Abstract
Selective self-assembly of heterodimers consisting of two non-identical subunits plays important roles in Nature but is rarely encountered in synthetic supramolecular systems. Here we show that photocleavage of a donor–acceptor porphyrin complex produces an heterodimeric structure with surprising selectivity. The system forms via a multi-step sequence that starts with an oxidative ring opening, which produces an equimolar mixture of two isomeric degradation products (zinc(II) bilatrien-abc-ones, BTOs). These two isomers are susceptible to water addition, yielding the corresponding zinc(II) 15-hydroxybiladien-ab-ones (HBDOs). However, in the photocleavage experiment only one HBDO isomer is formed, and it quantitatively combines with the remaining BTO isomer. The resulting heterodimer is stabilized by a Zn–O coordination bond and extended dispersion interactions between the overlapping π-surfaces of the monomers. The observed selectivity can be seen as a case of completive self-sorting, simultaneously controlled by three types of complementary interactions.
Similar content being viewed by others
Introduction
Oligomerization of functional monomers enables rapid synthesis of large structures from smaller components and plays an important role in supramolecular and biomolecular self-organization. Self-assembly of identical subunits can produce rapid increase in molecular size, however, the high symmetry of the resulting constructs limits their potential function. At the same time, multicomponent self-assembly plays important roles in biological systems, e.g. in allosteric regulation1. In supramolecular chemistry, interactions between non-equivalent subunits are usually controlled by social self-sorting algorithms2,3, which employ libraries of carefully designed components containing multiple orthogonal binding sites, and can be used to create complex structures, such as capsules4, polymers5,6, or gels7. Formation of heterodimers may be seen as the simplest case of multicomponent self-assembly, with important examples among enzymes and protein receptors8,9. In supramolecular chemistry, heterodimers may act e.g. as energy transfer systems10, however, their formation under equilibrium conditions relies on additional components10,11,12 or specific engineering of interaction sites13,14, and is seldom quantitative10.
Generation of low-symmetry assemblies from a single precursor is even more challenging, because binding specificity must emerge in situ from initially identical components. Here we show an example of such a transformation, which selectively converts a single species into a bichromophoric heterodimer (Fig. 1). The process begins with initial covalent diversification, which consists of a non-reversible cleavage of the precursor followed by a formally reversible addition reaction. The addition is biased by subsequent self-assembly, which quantitatively produces a heterodimeric structure. The overall process can be described as a case of completive social self-sorting15,16 that exploits three distinct interaction types: reversible covalent addition, metal–ligand coordination, and dispersive forces.
Results and discussion
Formation and structure of 2
The above reaction was discovered during our work on the π-extended zinc(II) porphyrin 117, a hybrid system containing two types of pyrrole subunits: naphthalene-fused donors and naphthaleneimide-fused (NMI) acceptors18. We noticed that the compound underwent a gradual chemical transformation when stored in a toluene solution under ambient conditions. Single crystals of the product obtained by evaporation of the solvent were subjected to X-ray diffraction analysis, which revealed an unprecedented heterodimeric structure 2 (Fig. 2, Fig. 3). The structure of 2 consists of two non-equivalent subunits, A and B, each containing a zinc(II) center and a linear tetrapyrrole ligand formed by oxidative cleavage of a Cmeso–Cα bond. Interestingly, the two subunits are very different: in subunit B, the macrocycle was cleaved next to the acceptor unit and remained in the bilatrien-abc-one (BTO) form, which acts as an N4 ligand for zinc(II)19,20. The ligand is helical and provides a distorted square-planar environment for ZnII, with Zn—N distances of 1.973(8) to 2.008(9) Å. In subunit A, cleavage occurred next to the electron-rich pyrrole unit and was followed by addition of a water molecule, to produce a π-extended 15-hydroxybiladien-ab-one (HBDO), which provides a N3O coordination environment for Zn21. In particular, the OH group forms a somewhat elongated Zn—O bond (2.194(6) Å), and a hydrogen bond to the lactam terminus of the A unit (O···O, 2.53 Å). 15-Hydroxybiladien-ab-ones are formal hydration products of bilatrien-abc-ones and interconversion between these two species has been demonstrated for both free-base HBDOs22,23 and their ZnII complexes20. In the molecule of 2, the hydration status differs in subunits A and B, and is apparently correlated with the position of the cleavage. The two subunits are held together by a coordination bond between the lactam oxygen of unit B and the ZnII center of unit A. This bond, with a length of 2.002(8) Å, completes the distorted trigonal bipyramid environment around ZnII in A.
