Biological sciences articles within Nature Communications

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  • Article |

    Archaeopteryxcombined features of reptiles and birds, but the colour of its feathers has remained unclear. In this study, based on data from fossilized colour-imparting melanosomes, an isolated feather specimen fromArchaeopteryxis predicted to be black, providing clues to its plumage colour and function.

    • Ryan M. Carney
    • , Jakob Vinther
    •  & Jörg Ackermann

  • Article |

    A genetic variation in the horsemyostatingene is found at a very high frequency in the best Thoroughbred sprinters. This study shows, using molecular and pedigree data from modern and historic horses, that a single introduction of the variant occurred at the foundation stages of the Thoroughbred from a British native mare.

    • Mim A. Bower
    • , Beatrice A. McGivney
    •  & Emmeline W. Hill

  • Article
    | Open Access

    The super elongation complex, which is involved in transcriptional elongation, contains the Eleven-nineteen Lysine-rich Leukemia protein (ELL). In this study, ELL is shown to stabilize RNA polymerase II prior to recruitment into the super elongation complex, suggesting ELL has a role in early transcription elongation.

    • Jung S. Byun
    • , Temesgen D. Fufa
    •  & Kevin Gardner

  • Article
    | Open Access

    A systematic approach for identifying the genes responsible for the regulation of spindle orientation in mammals has been lacking. Now, Matsumuraet al. perform a kinase-targeting RNAi screen and identify ABL1, which through the direct phosphorylation of NuMa, is a novel regulator of spindle orientation.

    • Shigeru Matsumura
    • , Mayumi Hamasaki
    •  & Fumiko Toyoshima

  • Article |

    Osteoblast maturation is regulated by c-Src and IL-6, but how these signalling pathways are integrated is not known. Here c-Src is shown to induce 1GFBP5 in immature osteoblasts in a STAT3 and IL-6-dependent manner, in mature osteoblasts, which express lower levels of c-Src, this signalling is lost.

    • Barbara Peruzzi
    • , Alfredo Cappariello
    •  & Anna Teti

  • Article
    | Open Access

    In vertebrates parasite-mediated selection is thought to maintain polymorphism in MHC genes where specific resistance MHC alleles increase under emerging selection. Here, experimental evidence is shown from six stickleback fish populations that varying parasite selection helps maintain MHC polymorphism.

    • Christophe Eizaguirre
    • , Tobias L. Lenz
    •  & Manfred Milinski

  • Article |

    Inward rectifier potassium channels are regulated by a range of ligands that act on a common gate, but the structural details of gating are unclear. Here, the molecular motions associated with gating of KirBac1.1 channels are assessed using small molecule fluorescent probes attached to introduced cysteines.

    • Shizhen Wang
    • , Sun-Joo Lee
    •  & Colin G. Nichols

  • Article |

    Multivalent display of integrin antagonists enhances their efficacy, but current synthetic scaffolds used to display ligands are limited in range and precision. Englundet al. develop a new scaffold to study the multivalent effects of integrin antagonists across wide ranges of ligand number, density, and 3D arrangement.

    • Ethan A. Englund
    • , Deyun Wang
    •  & Daniel H. Appella

  • Article |

    Hereditary haemorrhagic telangiectasia (HTT) is caused by mutations in TGFβ/bone morphogenetic protein signalling genes. Here, Benzinouet al. show that variants of PTPN14, a gene within a mouse Tgfb1 modifier locus, associate with pulmonary arteriovenous malformation in HTT patients, shedding light on the molecular aetiology of this disease.

    • Michael Benzinou
    • , Frederic F. Clermont
    •  & Rosemary J. Akhurst

  • Article |

    A dual-contrast agent has been developed for combined ultrasound and photoacoustic imaging. This agent uses vaporization for ultrasound contrast enhancement and photoacoustic signal generation, providing significantly higher signals than thermal expansion, the most commonly used photoacoustic mechanism.

    • Katheryne Wilson
    • , Kimberly Homan
    •  & Stanislav Emelianov

  • Article
    | Open Access

    Albumin transport proteins circulate in the blood and are protected from degradation by interaction with the neonatal Fc receptor. Andersenet al. investigate the albumin binding site of the neonatal Fc receptor and find pH sensitive ionic networks at the binding interface.

    • Jan Terje Andersen
    • , Bjørn Dalhus
    •  & Inger Sandlie

  • Article
    | Open Access

    Experience-dependent plasticity and functional adaptation are thought to be restricted to the central nervous and immune systems. This study shows that long-lasting experience-dependent plasticity is a key feature of endocrine cell networks, allowing improved tissue function and hormone output following repeat demand.

