Abstract
Coenzyme A is an essential metabolite known for its central role in over one hundred cellular metabolic reactions. In cells, Coenzyme A is synthesized de novo in five enzymatic steps with vitamin B5 as the starting metabolite, phosphorylated by pantothenate kinase. Mutations in the pantothenate kinase 2 gene cause a severe form of neurodegeneration for which no treatment is available. One therapeutic strategy is to generate Coenzyme A precursors downstream of the defective step in the pathway. Here we describe the synthesis, characteristics and in vivo rescue potential of the acetyl-Coenzyme A precursor S-acetyl-4′-phosphopantetheine as a possible treatment for neurodegeneration associated with pantothenate kinase deficiency.
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Introduction
Coenzyme A (CoA), an essential metabolic cofactor known for over 70 years, is able to carry and transfer acetyl and other acyl groups to other molecules1. CoA is involved in energy and fatty acid metabolism2, 3, and levels of CoA and acetyl-CoA influence numerous biological processes including cell growth, cell death, signal transduction, epigenetics, protein acetylation and more (for reviews see4,5,6. One pathway for cells and organisms to synthesize CoA requires the uptake of vitamin B5, alternatively known as pantothenate (Pan), which is converted by a series of enzymatic reactions into CoA (Fig. 1). The five enzymes that carry out these reactions are pantothenate kinase (PANK), 4′-phosphopantothenoylcysteine synthetase (PPCS), 4′-phosphopantethenoylcysteine decarboxylase (PPCDC), phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA kinase (DPCK)2. This highly conserved pathway, referred to as the canonical de novo CoA biosynthesis pathway (Fig. 1), is present in nearly all organisms2, 7,8,9,10,11,12. It should be noted that humans and mice have 4 genes (PANK1–4) encoding PANK enzymes and only PANK1–3 encode proteins with functional pantothenate kinase activities (reviewed in ref. 2). In addition, the two final synthesis steps requiring PPAT and DPCK activity in humans, mice and Drosophila melanogaster are catalyzed by a bifunctional CoA synthase enzyme that is referred to as COASY8, 9, 13,14,15. Two hereditary diseases have been linked to inborn errors of CoA metabolism14, 16, further underscoring the essential role of CoA in living organisms. Patients that carry mutations in PANK2 or COASY suffer from progressive movement disorders, characterized by severe dystonia and iron accumulation in the basal ganglia17. The disorders are referred to as Pantothenate Kinase-Associated Neurodegeneration (PKAN) and COASY Protein-Associated Neurodegeneration (CoPAN). Mutations in PANK2 and COASY are associated with similar symptoms arising from damage to a common brain region. This observation bolsters the evidence of impaired CoA homeostasis in the pathophysiology of both diseases. There are currently no treatments available for either PKAN or CoPAN; however, concerted efforts are being made to develop rational therapeutics that bypass the biochemical defects.
Towards that end, a Drosophila melanogaster model for PKAN that recapitulates important phenotypic features of neurodegeneration has been used to develop candidate treatments. Recently it was demonstrated that the CoA precursor pantethine (PantSSPant, the disulfide form of pantetheine (PantSH)) can replenish decreased levels of CoA under conditions of impaired function of PANK enzymatic activity in a multicellular organism. Importantly, the addition of Pan did not alleviate any CoA defects in this study18. After this initial study it was also demonstrated that PantSSPant addition to the food of PANK2 −/− knockout mice rescued various phenotypes induced by a high fat diet19. Consistent with the results in Drosophila, PantSSPant but not Pan was also protective in a zebrafish model for PKAN20. The exact rescue mechanism by PantSSPant in a PANK compromised background is not known. One explanation is that PantSSPant is converted into PantSH and because of the promiscuous activity of PANK, this enzyme can also phosphorylate PantSH to form 4′-phosphopantetheine (P-PantSH), which can be further processed by the enzymes downstream in the pathway to form CoA (Fig. 1)3, 21. Therefore the presence of residual activities of PANK in the PKAN models, or the redundant activities of other PANKs, or a yet un-identified pantetheine kinase could explain the observed rescue by PantSSPant in various PKAN models. One limitation for further development of PantSSPant or PantSH as a possible treatment for PKAN is the instability of PantSH in mammals due to the presence of pantetheinases (members of the Vanin family) in the gastrointestinal mucosa and in serum. These enzymes degrade pantetheine into Pan and the antioxidant cysteamine22,23,24,25,26 (Fig. 1). Several strategies have been explored to increase the serum-stability of PantSH and compounds similar in structure to PantSH (the so-called N-substituted pantothenamides) by modifications of the scissile amide bond present in pantothenamides or alternatively by modifications to the cysteamine moiety of PantSH24, 27, 28. These results demonstrate that the activity of pantetheinase is not hindered by various modifications of the cysteamine moiety. However, modifying the scissile bond does impair pantetheinase activity and renders these compounds resistant to degradation. Additionally, the reliance of PantSH based compounds on residual PANK, or alternative kinase activity, is a potential risk in translation of efficacy from preclinical models towards clinical use in humans.
