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| Open AccessSystematic identification and expression profiles of the BAHD superfamily acyltransferases in barley (Hordeum vulgare)
- Zhen Yuan
- , Hongliang Yang
- & Dawei Xu
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| Open AccessGOntoSim: a semantic similarity measure based on LCA and common descendants
- Amna Binte Kamran
- & Hammad Naveed
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| Open AccessClustering and graph mining techniques for classification of complex structural variations in cancer genomes
- Gonzalo Gomez-Sanchez
- , Luisa Delgado-Serrano
- & Josep Ll. Berral
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| Open AccessA computational pipeline for functional gene discovery
- Aolani Colon
- , Rishabh Hirday
- & Li Cai
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| Open AccessDecomposition of cell activities revealing the role of the cell cycle in driving biofunctional heterogeneity
- Tian Lan
- , Meng Yu
- & Yiider Tseng
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| Open AccessA machine learning pipeline revealing heterogeneous responses to drug perturbations on vascular smooth muscle cell spheroid morphology and formation
- Kalyanaraman Vaidyanathan
- , Chuangqi Wang
- & Yongho Bae
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| Open Accessβ-elimination of hyaluronate by red king crab hyaluronidase
- Dmitrii Sliadovskii
- , Tatyana Ponomareva
- & Evgeny Sogorin
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| Open AccessPlantPathMarks (PPMdb): an interactive hub for pathways-based markers in plant genomes
- Morad M. Mokhtar
- , Achraf El Allali
- & Mohamed A. M. Atia
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| Open AccessClassifying diseases by using biological features to identify potential nosological models
- Lucía Prieto Santamaría
- , Eduardo P. García del Valle
- & Alejandro Rodríguez-González
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| Open AccessIntegrated computational analyses reveal novel insights into the stromal microenvironment of SHH-subtype medulloblastoma
- Alexander P. Landry
- , Nardin Samuel
- & Zsolt Zador
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| Open AccessValidation of eyes-closed resting alpha amplitude predicting neurofeedback learning of upregulation alpha activity
- Ken-Hsien Su
- , Jen-Jui Hsueh
- & Fu-Zen Shaw
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| Open AccessSingle-cell and bulk transcriptomics of the liver reveals potential targets of NASH with fibrosis
- Zhong-Yi Wang
- , Adrian Keogh
- & Florian Nigsch
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| Open AccessMolecular characteristics and spatial distribution of adult human corneal cell subtypes
- Ann J. Ligocki
- , Wen Fury
- & Carmelo Romano
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| Open Accesshsp-90 and unc-45 depletion induce characteristic transcriptional signatures in coexpression cliques of C. elegans
- Lukas Schmauder
- & Klaus Richter
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| Open AccessTranscriptome analysis of gravitational effects on mouse skeletal muscles under microgravity and artificial 1 g onboard environment
- Risa Okada
- , Shin-ichiro Fujita
- & Satoru Takahashi
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| Open AccessNew approach to determine the healthy immune variations by combining clustering methods
- Claire Liefferinckx
- , Zacharie De Grève
- & Denis Franchimont
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| Open AccessIntegrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome
- Robert Moore
- , Bhanwar Lal Puniya
- & Tomáš Helikar
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| Open AccessMolecular features similarities between SARS-CoV-2, SARS, MERS and key human genes could favour the viral infections and trigger collateral effects
- Lucas L. Maldonado
- , Andrea Mendoza Bertelli
- & Laura Kamenetzky
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| Open AccessHead-to-head comparison of clustering methods for heterogeneous data: a simulation-driven benchmark
- Gregoire Preud’homme
- , Kevin Duarte
- & Nicolas Girerd
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| Open AccessInvestigation of MicroRNA and transcription factor mediated regulatory network for silicosis using systems biology approach
- J. K. Choudhari
- , M. K. Verma
- & B. P. Sahariah
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| Open AccessMultiplex gene and phenotype network to characterize shared genetic pathways of epilepsy and autism
- Jacqueline Peng
- , Yunyun Zhou
- & Kai Wang
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| Open AccessCombinatorial analyses reveal cellular composition changes have different impacts on transcriptomic changes of cell type specific genes in Alzheimer’s Disease
- Travis S. Johnson
- , Shunian Xiang
- & Jie Zhang
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| Open AccessAn enriched biosignature of gut microbiota-dependent metabolites characterizes maternal plasma in a mouse model of fetal alcohol spectrum disorder
- Manjot S. Virdee
- , Nipun Saini
- & Susan M. Smith
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| Open AccessDistinct regional ontogeny and activation of tumor associated macrophages in human glioblastoma
