Evolution articles within Nature Communications

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  • Article |

    Troodontid dinosaurs share a close ancestry with birds and were distributed widely across the northern hemisphere before the extinction of non-avian dinosaurs. Goswami et al. report the discovery in South India of the first Gondwanan troodontid, extending their geographic range by nearly 10,000 km.

    • A. Goswami
    • , G. V. R. Prasad
    •  & R. B. J. Benson

  • Article |

    Robustness to mutations can give rise to cryptic variation —a bottled-up genetic potential, which is of undetermined importance in developmental processes. Kienle and Sommer show the occurrence of cryptic variation in nematode vulva development and identify cis-regulatory evolution of the transcription factor’s HAIRY-binding site as mechanism.

    • Simone Kienle
    •  & Ralf J. Sommer

  • Article |

    Inhibition of return describes a mechanism in humans and monkeys whereby the visual detection of recently attended objects or locations is impaired. Gabay et al.find that inhibition of return is also present in archer fish, meaning that a fully developed cortex is not needed for this mechanism.

    • Shai Gabay
    • , Tali Leibovich
    •  & Ronen Segev

  • Article
    | Open Access

    Trunk exoskeleton elements of non-tetrapods such as scales and fin rays are believed to derive from the neural crest. Shimada and colleagues use long-term cell labelling methods to show that these elements are actually derived from the mesoderm.

    • Atsuko Shimada
    • , Toru Kawanishi
    •  & Hiroyuki Takeda

  • Article |

    Biologists have struggled to explain the existence of sex-role reversal since Darwin first formulated his theory of evolution. Liker et al.show for the first time that sex roles are predicted by adult sex ratio in wild populations of birds: sex-role reversal emerges at male-biased adult sex ratios.

    • András Liker
    • , Robert P. Freckleton
    •  & Tamás Székely

  • Article |

    The origins of the enigmatic extinct Falkland Islands wolf have remained a mystery since first records in the seventeenth century. Ancient DNA data and evidence from submarine terraces reveal that the species colonized the islands during the Last Glacial Maximum via a shallow, potentially frozen, marine strait.

    • Jeremy J. Austin
    • , Julien Soubrier
    •  & Alan Cooper

  • Article
    | Open Access

    Camels originated in North America during the Eocene period ~45 million years ago. This study reports evidence of a High Arctic camel from Ellesmere Island, which extends the range of North American camels northward by ~1,200 km to a lineage of giant camels that were well established in a forested Arctic.

    • Natalia Rybczynski
    • , John C. Gosse
    •  & Mike Buckley

  • Article
    | Open Access

    Xenoturbella is a simple marine worm recently suggested to be either a deuterostome or an early branching bilaterian. Nakano et al. report the first observations of naturally spawned eggs and embryos from Xenoturbella, and uncover new insights into the evolutionary history of metazoan development.

    • Hiroaki Nakano
    • , Kennet Lundin
    •  & Michael C. Thorndyke

  • Article |

    It has been thought that the evolution of mammals similar to modern grass-eating horses in South America ∼38 million years ago was a response to the spread of grasslands. This study uses microscopic plant silica fossils from southern Argentina to show that these presumed grass-eating mammals evolved in forests, not grasslands.

    • Caroline A.E. Strömberg
    • , Regan E. Dunn
    •  & Alfredo A. Carlini

  • Article |

    It is generally believed that jaws evolved from a gill arch, but this is unsupported by palaeontological or developmental data. Gillis et al. study three gnathostome taxa and identify a conserved molecular mechanism that delineates the dorsal and ventral skeletal segments of the jaw, hyoid and gill arches.

    • J. Andrew Gillis
    • , Melinda S. Modrell
    •  & Clare V. H. Baker

  • Article
    | Open Access

    The Chinese tree shrew, Tupaia belangeri chinensis, has been proposed as a potential animal model in biomedical research and drug safety testing. This study presents the full genome of the Chinese tree shrew, identifying common features between the tree shrew and primates.

    • Yu Fan
    • , Zhi-Yong Huang
    •  & Yong-Gang Yao

  • Article |

    Trichoplaxis the most primitive multicellular animal on Earth and thus provides insight into the earliest stages of evolution. Delving deep into the proteome, Heck and colleagues observe a burst in tyrosine phosphorylation, confirming the hypothesis that at the onset of this new communication system a surplus of phosphorylation took place.

    • Jeffrey H. Ringrose
    • , Henk W.P. van den Toorn
    •  & Albert J.R. Heck

  • Article |

    Feathered dinosaurs from the Middle-Late Jurassic of north-eastern China have recently been described. Here, a new paravian dinosaur, characterized by less extensive feathers on its limbs and tail, shows that the plumage of theropods was already diversified and adapted to different ecological niches by the Late Jurassic.