Recently we demonstrated that in contrast to PantSH, the naturally occurring CoA precursor P-PantSH is stable in mammalian serum. In addition, P-PantSH is stable in vivo in mice, has membrane-crossing properties and is able to restore levels of CoA under conditions of impaired PANK activity. As a result, it rescues phenotypes induced by decreased levels of CoA such as sterility, developmental arrest, neurodegeneration and life span in Drosophila 29. Synthesis of P-PantSH at sufficient purity for biological evaluation is challenging due to the presence of a free thiol, which hinders purification and may also influence the oxidative stability after its synthesis. This is a significant consideration for potential therapeutics, which must be produced to clinical standards and be sufficiently stable for distribution. No information is yet known whether modifications of P-PantSH can influence the serum stability and/or rescue potential of this molecule; specifically modifications of the free thiol of P-PantSH. Here our aim was to design a synthesis for S-acetyl-4′-phosphopantetheine (P-PantSAc), which incorporates purification in the final acylated form only, and to investigate whether addition of an acetyl group to the thiol moiety of P-PantSH affects its serum stability and its rescue abilities of phenotypes induced by impaired CoA biosynthesis.
P-PantSAc is also of interest because it may serve to be an alternative source for both CoA and acetyl-CoA (AcCoA). This is supported by the fact that S-acetyl-pantetheine (PantSAc) can be converted to AcCoA by PanK, PPAT and DPCK from Escherichia coli 30. Here, our findings demonstrate that P-PantSAc is stable in serum and possesses rescue potential comparable to 4′-phosphopantetheine in both in vitro and in vivo models. Taken together, P-PantSAc is a promising candidate replacement therapy for neurodegeneration associated with impaired activity of PANK2.
Materials and Methods
Stability of metabolites in FCS
The stability of the PantSH, P-PantSH and PantSAc was determined by incubating each compound in fetal calf serum (Gibco; pre-incubated at 37 °C for 30 min). Each compound was incubated in a final concentration of 1 mM in the presence of 50% FCS. Stock concentrations of each compound were prepared in PBS, and control samples contained only PBS with no FCS. The samples were incubated at 37 °C for a further 30 min after which 8.33 mM TCEP was added. After incubation at room temperature for 15 min, the samples were transferred to a Millipore 3 K centrifugal filter unit and centrifuged at 14000 rpm for 15 min at 4 °C. The filtrate of each sample was transferred to HPLC vials and analyzed. HPLC analyses were performed on a Shimadzu LC-10AC HPLC, SCL-10A system controller, SIL SCL-10A system controller, SIL-10AC automatic sample injector and LC-10AT solvent delivery system. Compounds were detected by a Shimadzu SPD-20A UV/VIS detector at a wavelength of 205 nm. Signal output was collected digitally with Shimadzu Labsolution software and post-run analyses were performed. Chromatographic separation of the analytes was achieved with a Phenomenex C18 guard column (4 × 3mm) connected to a Phenomenex Synergi Hydro-RP analytical column (4.6 × 150mm; 3 µm particles) at 30 °C. The two mobile phases consisted of solvent A: 20 mM KH2PO4 buffer (pH 3) containing 0.1% (m/v) hexansulfonate and solvent B: acetonitrile. Flow rate was maintained at 1 mL/min with a slow gradient elution: 0–5 min 0% solvent B; 5–18 min 30% solvent B; 18–21 min 50% solvent B; 21–23 min 50% solvent B; 23–24 min 0% solvent B; and 24–30 min 0% solvent B for re-equilibration.
Toxicity in HEK293 cells
HEK293 cells were maintained in dMEM (Invitrogen) supplemented with 10% FCS (Gibco) and antibiotics (penicillin/streptomycin, Invitrogen). For toxicity assays, cells were transferred to 6-well sterile culture plates with dMEM media (containing 10% FCS and antibiotics) and supplemented with either PantSH, P-PantSH or P-PantSAc to achieve a final cell concentration of 0.1 × 106 cells in 3 ml final volume. Compounds were tested in varying concentrations (0–500 μM). Cells were incubated for 4 days at 37 °C, after which a manual cell count was performed to determine survival.
Drosophila S2 Cell Culture, HoPan treatment, RNA Interference, 4′-phosphopantetheine/P-PantSAc treatment
Drosophila Schneider′s S2 cells were maintained as described previously29. For HoPan treatment, cells were cultured in Schneider’s medium with HoPan at a final concentration of 0.5 mM. P-PantSH or P-PantSAc was added to the cells for a final concentration of 100 µM. Two days after the start of treatment the cells were counted.
Synthesis of dPANK/fbl-RNAi constructs and treatment with RNA interference (dPANK/fbl dsRNA) was performed as described previously31. As a control S2 cells were treated with a irrelevant RNAi construct targeted against the human gene hMAZ. Briefly, the cells were incubated with dsRNA for 4 days to induce efficient knock-down and were then sub-cultured, with or without PPantSH (Acies Bio, >92%) or P-PantSAc (Acies Bio, >91%) at 100 µM each and maintained for an additional 3 days, after which they were counted.
