri Auvinen
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| Open AccessA two sample mendelian randomization analysis investigates causal effects between gut microbiome and immune related Vasculitis
- Si Chen
- , Rui Nie
- & Hui Yuan
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Article
| Open AccessOral microbiota diversity in moderate to severe plaque psoriasis, nail psoriasis and psoriatic arthritis
- Wen Fan
- , Na Lei
- & Yan Lu
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| Open AccessPlasmodium falciparum population dynamics in East Africa and genomic surveillance along the Kenya-Uganda border
- Ashley Osborne
- , Emilia Mańko
- & Taane G. Clark
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| Open AccessSerratia marcescens ATCC 274 increases production of the red pigment prodigiosin in response to Chi phage infection
- Nathaniel C. Esteves
- & Birgit E. Scharf
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Article
| Open AccessMajority of Treponema pallidum ssp. pallidum MLST allelic profiles in the Czech Republic (2004–2022) belong to two SS14-like clusters
- Eliška Vrbová
- , Petra Pospíšilová
- & David Šmajs
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Article
| Open AccessGenomic surveillance and vaccine response to the dominant SARS-CoV-2 XBB lineage in Rio Grande do Sul
- Bruna Candia Piccoli
- , Thais Regina y Castro
- & Priscila Arruda Trindade
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| Open AccessGenomic analysis of carbapenem- and colistin-resistant Klebsiella pneumoniae complex harbouring mcr-8 and mcr-9 from individuals in Thailand
- Rujirat Hatrongjit
- , Thidathip Wongsurawat
- & Anusak Kerdsin
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| Open AccessInsights into the genomic and functional divergence of NAT gene family to serve microbial secondary metabolism
- Sotiria Boukouvala
- , Evanthia Kontomina
- & Sokratis Zekkas
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Article
| Open AccessIncreased biofilm formation in dual-strain compared to single-strain communities of Cutibacterium acnes
- Cecilie Scavenius Brønnum Bjerg
- , Anja Poehlein
- & Holger Brüggemann
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Article
| Open AccessVirulence and resistance profiling of Staphylococcus aureus isolated from subclinical bovine mastitis in the Pakistani Pothohar region
- Muhammad Armaghan Shahzad
- , Arfan Yousaf
- & Sundus Javed
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Article
| Open AccessComparative genomics of Giardia duodenalis sub-assemblage AI beaver (Be-2) and human (WB-C6) strains show remarkable homozygosity, sequence similarity, and conservation of VSP genes
- Rodrigo de Paula Baptista
- , Matthew S. Tucker
- & Asis Khan
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Article
| Open AccessSpecies prevalence, virulence genes, and antibiotic resistance of enterococci from food-producing animals at a slaughterhouse in Turkey
- Tugba Cebeci
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Article
| Open AccessExploration of mobile genetic elements in the ruminal microbiome of Nellore cattle
- Camila A. Faleiros
- , Alanne T. Nunes
- & Heidge Fukumasu
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Article
| Open AccessDysbiosis not observed in Canadian horses with free fecal liquid (FFL) using 16S rRNA sequencing
- Robert J. Wester
- , Lyndsey L. Baillie
- & Paul J. Adams
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Article
| Open AccessPopulation-based nanopore sequencing of the HIV-1 pangenome to identify drug resistance mutations
- Hirotaka Ode
- , Masakazu Matsuda
- & Yasumasa Iwatani
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Article
| Open AccessEvolutionary dynamics of canine kobuvirus in Vietnam and Thailand reveal the evidence of viral ability to evade host immunity
- Tin Van Nguyen
- , Tanit Kasantikul
- & Somporn Techangamsuwan
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Article
| Open AccessThe geographic distribution, and the biotic and abiotic predictors of select zoonotic pathogen detections in Canadian polar bears
- Christina M. Tschritter
- , Peter van Coeverden de Groot
- & Stephen C. Lougheed
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Article
| Open AccessMultidrug-resistant Escherichia coli causing canine pyometra and urinary tract infections are genetically related but distinct from those causing prostatic abscesses
- Parinya Sroithongkham
- , Naiyaphat Nittayasut
- & Pattrarat Chanchaithong
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Article
| Open AccessGenomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
- Núria Ferrer-Bustins
- , Claire Yvon
- & Anna Jofré
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| Open AccessGenomic properties of a Bartonella quintana strain from Japanese macaque (Macaca fuscata) revealed by genome comparison with human and rhesus macaque strains
- Shingo Sato
- , Emu Nishioka
- & Soichi Maruyama
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Article