    • David J. Hodson
    • , Marie Schaeffer
    •  & Patrice Mollard

  • Article |

    RNA can be silenced in a sequence-specific manner but whether proteins can silence RNA in this way is unknown. Now, Yamaguchi and colleagues show that an enzyme isolated fromHaloquadra walsbyi cleaves 7-base-pair sequences in Escherichia coli, and this high sequence specificity permits the silencing of targeted genes.

    • Yoshihiro Yamaguchi
    • , Hirofumi Nariya
    •  & Masayori Inouye

  • Article
    | Open Access

    The tumour suppressor BRCA1 is mutated in familial breast and ovarian cancer. Now, Shuklaet al.demonstrate that mice lacking BRCA1 in cardiomyocytes are more sensitive to ischaemia than control mice, and that BRCA1 is elevated in human tissues exposed to ischaemia, suggesting a cardioprotective role for BRCA1.

    • Praphulla C. Shukla
    • , Krishna K. Singh
    •  & Subodh Verma

  • Article |

    Food availability elicits behavioural and developmental responses. Adamset al. show that, in sea urchin larvae, food availability mediates developmental plasticity by regulating changes in arm length through dopamine signalling, a pathway widely used to mediate food-induced behavioural responses.

    • Diane K. Adams
    • , Mary A. Sewell
    •  & Lynne M. Angerer

  • Article
    | Open Access

    G-protein-coupled receptors sense extracellular cues and transmit the signal to distinct trimeric G-proteins. Stefanet al.show that in response to cAMP, a central and conserved component of the Gαs-coupled receptor cascade, the RII subunit of PKA, specifically binds to and participates in Gαi signaling.

    • Eduard Stefan
    • , Mohan K. Malleshaiah
    •  & Stephen W. Michnick

  • Article |

    The habitat where early humans, hominins, lived provides information about the early part of human evolution. In this study, sedimentological and stable carbon and oxygen isotope data suggest homininArdipithecus ramiduslived in a river-margin forest in a wooded grassland landscape at Aramis, Ethiopia.

    • M. Royhan Gani
    •  & Nahid D. Gani

  • Article
    | Open Access

    Membrane repair of myocytes is important to prevent such disease as muscular dystrophy but the properties of this repair are not well characterised. In this study, vitamin E is shown to be important in the repair of myocyte cell membranes in cultured cells and in intact muscle.

    • Amber C. Howard
    • , Anna K. McNeil
    •  & Paul L. McNeil

  • Article |

    The modification of proteins with O-linked-N-acetylglucosamine causes regulation of multiple cellular processes. In this study, Sakaidani and colleagues identify an endoplasmic reticulum O-linked-N-acetylglucosamine transferase in Drosophilathat regulates the adhesion of epithelial cells to the extracellular matrix.

    • Yuta Sakaidani
    • , Tomoko Nomura
    •  & Tetsuya Okajima

  • Article |

    Genome-scale metabolic models for bacterial species allow a systematic study of inter-species interactions. Here, competitive and cooperative potential is predicted between 6,903 pairs of species, to explore the role of these interactions in shaping coexistence patterns in natural communities.

    • Shiri Freilich
    • , Raphy Zarecki
    •  & Eytan Ruppin

  • Article |

    Encephalization—increase of brain size relative to body size—has occurred in two distinct evolutionary lineages; Neanderthals and modern humans. However, the 3D endocranial surface shape analysis reported here reveals unique structures at the base of the brain inHomo sapiens, which may have contributed to learning and social capacities.

    • Markus Bastir
    • , Antonio Rosas
    •  & Jean-Jacques Hublin

  • Article |

    Herpesvirus glycoprotein D binds to nectin 1 and the herpes virus entry mediator protein on the surface of host cells. In this study, Zhanget al. report the crystal structure of glycoprotein D in complex with the immunoglobulin-like domains of nectin 1, which suggests that binding of glycoprotein D to nectin 1 prevents nectin 1 dimerization.

    • Na Zhang
    • , Jinghua Yan
    •  & George F Gao

  • Article
    | Open Access

    Populations of the same species living in different habitats can differ in sensory traits driving speciation, but it is not known if this variation limits gene flow. Here, a genetic and acoustic study of the bumblebee bat suggests that geographic distance, instead of echolocation divergence, limits gene flow.

    • Sébastien J. Puechmaille
    • , Meriadeg Ar Gouilh
    •  & Emma C. Teeling

  • Article |

    Nanomechanical resonators are attractive as ultra-low concentration sensors of biomolecules, as their small scale allows for sensitive mass detection. Here, using a nanowire array as part of a photonic crystal, such a device is presented for light trapping, absorption and low-concentration sensing.