HoPan treatment of mammalian HEK293 cells in combination with P-PantSH and P-PantSAc treatment
HEK293 cells were maintained as described previously29. For HoPan treatment, cells were cultured in custom-made dMEM without vitamin B5 (Thermo Scientific) and supplemented with dialyzed FCS (Thermo Scientific). P-PantSH or P-PantSAc was added to the cells for a final concentration of 25 µM for 4 days in the presence of HoPan at a final concentration of 0.5 mM. Four days after the start of treatment the cells were counted.
Drosophila S2 Cell Immunofluorescence Staining
Immunofluorescence analysis on Drosophila S2 cells was performed as described in detail previously29. Briefly, the cells were stained with rabbit anti-AcLys antibody (Cell Signaling Cat No: 9441, 1:500) as primary and goat anti-rabbit-Alexa488 antibody (Molecular Probes) as secondary antibody. Rhodamin-Phalloidin (20U/ml) (Invitrogen) was used to detect F-actin, and DNA was detected by DAPI (0.2 μg/ml) (Thermo Scientific). The samples were analyzed with a Leica fluorescence microscope with Leica software. Adobe Photoshop and Illustrator (Adobe Systems Incorporated, San Jose, California, USA) were used for image assembly.
Drosophila Maintenance, HoPan Toxicity and CoA/P-PantSAc Rescue Experiment
Drosophila melanogaster stocks were maintained on standard cornmeal agar fly food (containing water, agar 17 g/L, sugar 54 g/L, yeast extract 26 g/L and nipagin 1.3 g/L) at 25 °C.
For the HoPan toxicity assay, w1118 flies (Bloomington Stock Centre (Indiana University, USA)) (10 females + 5 males) were raised in vials with standard food with or without HoPan at a final concentration of 5 mM and CoA or P-PantSAc at a final concentration of 6 mM. The flies were allowed to lay eggs for 2 days, after which the adults were discarded. The resulting offspring were allowed to develop. The numbers of pupae were counted to evaluate HoPan toxicity and CoA or P-PantSAc rescue efficiency.
Mice treatments
Animal studies were approved by the Ethics Committee of the Foundation IRCCS Neurological Institute C. Besta, in accordance with guidelines of the Italian Ministry of Health, Project No. BT4/2014. The use and care of animals followed ItalianLaw D.L. 116/1992 and EU directive 2010/63/EU. Six week-old C57BL/6 N male mice (Charles River) were housed with a stocking density of 2/3 per cage in a temperature-controlled (21 ± 2 °C) room with a 12 h light/dark cycle and 55 ± 10% relative humidity and access to food and water ad libitum. Mice were pre-conditioned with a low pantothenic acid (PA)-diet (Harlan 95248RC) for 2 weeks before the start of treatments and maintained on the same diet for the whole experimental period. HoPan (100 μg/g/day) and/or CoA (100 μg/g/day, SIGMA) and/or P-PantSAc (100 μg/g/day) were dissolved in water and administered by oral gavage daily using polypropylene 20G-feeding tubes (Instech). Mouse weight and food and water intakes were recorded daily. Euthanasia was carried out by cervical dislocation.
Acylcarnitines measurement
Liver tissue was homogenized and tissue extracts prepared as previously described32, 33. Briefly, after addition of an internal standard control solution (0.02 μg/μl methyl-D3-carnitine; 0.01 μg/μl heptanoylcarnitine; 0.01 μg/μl undecanoylcarnitine), homogenates were treated with acetonitrile and centrifuged at 10000 X g for 10 minutes. Surpernatants were collected and mixed with hexanes to separate the organic phase containing neutral lipids and the aqueous phase containing acylcarnitines. This second phase was dried under nitrogen, derivatized with butanol and acetyl-chloride, and incubated at 63 °C for 20 minutes. Each sample was diluted and analysed by ESI/MS/MS (Electrospray Ionization Tandem Mass Spectrometry) using an AB Sciex Api2000 Triple Quadrupole. Free carnitine and acylcarnitine profile was determined using scanning for precursor ions at m/z = 85.1. Quantification was performed using Chemo View software. Protein concentration was determined by Lowry method.
Tubulin acetylation
Livers were homogenized on ice with a glass-glass potter and lysed using RIPA buffer (50 mM Tris pH 8, 150 mM NaCl, 1% NP40, 0.5% Na-deoxycholate, 0.1% SDS, 5 mM EDTA pH 8) with addition of protease inhibitor cocktail (Roche). Proteins were quantified by BioRad protein assay according to manufacturer instructions. Equal amounts of proteins (20 μg) were resolved on a 12% SDS-polyacrilamide gel and electroblotted onto nitrocellulose membrane. Filters were incubated with mouse monoclonal anti-acetylated tubulin antibody (clone 6–11B-1, Sigma). Equal loading was verified using a mouse monoclonal anti-GAPDH antibody (clone 6C5, Millipore). Peroxidase-conjugated secondary antibodies (Amersham) were visualized using the ECL method with autoradiography film. Analysis of Tubulin and histone acetylation levels of Schneider’s S2 cells was performed as previously described5, 31. For scans of images of full blots see the Supplementary Figs S1 and S2.