Subsequently, a stirred 3 mM solution of 1 in toluene-d8 was irradiated with a 4000 K consumer LED source and the progress of the reaction was monitored with 1H NMR spectroscopy. Remarkably, the formation of 2 was found to be effectively quantitative after 4 h, with no side-products or intermediates observable by NMR. The 1H NMR spectrum of 2 revealed a complex spectral pattern, which was analyzed using 2D correlation methods (Supplementary Fig. 8–14). In particular, 2 has eight non-equivalent diastereotopic isopropyl groups and eight non-equivalent tolyl groups, in line with the C1 molecular symmetry of the assembly. A narrow resonance at 14.34 ppm was identified as the hydrogen-bonded OH group of subunit A, whereas a broader NH peak of the pendant NMI pyrrole was found at 10.13 ppm. Characteristically, several signals of the aromatic naphthalene subunits have strongly upfield shifts in the ca. 3.7–5.4 ppm range, as a consequence of the combined shielding caused by neighboring tolyl substituents and the stacked π systems of the two subunits. A 1H DOSY spectrum recorded for a partly converted sample showed a decrease of the diffusion coefficient of 2 relative to that of 1, consistent with approximate doubling of the molecular weight (Supplementary Fig. 7). Mass spectrometric analyses revealed facile dissociation of 2 in ion sources. Specifically, a peak at m/z 1719.58 was found in a positive-ion MALDI spectrum, corresponding to [B + H]+ (Supplementary Fig. 22), whereas a peak at m/z 1735.53 was observed in a negative-mode ESI spectrum, which was identified as [A – H]− (Supplementary Fig. 23). The latter ionization mode is consistent with the presence of dissociable protons on the A subunit.
Analysis of reactivity
When a more dilute solution of 1 was irradiated (0.01 mM in toluene), a two-step transformation could be observed using absorption spectroscopy (Fig. 4). In the initial, faster step, occurring during the first 3 h of irradiation, the Soret band of 1 was observed to decrease in intensity, while a new set of absorptions appeared in the near infrared range (700 to 1100 nm). In the second step, which could be driven to completion after 12 h of irradiation, the band at ca. 982 nm decreased in intensity, without completely disappearing, whereas the absorption at ca. 833 nm increased. The vanishing of the Soret band is consistent with the loss of macrocyclic aromaticity caused by oxidative cleavage of 1. The NIR absorption at 982 nm may thus be linked to the initially formed BTO complexes, which are known to have markedly smaller electronic gaps than their parent metalloporphyrins24.
Subsequent evolution of NIR absorptions, leading to enhanced intensity at ca. 833 nm, is presumed to reflect hydration of the initially formed BTOs20,21,22,23. The resulting HBDO chromophore is characterized by a larger energy gap reflecting interrupted conjugation in the tetrapyrrole backbone. Since the equilibrated mixture displays both the 833 and 982 nm absorption bands, both chromophore types should be present in the final product. The conversion of 1 into 2 during the spectrophotometrically monitored irradiation is slower than in the corresponding NMR experiment, apparently because of the large difference in initial concentrations (0.01 mM vs. 3 mM, respectively). Water addition to BTOs could not be observed as a discrete step in the NMR experiment, indicating that it occurs faster than photocleavage under these conditions. Generally, relative rates of photocleavage and hydration may depend not only on the concentration of 1, but also on the amount of residual water in the toluene solvent, irradiation conditions, and stirring. The formation of 2 was however reproducible at both concentrations in several repetitions of the cleavage experiments.
Dimeric complexes of linear tetrapyrroles are normally formed by homodimerization of two chemically equivalent units21,25,26. Dimer 2 is unique for the dual non-equivalence of its components, which differ not only in the cleavage site but also in the hydration state of the ligand. Additionally, subunit A contains a chirality center at the meso carbon 15, whereas subunit B is helically chiral. The assembly occurs stereospecifically, with the R enantiomer of A being combined with the P enantiomer of B. The interplay between point and helical chirality in 2 resembles the chiral induction observed for some chiral alkoxybilinones27,28,29, except that in the present case, the selection does not involve an external chirality source.