    • Pascal Godefroit
    • , Helena Demuynck
    •  & Philippe Claeys

  • Article |

    Specimens of the Early Cretaceous bird C. sanctuswith ornamental tail feathers are commonly interpreted as male, and those without as female. In this study, in support of this theory, medullary bone—a tissue unique to reproductively active female birds—is found in a specimen without ornamental feathers.

    • Anusuya Chinsamy
    • , Luis M. Chiappe
    •  & Zhang Fengjiao

  • Article
    | Open Access

    Plant pathogens encode effector proteins that trigger immunity in plants carrying appropriate resistance genes. Here Qutob et al. show non-Mendelian interactions between naturally occurring Phytophthora sojaealleles that result in transgenerational gene silencing and gain of virulence in soybean plants.

    • Dinah Qutob
    • , B. Patrick Chapman
    •  & Mark Gijzen

  • Article |

    The rise of open-habitat ecosystems in southern South America is thought to have occurred with the spread of hypsodont mammals 26 million years ago. In this study, the fossil record of plants preserved in Patagonia suggests that open-habitat ecosystems emerged 15 million years later than previously assumed.

    • Luis Palazzesi
    •  & Viviana Barreda

  • Article |

    In Müllerian mimicry two or more harmful species share a similar appearance for mutual benefit. This study identifies a large Müllerian mimicry complex in North American velvet ants, where 65 species mimic each other through shared colour patterns gained as the result of independent evolution.

    • Joseph S. Wilson
    • , Kevin A. Williams
    •  & James P. Pitts

  • Article |

    The mammalian transcription factors Oct4 and Pou2 are implicated in germ cell pluripotency induction and maintenance. Tapia and colleagues find that axolotl Pou2 and Oct4 reprogram mouse and human fibroblasts to a pluripotent state, suggesting ancestral Oct4 and Pou2 gene function is evolutionarily conserved.

    • Natalia Tapia
    • , Peter Reinhardt
    •  & Hans R. Schöler

  • Article |

    Enzymes are traditionally viewed as being highly specific for their substrates. Tokuriki et al.follow the accumulation of mutations during the laboratory evolution of a phosphotriesterase into an arylesterase, and postulate that many naturally occurring enzymes may not be optimal for their substrates.

    • Nobuhiko Tokuriki
    • , Colin J. Jackson
    •  & Dan S. Tawfik

  • Article
    | Open Access

    Camels are essential means of transport in deserts, but we know little about the biology of these extraordinary mammals. This study reports the genome sequences of the wild and domestic bactrian camel, offering a glimpse into the camels’ genetic adaptation to harsh environments.

    • Jirimutu
    • , Zhen Wang
    •  & He Meng

  • Article |

    Our understanding of the evolutionary sequence of tetrapod characters is hindered by a limited fossil record of primitive finned tetrapods. This study reports a new stem-tetrapod from ~409 million years ago, which displays morphological features shared by tetrapods and lungfishes, and extends the earliest record of tetrapods by ~10 million years.

    • Jing Lu
    • , Min Zhu
    •  & Tuo Qiao

  • Article
    | Open Access

    miRNAs simultaneously regulate a range of genes, making them potential master players in evolution. Huet al.identify a human-specific miRNA called miR-941, whose copy number remains polymorphic in modern humans, and show that miR-941 is expressed in the brain and could regulate important signalling pathways.

    • Hai Yang Hu
    • , Liu He
    •  & Philipp Khaitovich

  • Article
    | Open Access

    Hunter-gatherer populations in Africa preserve unique information about human history, but genetic sub-structures of these populations remain unclear. Using newly designed microarray and statistical methods, these authors analyse genetic compositions of southern African populations and reveal an ancient link between southern and eastern Africa.

    • Joseph K. Pickrell
    • , Nick Patterson
    •  & Brigitte Pakendorf

  • Article |

    It has been proposed that phylogenetic diversity can be used as a proxy to estimate functional diversity and to predict ecosystem functioning. Here, the rapid evolutionary response of marine bacteria is used to study the positive effects of evolutionary history and species diversity on ecosystem productivity.

    • Dominique Gravel
    • , Thomas Bell
    •  & Nicolas Mouquet

  • Article |

    The keeled sternum is a distinct skeletal element in extant birds. In this study, specimens of juvenile extinct birds—Enantiornithes—from the Early Cretaceous show a unique sequence of development in the sternum, suggesting differences between living birds and this extinct clade.

    • Xiaoting Zheng
    • , Xiaoli Wang
    •  & Zhonghe Zhou

  • Article |

    The evolution of venom toxins is an area of intense study but has been hampered by the lack of non-toxin protein homologues. Here, phylogenetic analyses of non-toxin genes sourced from transcriptomic studies are found placed within groups of venom toxins, revealing dynamic changes in the sites of toxin expression.