Free CoA measurements
Tissue samples (~100 mg) were homogenized in 1 ml ice cold MilliQ water using 2.3 mm Zirconia/Silica beads and Precellys beadbeater system (6000 rpm; −2 × 15 sec). Samples were centrifuged at 16,000 × g at 4 °C for 20 min to collect the supernatant. To 10 µl tissue homogenate, 5 µl TCEP 50 mM was added and incubated for 15 minutes at room temperature. Subsequently, 8 µl ammonium hydroxide (12.5%) and 50 µl saturated ammonium sulfate were added to each sample and centrifuged for 5 min at 5500 rcf. To each supernatant, 300 µl MeOH/ACN (methanol/acetonitrile) was added. Appropriate dilution series of CoA standards were similarly processed before analysis. Extracts were injected onto Shimadzu Nexera HPLC system equipped with a Sciex API 5500 mass spectrometer from Applied Biosystems. The analytical column used was a SeQuant ZIC cHILIC guard column (20 × 2.1 mm) connected to a Merck seQuant ZIC cHILIC column (3 µm, 100 × 4.6 mm). The mobile phase consisted of solvent A: 5% acetonitrile in milli-Q water; solvent B: 200 mM ammonium acetate pH 4.5 and solvent C: acetonitrile. The following LC solvent program (1.2 mL/min; 40 °C) was used, where solvent B was kept at 20%: [0–1 min]: 5% solvent A, 75% solvent C; [1–3 min]: 20% solvent A, 60% Solvent C; [3–6 min]: 20% solvent A, 60% solvent C; [6–6.1 min]: 5% solvent A, 75% solvent C; [6.1–9 min]: 5% solvent A, 75% solvent C. The tandem mass spectrometry system was operated in positive ion mode. The detailed mass spectrometer conditions were as follows: probe temperature, 700 °C; ionization spray voltage, 5500 V; Turbo Ion Spray gas 1, 40 psi; collisionally activated dissociation gas, nitrogen, adjusted at 8 on a Sciex scale of 0–12; curtain gas, nitrogen, adjusted at 25 psig. The following multiple-reaction monitoring transitions were optimized: m/z 768 → 261 (CoA).
Electron microscopy
Small pieces of liver tissues were fixed in 2% glutaraldehyde and 0.1 M sodium cacodylate (pH 7.4) and stored at 4 °C until usage. Pieces of 3mm3 were then generated and incubated in fresh 2% glutaraldehyde and 0.1 M sodium cacodylate (pH 7.4) for 24 hrs. Samples were rinsed twice in 0.1 M sodium cacodylate (pH 7.4) and subsequently post-fixed in 1% osmium tetroxide (OsO4) and 1.5% potassium ferrocyanide (K4Fe(CN)6) in 0.1 M sodium cacodylate at 4 °C for 2 hrs. Samples were rinsed in ddH2O, dehydrated in a graded ethanol series until 100% ethanol. Ethanol was replaced by acetone (RT) and kept in 1:1 ratio of epoxy resin: acetone while rotating (RT) for 10 hours. Epoxy resin (50%) was replaced with 100% resin for 30 min (RT) while rotating (3X). Samples were placed for 20 min at 58 °C and 1 hour at 37 °C under low pressure (200 mbar). Epoxy resin was polymerized at 58 °C. Ultrathin sections were placed on copper grids, and uranyl acetate in methanol followed by lead citrate were used to contrast the sections. Images were taken by transmission electron microscope (Philips CM100).
Statistical analysis
Specific information per experiment is provided in the Figure Legends. All measurements were performed in triplicate at a minimum, and for all studies at least 3 mice were used per condition and measurement, unless indicated otherwise.
Results
Synthesis of P-PantSAc
In order to investigate the possibility of acetylation of the free thiol of P-PantSH (Fig. 2a), this molecule was synthesized as previously described29, with the intention of direct synthetic transformation to P-PantSAc (Fig. 2a). Initial acetylation attempts of P-PantSH with thioacetic acid resulted in <50% conversion, despite use of excess reagent or elevated temperatures (data not shown). As an alternative approach, in order to stabilize the free phosphate we converted the P-PantSH to the calcium salt which was subsequently treated with thioacetic acid (Fig. 2a). This resulted in complete conversion during acetylation as determined by LC-MS. Following purification, P-PantSAc was obtained as a calcium salt in excellent yields of (91%), with a purity of 95%, and retained favorable physical properties including high water solubility, which facilitated characterization of biological activity.
Stability and toxicity of P-PantSAc
Since PantSH and specific PantSH derivatives are degraded in serum by the presence of pantetheinases22,23,24,25,26, we first investigated the stability of P-PantSAc in the presence of serum. This experiment was done in parallel with PantSH (which is not stable in serum) and P-PantSH (which is stable in serum)29 that served as positive and negative controls. Each compound was incubated for 30 min at 37 °C in Fetal Calf Serum (FCS). The HPLC analysis indicated that P-PantSH and P-PantSAc were stable in the presence of FCS, with 96% and 91% respectively of the compounds still present in the sample after incubation (Fig. 2b). These results showed that P-PantSAc has increased stability in serum compared to PantSH, of which levels were reduced to 36% after incubation in FCS. The addition of the acetyl group did not influence the serum-stable characteristics of P-PantSH as P-PantSAc showed comparable stability to the parent compound.