Interestingly, while porphyrin 1 quantitatively produces the heterodimer 2, photooxidation of the corresponding zinc(II) tetra-NMI porphyrin18 under identical conditions produces a complex mixture of products, which could not be resolved using spectroscopic methods (Supplementary Fig. 16). The UV–vis–NIR spectrum of the latter mixture is consistent with the simultaneous presence of BTOs and HBDOs in comparable amounts. However, the low-field region of the 1H NMR spectrum contains several signals apparently corresponding to hydrogen-bonded OH groups of ZnII HBDOs. Such diversity is surprising, given that the symmetrical tetra-NMI precursor should give rise to just one BTO and one HBDO product, and may indicate formation of higher-order supramolecular assemblies. The selective formation of 2 is thus specific to the di-NMI porphyrin complex 1 and highlights the importance of an accurate geometric match between the components.
Computational analysis
Dispersion-corrected density functional theory (DFT) produced a geometry of 2 very similar to that found in the solid state (Supplementary Fig. 18). Frontier Kohn–Sham molecular orbitals (MOs) of 2 show significant localization on individual chromophores and can be correlated with MOs of the isolated subunits A and B (Fig. 5 and Supplementary Fig. 17). Mixing of frontier MOs is typically insignificant (Supplementary Table 2), with subunit A contributing primarily to H–2 (84%), HOMO (96%), and L + 2 (96%), and subunit B contributing to H–1 (97%), LUMO (97%), and L + 1 (96%). In fact, HOMO and H–1 levels of the dimer correspond to nearly pure HOMOs of subunits A and B, respectively, whereas LUMO, L + 1 and L + 2 of 2 are equivalent respectively to LUMO (B), L + 1 (B), and LUMO (A). In the dimer, the frontier MO levels of A are systematically shifted to higher energies relative to the free monomer, whereas an opposite effect is observed for B. The calculated electronic gap for the dimer is consequently very small (1.25 eV), but the HOMO–LUMO electronic transition is predicted by time-dependent DFT to be near forbidden (1492 nm, f = 0.02) and indeed, it was not observed experimentally. Each of the two predicted transitions at 940 and 900 nm consists of two excitations: H–1 to LUMO, corresponding the HOMO–LUMO transition of B, and HOMO to L + 1, which has a charge-transfer character. In contrast, the transition at 780 nm corresponds to a pure HOMO to L + 2 excitation, i.e., the HOMO–LUMO transition of free subunit A (for complete TD-DFT data, see Supplementary Fig. 19–21 and Supplementary Tables 3–5).
An analysis of non-covalent interactions performed for 2 using NCIPLOT430,31 (Fig. 6) revealed a large contact surface between subunits A and B. The interaction area covers the entire tetrapyrrolic cores of both subunits, large sections of the acenaphthylene units, as well as some dipp and Tol substituents. The very significant contortion of the contact surface increases its area, contributing to further enhancement of the dispersive interaction component. A similarly large overlap of π surfaces was recently reported in a structurally cognate NMI-fused azacoronene nanosandwich, which was found to be principally stabilized by dispersion forces32.
Density functional theory (DFT) simulations showed that the initial dioxygen-induced cleavage of 1 is highly exergonic, with ΔG298 of ca. −72 kcal/mol (Fig. 7), with the two regioisomeric cleavage products B and B’ having nearly identical energies. While the relative kinetics of formation of these two intermediates cannot be directly inferred from their relative energies, the small difference of ΔG values indicates that the different positioning of the remote imide groups with respect to the cleavage site has an only minor effect on the overall energetics of the BTO system. Oxidative cleavage of porphyrins is known to be controlled by steric accessibility of C–C bonds rather than by electronic effects33. The latter characteristic explains why compound 1, in spite of its mixed donor–acceptor structure, produces equal amounts of B and B’. Interestingly, water addition to B and B’, yielding respectively zinc(II) 15-hydroxybiladien-ab-ones A’ and A, is predicted to produce a very small change of ΔG298 of +1.16 and +1.32 kcal/mol respectively. These values imply that the hydration step should indeed be reversible20 and that there should be no intrinsic preference for either A or A’. If addition of water to B and B’ is indeed endergonic, as predicted by DFT, the driving force for hydration must be provided be the subsequent dimerization step, and the selectivity toward A should result from the preferred formation of one type of heterodimer.