| Open AccessCommunity dynamics and metagenomic analyses reveal Bacteroidota's role in widespread enzymatic Fucus vesiculosus cell wall degradation
- Jascha F. H. Macdonald
- , Pablo Pérez-García
- & Wolfgang R. Streit
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Article
| Open AccessGenotypic analyses of IncHI2 plasmids from enteric bacteria
- Suad Algarni
- , Dereje D. Gudeta
- & Steven L. Foley
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Article
| Open AccessBiodiversity of carbapenem-resistant bacteria in clinical samples from the Southwest Amazon region (Rondônia/Brazil)
- Levy Assis dos Santos
- , Rodrigo Cayô
- & Marcela Campanharo
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| Open AccessA role for the stringent response in ciprofloxacin resistance in Pseudomonas aeruginosa
- Libertad García-Villada
- , Natalya P. Degtyareva
- & Paul W. Doetsch
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Article
| Open AccessWolbachia supergroup A in Enoplognatha latimana (Araneae: Theridiidae) in Poland as an example of possible horizontal transfer of bacteria
- Edyta Konecka
- & Paweł Szymkowiak
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| Open AccessEnterobacter asburiae ST229: an emerging carbapenemases producer
- Vittoria Mattioni Marchetti
- , Angela Kuka
- & Fausto Baldanti
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Article
| Open AccessComprehensive study reveals phenotypic heterogeneity in Klebsiella pneumoniae species complex isolates
- Nadia Rodríguez-Medina
- , Jonathan Rodríguez-Santiago
- & Ulises Garza-Ramos
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| Open AccessRe-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing
- David R. Greig
- , Vivienne Do Nascimento
- & Claire Jenkins
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Article
| Open AccessIdentification of microbial pathogens in Neolithic Scandinavian humans
- Nora Bergfeldt
- , Emrah Kırdök
- & Anders Götherström
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| Open AccessHigh-throughput analysis of the Trypanosoma cruzi minicirculome (mcDNA) unveils structural variation and functional diversity
- Andrés Gómez-Palacio
- , Lissa Cruz-Saavedra
- & Juan David Ramírez
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| Open AccessOccurrence and mechanisms of tigecycline resistance in carbapenem- and colistin-resistant Klebsiella pneumoniae in Thailand
- Nachat Chirabhundhu
- , Sirirat Luk-In
- & Sakda Yainoy
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Article
| Open AccessComparative pangenomic analysis of Campylobacter fetus isolated from Spanish bulls and other mammalian species
- Nerea Pena-Fernández
- , Medelin Ocejo
- & Gorka Aduriz
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Article
| Open AccessChoice of DNA extraction method affects stool microbiome recovery and subsequent phenotypic association analyses
- Asier Fernández-Pato
- , Trishla Sinha
- & Alexander Kurilshikov
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| Open AccessSelection and validation of reference genes suitable for gene expression analysis by Reverse Transcription Quantitative real-time PCR in Acinetobacter baumannii
- Paloma Aparecida Alves de Oliveira
- , Juliana Baboghlian
- & Lúcio Fábio Caldas Ferraz
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| Open AccessHighly pathogenic avian influenza virus H5N1 clade 2.3.4.4b from Peru forms a monophyletic group with Chilean isolates in South America
- Gina R. Castro-Sanguinetti
- , Rosa González-Veliz
- & Juan A. More-Bayona
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Article
| Open AccessMendelian randomization study revealed a gut microbiota-neuromuscular junction axis in myasthenia gravis
- Jiaying Shi
- , Ming Yi
- & Yuan Yang
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Article
| Open AccessComparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly
- Tongyuan Hu
- , Jianwei Chen
- & Yuanqiang Zou
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Article
| Open AccessUnraveling the genome of Bacillus velezensis MEP218, a strain producing fengycin homologs with broad antibacterial activity: comprehensive comparative genome analysis
- Daniela Medeot
- , Analía Sannazzaro
- & Edgardo Jofré
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Article
| Open AccessRotavirus genotype diversity in Tanzania during Rotavirus vaccine implementation between 2013 and 2018
- Fausta Michael
- , Mariam M. Mirambo
- & Stephen E. Mshana
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Article
| Open AccessGenotyping and phylogenetic analysis of Coxiella burnetii in domestic ruminant and clinical samples in Iran: insights into Q fever epidemiology
- Ashraf Mohabati Mobarez
- , Neda Baseri
- & Saber Esmaeili
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| Open AccessInsight into the on/off switch that regulates expression of the MSMEG-3762/63 efflux pump in Mycobacterium smegmatis
- Nicoletta Campolattano
- , Gianluca D’Abrosca
- & Lidia Muscariello