Next, we compared the toxicity of increasing concentrations of PantSH, P-PantSH and P-PantSAc in a cell-based assay. Human embryonic kidney cells (HEK293) were cultured under normal conditions allowing exponential cell growth, with and without addition of the compounds in the growth medium in various concentrations. After 4 days the cell count was determined. Whereas increasing concentrations (>100 µM) of PantSH clearly resulted in decreased cell proliferation, P-PantSH and P-PantSAc did not show toxicity up to 500 µM (Fig. 2c–e). The observed toxicity of PantSH is consistent with a previous study18.
Rescue potential of P-PantSAc in cells
The acetylation of the terminal thiol of P-PantSH did not alter the stability or toxicity of the parent compound. We subsequently tested whether P-PantSAc possesses rescue abilities of conditions induced by impaired CoA biosynthesis comparable to that of P-PantSH29. Cells were treated with the PANK inhibitor HoPan, a Pan antimetabolite, which inhibits phosphorylation of Pan by PANK, leading to decreased biosynthesis and levels of CoA29, 34. Consistent with previous reports, HoPan addition was associated with decreased cell viability29, 34. P-PantSH and P-PantSAc both rescued the decreased cell count induced by addition of HoPan to the growth medium. This effect was observed in insect Schneiders’ S2 cells (Fig. 2f) and in the mammalian cell line HEK293 (Fig. 2g). In addition, downregulation of Drosophila PANK (dPANK/fbl) by RNAi also resulted in decreased cell count, and addition of P-PantSAc normalized cell counts back to control levels (Fig. 2h).
AcCoA/CoA levels determine lysine acetylation levels, and cells treated with HoPan show decreased levels of acetylated lysine29, 31. We tested whether addition of P-PantSAc also could rescue this cellular phenotype induced by impaired biosynthesis of CoA. Levels of acetylated lysine, as visualized by immunohistochemistry and Western blot analysis, were decreased under conditions of dPANK/fbl RNAi treatment (Fig. 3a–g) and were restored after addition of P-PantSAc (Fig. 3a–g), comparable to levels in the control (Fig. 3a–g).
To further investigate the potential of P-PantSAc, we investigated whether the compound could restore HoPan-induced lethality in an animal model of compromised CoA biosynthesis. Drosophila larvae were fed HoPan, which induced lethality early during development as previously reported29. For all cell-based assays done, synthetically prepared P-PantSH was used as a positive control (Fig. 2b–h). However, availability of P-PantSH is limited and its synthesis challenging. Therefore in all in vivo experiments (flies and mice) requiring relatively large amounts of P-PantSH, commercially purchased CoA was used as a source of P-PantSH in the positive control. In Drosophila and mice, CoA is converted to P-PantSH, and the rescue potential of P-PantSH similar to that of CoA29. Comparable to CoA, P-PantSAc fully rescued HoPan-induced larval lethality (Fig. 3h). This supports the finding that P-PantSAc is a stable non-toxic compound able to rescue various phenotypes induced by impaired PANK-dependent CoA de novo biosynthesis in insect and mammalian cells and in Drosophila larvae.
Rescue potential of P-PantSAc in HoPan treated mice
In order to test the rescue potential of P-PantSAc in vivo in an established mammalian setting, we used HoPan-treated mice as previously described34. For these experiments mice were kept on pantothenate deprived diet for 2 weeks before HoPan was provided34. HoPan-treated mice became lethargic after 5–6 days of treatment, requiring euthanasia (Fig. 4a). Measurement of CoA levels in liver tissue from 5 day-HoPan-treated animals revealed a large decrease in CoA levels compared to mice kept on normal diet or pantothenate deprived diet, consistent with previous reports34 (Fig. 4b). Remarkably, pantothenate deprived diet alone was associated with an increase in free liver CoA levels compared to control diet. An explanation for this effect is presently unavailable, however, it could be a compensatory mechanism present in the liver. Various concentrations of CoA and P-PantSAc were tested on HoPan-treated mice for their rescue potential. A dose of 100 μg/g/day of either CoA or P-PantSAc provided via oral gavage for 11 days fully restored liver CoA levels (Fig. 4b). This concentration was used for all subsequent experiments. In addition to their shortened lifespan and decreased liver CoA levels, HoPan-treated mice displayed reduced spontaneous movements (Supplementary Video S1), decreased body weight (Fig. 4c) and less food intake (Fig. 4d), increased levels of liver carnitine and acylcarnitines (Fig. 4e,f), and reduced tubulin acetylation (Fig. 4g,h ), all manifestations of severe CoA deficiency. During 11 days of simultaneous treatment with HoPan and either CoA or P-PantSAc, mice maintained their weight, remained healthy, and exhibited normal exploratory behavior (Fig. 4a–d; Supplementary Video S2). Moreover, levels of carnitine and long-chain acylcarnitines and the level of tubulin acetylation were similar to levels from control mice treated with vehicle alone (Fig. 4e–g,h). These results provide direct evidence that P-PantSAc is able to protect against HoPan-induced impairment (Fig. 4e–h, and Supplementary Video S3) and is comparable to the protection using CoA. The HoPan-induced phenotype in mice arises primarily from the effect of HoPan on liver34. Indeed electron microscopic analysis of liver tissue demonstrated that HoPan induces the formation of lipid droplets, depletes glycogen in liver, and dilates the endoplasmatic reticulum, all features that are prevented by oral feeding of CoA or P-PantSAc to the mice (Fig. 5). The previously reported HoPan-induced disorganization of mitochondrial cristae34 was not observed in our study. No toxicity from P-PantSAc or CoA was observed in the treated mice. Moreover when mice were treated with 100 µg/g of P-PantSAc intraperitoneally every other day for 75 days, no differences were observed in weight gain or in the histology of liver, heart, brain and testis compared to vehicle-treated mice (data not shown). These results demonstrate that P-PantSAc is able to prevent CoA depletion and its associated phenotypes in HoPan treated mice.