To test this hypothesis, DFT structures of the four possible heterodimers, AB (=2), A’B, AB’, and A’B’, were optimized, starting with the XRD geometry of 2, in which the imide subunits were appropriately transposed (Fig. 7). In this way, the relative orientation of BTO (B/B’) and HBDO (A/A’) cores was approximately retained in all dimers. The native dimer AB yielded a large negative dimerization ΔG298 of –62.77 kcal/mol, lower by nearly 7 kcal/mol than the next most stable structure (A’B). Dimerization energies of these dimers reflect the combined effect of the Zn–O bond formation and dispersion interactions between the monomer π surfaces. The latter contribution was shown to be very large in a recently reported σ-dimer containing NMI-pyrrole subunits32. These data indicate that (a) the energetic effect of heterodimerization is sufficient to induce hydration of bilatrien-abc-ones and (b) the selection of the AB dimer may indeed be justified by its unique thermodynamic stability.
In the above analysis, the theoretical ΔG298 of dimerization is predicted to have a very large negative value, and is not expected to reflect the actual association energetics of 2. The computed ΔG estimate is affected by the combination of errors introduced by the DFT functional, basis set, empirical dispersion, PCM solvation, and thermochemistry calculations. In particular dispersion-related deviations may exceed 5 meV per non-H atom34,35, which may correspond to a dimerization energy error of over 25 kcal/mol for a system as large as 2. The cleavage and hydration steps, which do not involve large changes in dispersion interactions, should be affected by these inaccuracies to a much smaller extent. Since the errors discussed above are systematic, relative dimerization energies may be expected to be sufficiently reliable to support the preferred formation of the AB dimer relative to its isomers.
Dissociation and reconstitution of 2
To test if the dimer might be susceptible to dissociation in the presence of strong ligands, we treated a toluene-d8 solution of 2 with ca. 180 equiv of pyridine-d5. An equimolar mixture of two products was formed in a near stoichiometric amount, as observed using in-situ 1H NMR spectroscopy (Fig. 8, step a). By addition of a smaller amount of pyridine-d5 (Supplementary Fig. 15), it was possible to achieve partial conversion, with some 2 still present in the mixture. The two products and the remaining 2 showed no observable exchange in the ROESY spectrum, whereas DOSY data indicated that the new species have comparable molecular weights, smaller than the MW of 2. Each product featured a narrow 1H NMR resonance in the 12–14 ppm range, assignable to the hydrogen-bonded OH group of zinc(II) 15-hydroxybiladien-ab-one, and a broader signal at 9–11 ppm, corresponding to NH proton of the pendant pyrrole. The products could thus be identified as the isomeric monomers A(py)n and A’(py)n (n = 1 or 2, cf. Figure 7). The formation of A’ indicated that hydration of the intermediate B occurred immediately after cleavage of the dimer.
To reconstitute the AB dimer, it was necessary to remove not only pyridine-d5 but also the traces of dissolved water (Fig. 8, step b). After replacing the solvent with pure toluene-d8 and addition of powdered 4 Å molecular sieves, the mixture obtained contained predominantly two monomeric HBDO species, most likely A and A’, which were indeed accompanied by a small amount of reconstituted dimer. The sample was then heated at 90 °C to enhance the kinetics of dehydration (step c). This operation resulted in near-complete consumption of A and A’, which were partly converted back into AB. However, additional signals observed in the aromatic region of the 1H NMR spectrum indicated formation of other species, tentatively assigned the monomeric dehydration products B and B’. To validate this assumption, we removed the molecular sieves and replaced the solvent with non-dried toluene-d8. This step (d in Fig. 8) resulted in further reconstitution of the dimer and reappearance of the hydrated products A and A’, with the final AB:A:A’ molar ratio of ca. 1:0.5:0.5.
In the above sequence of experiments, the formation of 2 appears to be selective, i.e., no other heterodimers (A’B, AB’, or A’B’) are formed. However, the assembly process depends not only on thermodynamics of hydration and apical coordination, which are controlled by concentrations of water and pyridine, respectively, but also on relative dehydration and hydration kinetics for the A/B’ and A’/B pairs. AB forms spontaneously if A and B are simultaneously present in solution, and once formed, it is resistant to dehydration by molecular sieves. However, since dehydration performed in step c is apparently unselective, some A is converted into B’, leaving the corresponding amount of B without the dimerization partner. Likewise, during addition of water performed in step d, some A’ is produced in addition to A, depleting the amount of B available for heterodimerization. Such kinetic effects may explain incomplete reconstitution of the AB dimer. However, the selectivities observed in steps c and d may also be affected by the presence of residual pyridine-d5 which could potentially remain in the sample after step b.