    • Yuerui Lu
    • , Songming Peng
    •  & Amit Lal

  • Article
    | Open Access

    Reinforcement learning quantifies the change in behaviour in response to past experience. Using field goal attempt data from basketball, Neiman and Loewenstein demonstrate that even one failed or made attempt has an impact on subsequent attempts, showing that players overgeneralize from their most recent actions.

    • Tal Neiman
    •  & Yonatan Loewenstein

  • Article |

    Human children use referential gestures such as showing, offering and pointing, which are thought to form the foundation of language skills. Here, evidence is provided of ravens (Corvus corax) using showing and offering to direct other's attention, as an example of referential gesturing in a non-primate lineage.

    • Simone Pika
    •  & Thomas Bugnyar

  • Article
    | Open Access

    New approaches are required to combatPlasmodium falciparuminfection. In this proteome-wide study, 1305 phosphorylation sites are identified and 36 kinases are shown to have crucial roles in parasite survival, providing new insights into parasite biology and potential new drug targets for anti-malarial chemotherapy.

    • Lev Solyakov
    • , Jean Halbert
    •  & Christian Doerig

  • Article
    | Open Access

    When two spatially separated parties flip a coin, it is impossible to choose between two alternatives in an unbiased manner. This study presents a quantum coin-flipping protocol that overcomes this problem and ensures a dishonest party cannot bias the outcome completely.

    • Guido Berlín
    • , Gilles Brassard
    •  & Wolfgang Tittel

  • Article |

    The 30S ribosomal subunit ofEscherichia coliinhibits the RNA-degrading enzyme Ribonuclease T2. Using mutational studies and hybrid ribosomes, Kitahara and Miyazaki show that helix 41 of the 30S ribosomal subunit blocks the enzyme activity, suggesting that helix 41 is required for preventing RNase T2 toxicity.

    • Kei Kitahara
    •  & Kentaro Miyazaki

  • Article
    | Open Access

    Most excitatory synapses in the brain are found on dendritic spines, but the mechanisms underlying synapse formation are poorly understood. Niesmannet al. investigate the role of neurobeachin in synaptogenesis, and find that its deletion leads to fewer spinous synapses and altered postsynaptic currents.

    • Katharina Niesmann
    • , Dorothee Breuer
    •  & Markus Missler

  • Article
    | Open Access

    Plant male reproduction is controlled by gibberellin signalling via the transcription factor GAMYB. Here, deletion of GAMYB in a moss species lacking a gibberellin signalling pathway gives rise to abnormal spores, suggesting that primitive plants used GAMYB for the control of sexual organ development.

    • Koichiro Aya
    • , Yuji Hiwatashi
    •  & Makoto Matsuoka

  • Article |

    Cell fusion is involved in many different cellular processes including the fusion of trophoblast cells in the placenta. Matsuuraet al. identify a role for the β-catenin signalling pathway in the regulation of the transcription factor GCM1 and therefore the fusion of syncytiotrophoblast cells.

    • Ken Matsuura
    • , Takafumi Jigami
    •  & Tetsu Akiyama

  • Article |

    The processes that regulate melanoblast migration during development are also thought to be involved in melanoma metastasis. Here, Prex1 null mice are shown to have a melanoblast migration defect and, when crossed to a mouse model of melanoma, are resistant to metastasis, suggesting a role for Prex1 in metastatic melanoma.

    • Colin R. Lindsay
    • , Samuel Lawn
    •  & Owen J. Sansom

  • Article |

    The health benefits of massage therapy, like the reduction of stress, have so far only been shown in humans. This study uses modelling to demonstrate that, while visiting cleaner fish to have ectoparasites removed, the physical stimulation also acts to reduce stress in the coral reef fish,Ctenochaetus striatus.

    • Marta C. Soares
    • , Rui F. Oliveira
    •  & Redouan Bshary

  • Article
    | Open Access

    Female Swallowtail butterflies will only lay their eggs on a small number of plants, which they choose by detecting specific chemicals on the leaf surface. Here, a gustatory receptor,PxutGr1, is identified in Papilio xuthus, which is used by the butterfly to detect synephrine when selecting a host plant.

    • Katsuhisa Ozaki
    • , Masasuke Ryuda
    •  & Hiroshi Yoshikawa

  • Article |

    DNA nanotubes could be used to transport nano-cargo and incorporated into nano-devices. In this study, rolling circle amplification is used to generate DNA subunits, and their thermodynamic growth results in the formation of nanotubes with a controlled diameter.

    • Ofer I. Wilner
    • , Ron Orbach
    •  & Itamar Willner

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