Discussion
We describe the synthesis, purification and characterization of the P-PantSH derivative, P-PantSAc, a serum-stable compound that replenishes CoA/AcCoA levels and prevents phenotypes associated with PANK deficiencies. The rescuing characteristics of P-PantSAc are comparable to those described for P-PantSH and CoA20, 29, 35(and this manuscript), suggesting that all three molecules have therapeutic potential for PKAN. P-PantSAc may have advantages because the synthesis procedure allows for linkage of other acyl moieties to P-PantSH in order to convert P-PantSH into various acyl derivatives. P-PantSAc can be converted into AcCoA by the CoA machinery from bacteria30, suggesting that levels of any acyl-CoA of choice could be increased by adding specific P-PantS-Acyl forms to cells or organisms. This enables influencing numerous metabolic processes that require specific acyl-CoAs; however, further research is needed to understand the potential impact of P-PantSAc and other P-PantSAcyl forms on AcCoA/CoA ratios and levels, intermediary metabolism and other critical cellular processes.
In this manuscript we focus on the potential of P-PantSAc to prevent phenotypes induced by impaired function of the first step (i.e., Pan phosphorylation by PANK) in the canonical CoA de novo biosynthesis pathway. One effective strategy to block this step is treatment of cells or mice with HoPan34. In mice, HoPan inhibits all PANK activity and induces a more dramatic liver-centric phenotype compared to impairment of single PANK isoforms via genetic manipulations. This explains why HoPan treated mice survive for only 5–6 days whereas Pank2 −/− or Pank1 −/− single homozygous knockout mice are viable36, 37. Therefore, HoPan treated mice may be considered to be an exaggerated biochemical model of PKAN, and any compound that is able to prevent its severe phenotype has potential to also prevent the impaired function associated with defective PANK2, as in PKAN. However, the addition of Pan has been shown to rescue HoPan induced phenotypes34, therefore our results do not exclude the possibility that in mice in vivo P-PantSAc is degraded leading to Pan mediated rescue. Nevertheless, our results demonstrating that P-PantSAc also prevents various phenotypes induced by eliminating PANK using RNAi, support the rescue potential of P-PantSAc directly. Moreover, the possibility of direct conversion of P-PantSAc to AcCoA via COASY30, suggests a strong translational potential of P-PantSAc towards clinical applications. Next, it will be important to investigate whether P-PantSAc can rescue other genetic models for PKAN such as: the fruitfly model8, 18, 29, 31, a zebrafish model20 and iPS-derived neurons generated from PKAN patients35, models in which CoA was proven to be successful.
Because PKAN is a disorder of the central nervous system, another critical follow-up study is to investigate whether P-PantSAc is able to cross the blood-brain barrier. Limited information is available concerning blood-brain barrier-passing capacities of CoA precursors. Specific synthetic modifications of P-Pan, phosphopantothenate aryl phosphoramidate derivatives, provided to Pan1 −/− mice via the oral, intraperitoneal or intravenous routes resulted in restoration of decreased levels of CoA in liver but not in brain38. P-PantSH has the ability to cross biological membranes in vivo and artificial membranes in vitro that mimic the blood-brain barrier29. It remains to be investigated whether cellular uptake of P-PantSAc is comparable to P-PantSH.
In conclusion we demonstrate the successful synthesis of the pantetheine-derivative P-PantSAc, its serum-stability and low toxicity, and its rescue potential in various PANK deficient models. Finally, the availability of P-PantSAc and other P-PantS-Acyl forms will be valuable tools to interrogate the cellular physiology of CoA and CoA derivatives.
References
Lipmann, F. & Kaplan, N. O. Coenzyme for acetylation, a pantothenic acid derivative. The Journal of biological chemistry 167, 869 (1947).
Leonardi, R., Zhang, Y. M., Rock, C. O. & Jackowski, S. Coenzyme A: Back in action. Progress in Lipid Research 44, 125–153 (2005).