Discussion
The completive self-sorting process described herein provides a glimpse of structural complexity that can be generated from donor–acceptor oligopyrroles by combining covalent reactivity with supramolecular interactions. The high-yielding formation of the heterodimer under photooxidation conditions is made possible by a favorable combination of thermodynamic and kinetic factors. Dispersion interactions provide the driving force for the self-assembly and are also responsible for the observed selectivity of hydration. The resulting heterodimer, derived from a single metalloporphyrin, contains two chromophores with different conjugation lengths, leading to a structure with partial donor–acceptor character and non-negligible interaction between the subunits. This feature implies prospective use of photochemical chromophore diversification for in-situ synthesis of supramolecular electron- and energy-transfer systems.
Methods
Materials
Toluene was dried using a commercial solvent purification system and all other solvents and reagents were used as received. Zinc(II) porphyrin 117 and its tetra-NMI analogue18 were synthesized as shown in the Supplementary Information. NMR spectral assignments were made using two-dimensional 1H and 13C NMR spectroscopy.
Irradiation experiments
A 5 mL flask containing zinc(II) porphyrin 1 (3 mg, 1.8 μmol) and toluene-d8 (0.6 mL) was rotated on a rotary evaporator (200 rpm, room temperature and ambient pressure) and irradiated using a 4000 K consumer LED source. After 4 h, the quantitative formation of heterodimer 2 was confirmed by NMR analyses. Zinc(II) tetra-NMI porphyrin was irradiated similarly.
The progress of the photocleavage was monitored spectrophotometrically using a Varian Cary 60 spectrophotometer. In a typical experiment, the zinc(II) porphyrin (3 mL of a 0.01 mM solution in toluene) was placed in a 10 mm path quartz cell equipped with a stir bar, and the spectra were recorded in air at room temperature. After the first spectrum was recorded, the sample was irradiated with the LED source for 12 h until no further change of the electronic spectrum was observed.
Heterodimer (2)
1H NMR (500 MHz, toluene-d8, 300 K): δ 14.34 (1H, s), 10.12 (1H, b), 9.06 (1H, b), 8.99 (1H, d3, J = 7.1 Hz), 8.57 (1H, b), 8.49 (1H, d3, J = 7.3 Hz), 8.31 (1H, m), 8.27 (1H, d3, J = 7.0 Hz), 8.19 (2H, d3, J = 7.1 Hz), 8.11 (2H, t3, J = 7.6 Hz), 7.73 (4H, b), 7.66 (2H, d3, J = 7.6 Hz), 7.60 (4H, d 3, J = 7.3 Hz), 7.53 (4H, m), 7.47 (8H, m), 7.31 (24H, m), 6.91 (4H, m), 6.85 (3H, m), 6.78 (3H, m), 6.56 (2H, d 3, J = 7.0 Hz), 6.49 (1H, d 3, J = 7.1 Hz), 6.44 (2H, b), 6.36 (1H, b), 6.29 (1H, m), 6.24 (1H, m), 5.30 (1H, d3, J = 7.3 Hz), 5.10 (1H, d3, J = 7.4 Hz), 5.05 (2H, m), 4.99 (1H, d3, J = 7.3 Hz), 4.94 (2H, m), 4.27 (1H, d3, J = 7.3 Hz), 3.87 (1H, d3, J = 7.3 Hz), 3.80 (1H, d3, J = 7.3 Hz), 3.35 (2H, m), 3.17 (3H, m), 2.88 (1H, m), 2.72 (2H, m), 2.45 (3H, s), 2.23 (3H, s), 2.19 (3H, s), 2.08 (3H, s), 1.94 (3H, s), 1.71 (3H, s), 1.66 (3H, d3, J = 6.6 Hz), 1.60 (9H, m), 1.53 (6H, m), 1.47 (6H, m), 1.39 (9H, m), 1.34 (3H, m), 1.21 (3H, m), 1.15 (3H, m), 1.10 (9H, m), 0.98 (3H, d3, J = 6.8 Hz). HRMS (ESI–TOF): m/z: [A–H]– Calcd for C116H83N6O7Zn: 1737.5669; Found 1737.5257, (MALDI–TOF): m/z: [B + H]+ Calcd for C116H82N6O6Zn: 1721.5720; Found 1721.5818.