- Alexander P. Landry
- , Michael Balas
- & Zsolt Zador
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| Open AccessA methodology for predicting tissue-specific metabolic roles of receptors applied to subcutaneous adipose
- Judith Somekh
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| Open AccessDifferences in maternal gene expression in Cesarean section delivery compared with vaginal delivery
- Prachi Kothiyal
- , Keriann Schulkers
- & Suchitra K. Hourigan
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| Open AccessNorthstar enables automatic classification of known and novel cell types from tumor samples
- Fabio Zanini
- , Bojk A. Berghuis
- & Stephen R. Quake
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| Open AccessEnhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM
- Marcus Alvarez
- , Elior Rahmani
- & Päivi Pajukanta
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| Open AccessGenome-Scale Characterization of Predicted Plastid-Targeted Proteomes in Higher Plants
- Ryan W. Christian
- , Seanna L. Hewitt
- & Amit Dhingra
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| Open AccessMetaGeneHunt for protein domain annotation in short-read metagenomes
- R. Berlemont
- , N. Winans
- & H-W. Tsai
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| Open AccessIdentification of potential microRNA panels for pancreatic cancer diagnosis using microarray datasets and bioinformatics methods
- Roshanak Shams
- , Samaneh Saberi
- & Hamid Asadzadeh Aghdaei
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| Open AccessMolecular classification of breast cancer using the mRNA expression profiles of immune-related genes
- Juan Mei
- , Ji Zhao
- & Yi Fu
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| Open AccessAn atlas of evidence-based phenotypic associations across the mouse phenome
- Nobuhiko Tanaka
- & Hiroshi Masuya
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| Open AccessComparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis
- Manisha Aswal
- , Anjali Garg
- & Manish Kumar
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| Open AccessTranscriptome analysis of polysaccharide-based microbial flocculant MBFA9 biosynthesis regulated by nitrogen source
- Lili Fu
- , Binhui Jiang
- & Li Zhang
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| Open AccessDistribution Optimization: An evolutionary algorithm to separate Gaussian mixtures
- Florian Lerch
- , Alfred Ultsch
- & Jörn Lötsch
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| Open AccessUnsupervised class discovery in pancreatic ductal adenocarcinoma reveals cell-intrinsic mesenchymal features and high concordance between existing classification systems
- Frederike Dijk
- , Veronique L. Veenstra
- & Maarten F. Bijlsma
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| Open AccessDomain-mediated interactions for protein subfamily identification
- Heetak Lee
- , Inhae Kim
- & Sanguk Kim
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| Open AccessSingle-cell transcriptional profiles in human skeletal muscle
- Aliza B. Rubenstein
- , Gregory R. Smith
- & Stuart C. Sealfon
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| Open AccessUsing transfer learning from prior reference knowledge to improve the clustering of single-cell RNA-Seq data
- Bettina Mieth
- , James R. F. Hockley
- & Daniel Ziemek
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| Open AccessPatterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype
- Matej Mihelčić
- , Tomislav Šmuc
- & Fran Supek
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| Open AccessBlood transcriptome analysis in a buck-ewe hybrid and its parents
- Clemens Falker-Gieske
- , Christoph Knorr
- & Jens Tetens
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| Open AccessMonocytes affect bone mineral density in pre- and postmenopausal women through ribonucleoprotein complex biogenesis by integrative bioinformatics analysis
- Xiao Kang-Wen
- , Li Jia-Li
- & Lin Cai
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| Open AccessDifferential Treatments Based on Drug-induced Gene Expression Signatures and Longitudinal Systemic Lupus Erythematosus Stratification
- Daniel Toro-Domínguez
- , Raúl Lopez-Domínguez
- & Marta E. Alarcón-Riquelme
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| Open AccessMulti-tissue network analysis for drug prioritization in knee osteoarthritis
- Michael Neidlin
- , Smaragda Dimitrakopoulou
- & Leonidas G. Alexopoulos
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| Open AccessCharacterization of biological variation of peripheral blood immune cytome in an Indian cohort
- Parna Kanodia
- , Gurvinder Kaur
- & Savit B. Prabhu
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| Open AccessGlobal gene expression analysis of Escherichia coli K-12 DH5α after exposure to 2.4 GHz wireless fidelity radiation
- Ilham H. Said-Salman
- , Fatima A. Jebaii
- & Mohamed E. Moustafa
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| Open AccessThe Functional 3D Organization of Unicellular Genomes
- Shay Ben-Elazar
- , Benny Chor
- & Zohar Yakhini
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| Open AccessA Network of SLC and ABC Transporter and DME Genes Involved in Remote Sensing and Signaling in the Gut-Liver-Kidney Axis
- Sara Brin Rosenthal
- , Kevin T. Bush
- & Sanjay K. Nigam