Strauss, E. In Comprehensive Natural Products II Chemistry and Biology 7, 351–410 (2010).
Pietrocola, F., Galluzzi, L., Bravo-San Pedro, J. M., Madeo, F. & Kroemer, G. Acetyl coenzyme A: A central metabolite and second messenger. Cell Metabolism 21, 805–821 (2015).
Srinivasan, B. et al. Coenzyme A, more than ‘just’ a metabolic cofactor. Biochemical Society transactions 42, 1075–9 (2014).
Sibon, O. C. M. & Strauss, E. Coenzyme A: to make it or uptake it? Nat Rev Mol Cell Biol 17, 605–606 (2016).
Afshar, K., Gönczy, P., DiNardo, S. & Wasserman, S. A. fumble encodes a pantothenate kinase homolog required for proper mitosis and meiosis in Drosophila melanogaster. Genetics 157, 1267–1276 (2001).
Bosveld, F. et al. De novo CoA biosynthesis is required to maintain DNA integrity during development of the Drosophila nervous system. Human Molecular Genetics 17, 2058–2069 (2008).
Daugherty, M. et al. Complete reconstitution of the human coenzyme A biosynthetic pathway via comparative genomics. Journal of Biological Chemistry 277, 21431–21439 (2002).
Kupke, T., Hernández-Acosta, P. & Culiáñez-Macià, F. A. 4′-Phosphopantetheine and coenzyme a biosynthesis in plants. Journal of Biological Chemistry 278, 38229–38237 (2003).
Song, W. J. & Jackowski, S. Cloning, sequencing, and expression of the pantothenate kinase (coaA) gene of Escherichia coli. Journal of Bacteriology 174, 6411–6417 (1992).
Strauss, E., Kinsland, C., Ge, Y., McLafferty, F. W. & Begley, T. P. Phosphopantothenoylcysteine Synthetase from Escherichia coli. Identification and characterization of the last unidentified coenzyme A biosynthetic enzyme in bacteria. Journal of Biological Chemistry 276, 13513–13516 (2001).
Nemazanyy, I. et al. Identification of a novel CoA synthase isoform, which is primarily expressed in the brain. Biochemical and Biophysical Research Communications 341, 995–1000 (2006).
Dusi, S. et al. Exome sequence reveals mutations in CoA synthase as a cause of neurodegeneration with brain iron accumulation. American Journal of Human Genetics 94, 11–22 (2014).
Khatri, D. et al. Down-regulation of coasy, the gene associated with NBIA-VI, reduces Bmp signaling, perturbs dorso-ventral patterning and alters neuronal development in zebrafish. Scientific Reports 6, 37660 (2016).
Zhou, B. et al. A novel pantothenate kinase gene (PANK2) is defective in Hallervorden-Spatz syndrome. Nature genetics 28, 345–349 (2001).
Meyer, E., Kurian, Ma & Hayflick, S. J. Neurodegeneration with Brain Iron Accumulation: Genetic Diversity and Pathophysiological Mechanisms. Annual review of genomics and human genetics 16, 257–79 (2015).
Rana, A. et al. Pantethine rescues a Drosophila model for pantothenate kinase-associated neurodegeneration. Proceedings of the National Academy of Sciences of the United States of America 107, 6988–93 (2010).
Brunetti, D. et al. Pantethine treatment is effective in recovering the disease phenotype induced by ketogenic diet in a pantothenate kinase-associated neurodegeneration mouse model. Brain 137, 57–68 (2014).
Zizioli, D. et al. Knock-down of pantothenate kinase 2 severely affects the development of the nervous and vascular system in zebrafish, providing new insights into PKAN disease. Neurobiology of Disease 85, 35–48 (2016).
Balibar, C. J., Hollis-Symynkywicz, M. F. & Tao, J. Pantethine rescues phosphopantothenoylcysteine synthetase and phosphopantothenoylcysteine decarboxylase deficiency in Escherichia coli but not in Pseudomonas aeruginosa. Journal of Bacteriology 193, 3304–3312 (2011).
Kaskow, B. J., Michael Proffit, J., Blangero, J., Moses, E. K. & Abraham, L. J. Diverse biological activities of the vascular non-inflammatory molecules - The Vanin pantetheinases. Biochemical and Biophysical Research Communications 417, 653–658 (2012).
Wittwer, C. T., Gahl, W. A., DeB, Butler,J., Zatz, M. & Thoene, J. G. Metabolism of pantethine in cystinosis. Journal of Clinical Investigation 76, 1665–1672 (1985).
Spry, C. et al. Pantothenamides Are Potent, On-Target Inhibitors of Plasmodium falciparum Growth When Serum Pantetheinase Is Inactivated. PLoS ONE 8, (2013).
De Villiers, M. et al. Structural modification of pantothenamides counteracts degradation by pantetheinase and improves antiplasmodial activity. ACS Medicinal Chemistry Letters 4, 784–789 (2013).