Data availability
The data supporting the findings of this study are included within the Article and its Supplementary Information files. CCDC 2019726 contains the supplementary crystallographic data for this paper. Cartesian coordinates can be found in Supplementary Data 1.
References
Laskowski, R. A., Gerick, F. & Thornton, J. M. The structural basis of allosteric regulation in proteins. FEBS Lett. 583, 1692–1698 (2009).
Safont-Sempere, M. M., Fernández, G. & Würthner, F. Self-sorting phenomena in complex supramolecular systems. Chem. Rev. 111, 5784–5814 (2011).
He, Z., Jiang, W. & Schalley, C. A. Integrative self-sorting: a versatile strategy for the construction of complex supramolecular architecture. Chem. Soc. Rev. 44, 779–789 (2015).
Ajami, D. & Rebek, J. Expanded capsules with reversibly added spacers. J. Am. Chem. Soc. 128, 5314–5315 (2006).
Wang, F. et al. Self-sorting organization of two heteroditopic monomers to supramolecular alternating copolymers. J. Am. Chem. Soc. 130, 11254–11255 (2008).
Huang, Z. et al. Supramolecular polymerization promoted and controlled through self-sorting. Angew. Chem. Int. Ed. 53, 5351–5355 (2014).
Shigemitsu, H. et al. An adaptive supramolecular hydrogel comprising self-sorting double nanofibre networks. Nat. Nanotechnol. 13, 165–172 (2018).
Prinster, S. C., Hague, C. & Hall, R. A. Heterodimerization of g protein-coupled receptors: specificity and functional significance. Pharmacol. Rev. 57, 289–298 (2005).
Singh, S. S. & Jois, S. D. Chapter One - Homo- and Heterodimerization of Proteins in Cell Signaling: Inhibition and Drug Design. In Advances in Protein Chemistry and Structural Biology (ed. Donev, R.). 1111–59 (Academic Press, 2018).
Wu, G., Huang, Z. & Scherman, O. A. Quantitative supramolecular heterodimerization for efficient energy transfer. Angew. Chem. Int. Ed. 59, 15963–15967 (2020).
Thompson, N. A., Barbero, H. & Masson, E. Templating conformations with cucurbiturils. Chem. Commun. 55, 12160–12163 (2019).
Barbero, H., Thompson, N. A. & Masson, E. “Dual Layer” self-sorting with Cucurbiturils. J. Am. Chem. Soc. 142, 867–873 (2020).
Beckers, E. H. A. et al. Preferential hetero-dimer formation and equilibrium dynamics of self-complementary bifunctional oligo(p-phenylenevinylene) and C60 ureido-pyrimidinone derivatives in solution. Chem. Commun. 2888–2889, https://doi.org/10.1039/B208074E (2002).
Zhao, X. et al. Hydrazide-based quadruply hydrogen-bonded heterodimers. structure, assembling selectivity, and supramolecular substitution. J. Am. Chem. Soc. 125, 15128–15139 (2003).
Mahata, K. & Schmittel, M. From 2-fold completive to integrative self-sorting: a five-component supramolecular trapezoid. J. Am. Chem. Soc. 131, 16544–16554 (2009).
Saha, M. L. & Schmittel, M. Degree of molecular self-sorting in multicomponent systems. Org. Biomol. Chem. 10, 4651–4684 (2012).
Kumar, S. et al. Porphyrin–ryleneimide hybrids: tuning of visible and near-infrared absorption by chromophore desymmetrization. Org. Lett. 22, 7202–7207 (2020).
Zhylitskaya, H., Cybińska, J., Chmielewski, P., Lis, T. & Stępień, M. Bandgap engineering in π-extended pyrroles. a modular approach to electron-deficient chromophores with multi-redox activity. J. Am. Chem. Soc. 138, 11390–11398 (2016).
Koerner, R., Olmstead, M. M., Ozarowski, A. & Balch, A. L. A linear tetrapyrrole as a binucleating ligand with copper(II). coordination beyond the usual M−N4 bonding. Inorg. Chem. 38, 3262–3263 (1999).
Kita, K. et al. Thermochromic and solvatochromic zinc biladienones: dynamic equilibria of a metal complex having a flexible framework sensitive to environment. Tetrahedron Lett. 47, 1533–1536 (2006).