    • Nicholas R. Casewell
    • , Gavin A. Huttley
    •  & Wolfgang Wüster

  • Article
    | Open Access

    Mutation, selection and random drift determine evolutionary dynamics and can give rise to polymorphisms. Here, an evolutionary game model, in which each new mutation generates a new evolutionary game, is applied to study the emergence of polymorphism, resulting in higher diversity than seen in previous models.

    • Weini Huang
    • , Bernhard Haubold
    •  & Arne Traulsen

  • Article |

    Ecological factors impact cooperative and competitive behaviour, creating social conflict. Here, predictions from a game-theory model together with observations of Taiwan yuhinas—a joint-nesting species where group members are unrelated—show that these birds are more cooperative in unfavourable environmental conditions.

    • Sheng-Feng Shen
    • , Sandra L. Vehrencamp
    •  & Hsiao-Wei Yuan

  • Article |

    Putative fossil melanosomes have been reported but, because their shape and size correspond well with those of bacteria, further evidence is required to confirm their identity. This study reports evidence of melanin in association with melanosome-like microbodies in an argentinoid fish eye from the early Eocene.

    • Johan Lindgren
    • , Per Uvdal
    •  & Volker Thiel

  • Article |

    Dinosaurs became extinct 65 million years ago due to volcanism and a bolide impact, but whether their numbers were already declining is still not clear. This study calculates the morphological disparity of seven dinosaur subgroups, showing that at least some groups were in a long-term decline before the extinction.

    • Stephen L. Brusatte
    • , Richard J. Butler
    •  & Mark A. Norell

  • Article
    | Open Access

    The large virus family,Paramyxoviridae, includes several human and livestock viruses. This study, testing 119 bat and rodent species distributed globally, identifies novel putative paramyxovirus species, providing data with potential uses in predictions of the emergence of novel paramyxoviruses in humans and livestock.

    • Jan Felix Drexler
    • , Victor Max Corman
    •  & Christian Drosten

  • Article
    | Open Access

    GALgenes enhance their own transcription via the transcription factor Gal4p, and the number of Galp4 sites in a promoter is expected to strengthen the feedback. In this study, Hsuet al. show that instead the feedback loops are activated by genes that have frequent bursts of expression and fast RNA decay kinetics.

    • Chieh Hsu
    • , Simone Scherrer
    •  & Attila Becskei

  • Article |

    Empirical data suggest that species abundance distributions can have multiple modes, which is not predicted by existing theories. This study shows that the multimodal pattern is consistent with emergent neutrality, suggesting this theory could have a role in shaping natural communities.

    • Remi Vergnon
    • , Egbert H. van Nes
    •  & Marten Scheffer

  • Article
    | Open Access

    The loss of flight in some insect lineages may promote allopatric differentiation and result in a high speciation rate. Here, using the carrion beetle, loss of flight is shown to accelerate allopatric speciation with higher genetic differentiation than for flight-capable species.

    • Hiroshi Ikeda
    • , Masaaki Nishikawa
    •  & Teiji Sota

  • Article |

    Archaeopteryxcombined features of reptiles and birds, but the colour of its feathers has remained unclear. In this study, based on data from fossilized colour-imparting melanosomes, an isolated feather specimen fromArchaeopteryxis predicted to be black, providing clues to its plumage colour and function.

    • Ryan M. Carney
    • , Jakob Vinther
    •  & Jörg Ackermann

  • Article |

    A genetic variation in the horsemyostatingene is found at a very high frequency in the best Thoroughbred sprinters. This study shows, using molecular and pedigree data from modern and historic horses, that a single introduction of the variant occurred at the foundation stages of the Thoroughbred from a British native mare.

    • Mim A. Bower
    • , Beatrice A. McGivney
    •  & Emmeline W. Hill

  • Article
    | Open Access

    In vertebrates parasite-mediated selection is thought to maintain polymorphism in MHC genes where specific resistance MHC alleles increase under emerging selection. Here, experimental evidence is shown from six stickleback fish populations that varying parasite selection helps maintain MHC polymorphism.

    • Christophe Eizaguirre
    • , Tobias L. Lenz
    •  & Manfred Milinski

  • Article |

    The habitat where early humans, hominins, lived provides information about the early part of human evolution. In this study, sedimentological and stable carbon and oxygen isotope data suggest homininArdipithecus ramiduslived in a river-margin forest in a wooded grassland landscape at Aramis, Ethiopia.

    • M. Royhan Gani
    •  & Nahid D. Gani

  • Article |

    Encephalization—increase of brain size relative to body size—has occurred in two distinct evolutionary lineages; Neanderthals and modern humans. However, the 3D endocranial surface shape analysis reported here reveals unique structures at the base of the brain inHomo sapiens, which may have contributed to learning and social capacities.

    • Markus Bastir
    • , Antonio Rosas
    •  & Jean-Jacques Hublin

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