Jansen, P. A. M. et al. Combination of pantothenamides with vanin inhibitors as a novel antibiotic strategy against gram-positive bacteria. Antimicrobial Agents and Chemotherapy 57, 4794–4800 (2013).
Lambrechts, R. A. et al. Synthesis and Characterization of a Pantetheine Derivative. 4, 676–686 (2014).
Howieson, V. M. et al. Triazole Substitution of a Labile Amide Bond Stabilizes Pantothenamides and Improves Their Antiplasmodial Potency. 60, 7146–7152 (2016).
Srinivasan, B. et al. Extracellular 4′ -Phosphopantetheine is a source for intracellular Coenzyme A synthesis. Nature Chemical Biology 1–26, doi:10.1038/nchembio.1906 (2015).
Agarwal, V. et al. Chemoenzymatic Synthesis of Acyl Coenzyme A Substrates Enables in Situ Labeling of Small Molecules and Proteins. Organic Letters 17, 4452–4455 (2015).
Siudeja, K. et al. Impaired Coenzyme A metabolism affects histone and tubulin acetylation in Drosophila and human cell models of pantothenate kinase associated neurodegeneration. EMBO Molecular Medicine 3, 755–766 (2011).
Vreken, P. et al. Quantitative plasma acylcarnitine analysis using electrospray tandem mass spectrometry for the diagnosis of organic acidaemias and fatty acid oxidation defects. in. Journal of Inherited Metabolic Disease 22, 302–306 (1999).
Delolme, F. et al. [Study of plasma acylcarnitines using tandem mass spectrometry. Application to the diagnosis of metabolism hereditary diseases]. Etude des acylcarnitines plasmatiques par spectrometrie de masse en tandem. Application au diagnostic des maladies hereditaires du metabolisme. 4, 819–826 (1997).
Zhang, Y. M. et al. Chemical Knockout of Pantothenate Kinase Reveals the Metabolic and Genetic Program Responsible for Hepatic Coenzyme A Homeostasis. Chemistry and Biology 14, 291–302 (2007).
Orellana, D. I. et al. Coenzyme A corrects pathological defects in human neurons of PANK2-associated neurodegeneration. EMBO Molecular Medicine e201606391, doi:10.15252/emmm.201606391 (2016).
Leonardi, R., Rehg, J. E., Rock, C. O. & Jackowski, S. Pantothenate kinase 1 is required to support the metabolic transition from the fed to the fasted state. PLoS ONE 5, (2010).
Kuo, Y. M. et al. Deficiency of pantothenate kinase 2 (Pank2) in mice leads to retinal degeneration and azoospermia. Human Molecular Genetics 14, 49–57 (2005).
Zano, S. P., Pate, C., Frank, M., Rock, C. O. & Jackowski, S. Correction of a genetic deficiency in pantothenate kinase 1 using phosphopantothenate replacement therapy. Molecular Genetics and Metabolism 116, 281–288 (2015).
Acknowledgements
This work was supported by the European Commission’s Seventh Framework Programme [grant number FP7/2007–2013, HEALTH-F2–2011, grant agreement number 277984, TIRCON] to V.T., S.H., G.K. and O.C.M.S., by a GUIDE research school grant to B.S., a VICI grant to O.S (NWO-grant 865.10.012), a Telethon-Italia grant (Grants no. GGP16234) to V.T., the Mariani Foundation of Milan and a grant from AISNAF Foundation Italy to I.D.M and a “KROP” grant to Acies Bio (Contract No. C2130-14-090124), awarded by the European Social Fund and the Ministry of Economic Development and Technology of Slovenia. Part of the work has been performed at the UMCG Microscopy and Imaging Center (UMIC), which is sponsored by NWO-grant 175–010–2009–023.
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S.J.H., V.T. and O.S. wrote the manuscript. I.D.M., C.C.,E.R. performed experiments of Fig. 4 a,c–g. B.S., M.d.e.V, M.v.d.Z., P.G.T., performed experiments of Fig. 2. C.H.H. performed experiments of Fig. 3d. N.A.G. performed experiment of Fig. 3a-c and designed Fig. 1. T.d.e.B. performed the experiments in Fig. 4b. L.L.H. performed the experiments in Fig. 5. B.J., A.C., J.P., G.K. synthesized the 4′-phosphopantetheine. J.H., S.Y.J., R.F. and R.L.W. performed all experiments described in the text, last paragraph. All authors have reviewed the manuscript.
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B.S., O.C.M.S. and G.K., are co-inventors on European patent application EP 2 868 662 A1. B.S., O.C.M.S. and G.K. are co-inventors on the Slovenian patent application P-201400452. B.S., O.C.M.S., G.K., and S.H. are co-inventors on the Slovenian patent application EP 15468006.0. H.P. and G.K. are shareholders in Acies Bio, Ltd.
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Di Meo, I., Colombelli, C., Srinivasan, B. et al. Acetyl-4′-phosphopantetheine is stable in serum and prevents phenotypes induced by pantothenate kinase deficiency. Sci Rep 7, 11260 (2017). https://doi.org/10.1038/s41598-017-11564-8
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DOI: https://doi.org/10.1038/s41598-017-11564-8
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