Shimizu, T., Asano, N., Mizutani, T., Chang, H.-C. & Kitagawa, S. Allosteric binding of amino alcohols and diamines by dimeric zinc biladienone. Tetrahedron Lett. 50, 536–539 (2009).
Asano, N., Uemura, S., Kinugawa, T., Akasaka, H. & Mizutani, T. Synthesis of biladienone and bilatrienone by coupled oxidation of tetraarylporphyrins†. J. Org. Chem. 72, 5320–5326 (2007).
Ongayi, O., Vicente, M. G. H., Ghosh, B., Fronczek, F. R. & Smith, K. M. Bilitrienones from the chemical oxidation of dodecasubstituted porphyrins. Tetrahedron 66, 63–67 (2010).
Ongayi, O. et al. Synthesis and electrochemistry of undeca-substituted metallo-benzoylbiliverdins. Inorg. Chem. 45, 1463–1470 (2006).
Balch, A. L., Latos-Grazynski, L., Noll, B. C., Olmstead, M. M. & Safari, N. Isolation and characterization of an iron biliverdin-type complex that is formed along with verdohemochrome during the coupled oxidation of iron(II) octaethylporphyrin. J. Am. Chem. Soc. 115, 9056–9061 (1993).
Balch, A. L., Mazzanti, M., Noll, B. C. & Olmstead, M. M. Coordination patterns for biliverdin-type ligands. helical and linked helical units in four-coordinate cobalt and five-coordinate manganese(III) complexes of octaethylbilindione. J. Am. Chem. Soc. 116, 9114–9122 (1994).
Mizutani, T., Yagi, S., Honmaru, A. & Ogoshi, H. Interconversion between point chirality and helical chirality driven by shape-sensitive interactions. J. Am. Chem. Soc. 118, 5318–5319 (1996).
Mizutani, T. et al. Helical chirality induction in zinc bilindiones by amino acid esters and amines. J. Org. Chem. 63, 8769–8784 (1998).
Mizutani, T. et al. Helical chirality induction by point chirality at helix terminal. J. Am. Chem. Soc. 121, 754–759 (1999).
Contreras-García, J. et al. NCIPLOT: a program for plotting noncovalent interaction regions. J. Chem. Theory Comput. 7, 625–632 (2011).
Boto, R. A. et al. NCIPLOT4: fast, robust, and quantitative analysis of noncovalent interactions. J. Chem. Theory Comput. 16, 4150–4158 (2020).
Moshniaha, L. et al. Aromatic nanosandwich obtained by σ-dimerization of a nanographenoid π-radical. J. Am. Chem. Soc. 142, 3626–3635 (2020).
Silva, A. M. S. et al. Photo-oxygenation of meso-tetraphenylporphyrin derivatives: the influence of the substitution pattern and characterization of the reaction products. J. Porphyr. Phthalocyanines 02, 45–51 (1998).
Grimme, S., Mück-Lichtenfeld, C. & Antony, J. Noncovalent Interactions between Graphene Sheets and in Multishell (Hyper)Fullerenes. J. Phys. Chem. C. 111, 11199–11207 (2007).
Grimme, S., Antony, J., Ehrlich, S. & Krieg, H. A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. J. Chem. Phys. 132, 154104 (2010).
Acknowledgements
Financial support from the Foundation for Polish Science (TEAM POIR.04.04.00-00-5BF1/17-00 to M.S.) is gratefully acknowledged. Quantum-chemical calculations were performed in the Wrocław Center for Networking and Supercomputing.
Author information
Authors and Affiliations
Contributions
M.S. conceptualized the project. S.K. performed all synthetic and spectroscopic experiments. Y.K.M. and M.S. performed DFT calculations. T.L. performed the X-ray diffraction analysis. The manuscript was written by M.S. with contributions from S.K. and Y.K.M.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Peer review
Peer review information
Nature Communications thanks the anonymous reviewer(s) for their contribution to the peer review of this work.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
About this article
Cite this article
Kumar, S., Maurya, Y.K., Lis, T. et al. Synthesis of a donor–acceptor heterodimer via trifunctional completive self-sorting. Nat Commun 13, 3204 (2022). https://doi.org/10.1038/s41467-022-30859-7
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/s41467-022-30859-7
This article is cited by
Comments
By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.