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Characterizing the metabolomes of phase-separated condensates

Cells contain compartments composed of phase-separated protein condensates. We find that these condensates have a unique chemical microenvironment that enriches amphipathic metabolites such as phospholipids. Therefore, condensates are mixtures of proteins, nucleic acids and specific metabolites. The presence of phospholipids and other amphipathic metabolites might enable condensates to facilitate specific metabolic reactions.

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Fig. 1: Measuring the metabolomes of biomolecular condensates.

References

  1. Hirose, T., Ninomiya, K., Nakagawa, S. & Yamazaki, T. A guide to membraneless organelles and their various roles in gene regulation. Nat. Rev. Mol. Cell. Biol. 24, 288–304 (2023). This review discusses the biological processes associated with gene regulation that occur within condensates.

    Article  CAS  PubMed  Google Scholar 

  2. Boronenkov, I. V., Loijens, J. C., Umeda, M. & Anderson, R. A. Phosphoinositide signaling pathways in nuclei are associated with nuclear speckles containing pre-mRNA processing factors. MBoC 9, 3547–3560 (1998). This paper identifies phosphoinositides and phosphoinositide-modifying proteins in nuclear speckles.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Klein, I. A. et al. Partitioning of cancer therapeutics in nuclear condensates. Science 368, 1386 (2020). This paper demonstrates that a small-molecule chemotherapeutic can partition into a mediator of RNA polymerase II transcription subunit 1 (MED1)-containing condensates.

    Article  CAS  PubMed  PubMed Central  ADS  Google Scholar 

  4. Martin, E. W. & Mittag, T. Relationship of sequence and phase separation in protein low-complexity regions. Biochemistry 57, 2478–2487 (2018). This article highlights how different sequences in low-complexity regions can affect phase separation.

    Article  CAS  PubMed  Google Scholar 

  5. Milkovic, N. M. & Mittag, T. in Intrinsically Disordered Proteins: Methods and Protocols 1st edn, Vol. 2141 (eds. Kragelund, B. B. & Skriver, K.) 685–702 (Humana, 2020). This paper provides a general method for the separation of condensates by centrifugation.

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This is a summary of: Dumelie, J. G. et al. Biomolecular condensates create phospholipid-enriched microenvironments. Nat. Chem. Biol. https://doi.org/10.1038/s41589-023-01474-4 (2023).

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Characterizing the metabolomes of phase-separated condensates. Nat Chem Biol 20, 273–274 (2024). https://doi.org/10.1038/s41589-023-01487-z

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