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Administration and detection of a multi-target rAAV gene doping vector in horses using multiple matrices and molecular techniques

Abstract

Gene doping, which includes the non-therapeutic use of genes or genetic elements that have the capacity to enhance athletic performance, is prohibited in horseracing and equestrian sports. To provide a comprehensive assessment of matrix and detection techniques, a custom adeno-associated virus serotype 8 vector was designed to include PCR binding sites for multiple target genes and assay types. The vector was injected via an intramuscular route into two Thoroughbred horses and matrices collected at defined timepoints. DNA was analysed using 3 detection methods: qPCR, digital PCR, and NGS. Overall, there was a strong correlation across the different detection methods employed, although digital PCR was less sensitive at lower concentrations. High concentrations of vector were detected at early timepoints in plasma and whole blood, which rapidly dropped after 0.5 d to trace levels by 4 d and 9 d post-administration respectively, following a similar pattern to previous studies. Vector was detected in dried blood spots at lower levels than whole blood, but with a similar detection time. Detection in hair root bulbs in one horse was observed at over a month post-administration, which opens new avenues for future gene doping testing in humans and animals.

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Fig. 1: Amplification of target from DNA extracted from plasma of two horses.
Fig. 2: qPCR, NGS, and dPCR comparison by assay and time for detection of rAAV8-CV in hair root bulbs for horse H1.
Fig. 3: Mean altered reference sequence motif hits in plasma samples at defined timepoints (hr) from duplicate reactions for the full rAAV-CV8 target pool of 20 NGS assays multiplexed into one reaction.
Fig. 4: Robustness assessment of matrices and molecular techniques based on different criteria for assay and replicate amplification, showing detection time in hours.
Fig. 5: rAAV8-CV post-administration detection time comparison.

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Data availability

Sequence information, computer code and resources are available by permission from the British Horseracing Authority under an appropriate materials transfer agreement.

References

  1. Kattenhorn LM, Tipper CH, Stoica L, Geraghty DS, Wright TL, Clark KR, et al. Adeno-Associated Virus Gene Therapy for Liver Disease. Hum Gene Ther. 2016;27:947.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Kovac M, Litvin YA, Aliev RO, Zakirova EY, Rutland CS, Kiyasov AP, et al. Gene Therapy Using Plasmid DNA Encoding VEGF164 and FGF2 Genes: A Novel Treatment of Naturally Occurring Tendinitis and Desmitis in Horses. Front Pharm. 2018;9:978.

    Article  Google Scholar 

  3. Pozzi D, Caracciolo G. Looking Back, Moving Forward: Lipid Nanoparticles as a Promising Frontier in Gene Delivery. ACS Pharm Transl Sci. 2023;6:1561–73.

    Article  CAS  Google Scholar 

  4. Prohibited Substances | FEI. 2023. https://inside.fei.org/fei/cleansport/humans/prohibited-list. Accessed 22 Dec 2023.

  5. International Federation of Horseracing Authorities. 2020. https://www.ifhaonline.org/default.asp?section=IABRWTest&area=2#article6b. Accessed 22 Dec 2023.

  6. Naumann N, Paßreiter A, Thomas A, Krug O, Walpurgis K, Thevis M. Analysis of Potential Gene Doping Preparations for Transgenic DNA in the Context of Sports Drug Testing Programs. Int J Mol Sci. 2023;24:15835.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Ni W, Le Guiner C, Gernoux G, Penaud-Budloo M, Moullier P, Snyder RO. Longevity of rAAV vector and plasmid DNA in blood after intramuscular injection in nonhuman primates: implications for gene doping. Gene Ther. 2011;18:709–18.

    Article  CAS  PubMed  Google Scholar 

  8. Cheung HW, Wong K, Lin VYC, Farrington AF, Bond AJ, Wan TSM, et al. Optimization and implementation of four duplex quantitative polymerase chain reaction assays for gene doping control in horseracing. Drug Test Anal. 2022;14:1587–98.

    Article  CAS  PubMed  Google Scholar 

  9. Garton FC, Houweling PJ, Vukcevic D, Meehan LR, Lee FXZ, Lek M, et al. The Effect of ACTN3 Gene Doping on Skeletal Muscle Performance. Am J Hum Genet. 2018;102:845–57.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Tozaki T, Hamilton NA. Control of gene doping in human and horse sports. Gene Ther. 2022;29:107–12.

    Article  CAS  PubMed  Google Scholar 

  11. Li R, Su P, Shi Y, Shi H, Ding S, Su X et al. Gene doping detection in the era of genomics. Drug Test Anal. 2024. https://doi.org/10.1002/dta.3664.

  12. Baoutina A, Coldham T, Bains GS, Emslie KR. Gene doping detection: evaluation of approach for direct detection of gene transfer using erythropoietin as a model system. Gene Ther. 2010;17:1022–32.

    Article  CAS  PubMed  Google Scholar 

  13. Tozaki T, Gamo S, Takasu M, Kikuchi M, Kakoi H, Hirota K, et al. Digital PCR detection of plasmid DNA administered to the skeletal muscle of a microminipig: a model case study for gene doping detection. BMC Res Notes. 2018;11:708.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Tozaki T, Ohnuma A, Kikuchi M, Ishige T, Kakoi H, Hirota K, et al. Microfluidic Quantitative PCR Detection of 12 Transgenes from Horse Plasma for Gene Doping Control. Genes. 2020;11:457.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Jiang Z, Haughan J, Moss KL, Stefanovski D, Ortved KF, Robinson MA. A quantitative PCR screening method for adeno‐associated viral vector 2‐mediated gene doping. Drug Test Anal. 2022;14:963–72.

    Article  CAS  PubMed  Google Scholar 

  16. Cheung HW, Wong KS, Lin VYC, Wan TSM, Ho ENM. A duplex qPCR assay for human erythropoietin (EPO) transgene to control gene doping in horses. Drug Test Anal. 2021;13:113–21.

    Article  CAS  PubMed  Google Scholar 

  17. Maniego J, Pesko B, Hincks P, Taylor P, Stewart G, Proudman C, et al. Direct sequence confirmation of qPCR products for gene doping assay validation in horses. Drug Test Anal. 2022;14:1017–25.

    Article  CAS  PubMed  Google Scholar 

  18. Baoutina A, Bhat S, Li DK, Emslie KR. Towards a robust test to detect gene doping for anabolic enhancement in human athletes. Drug Test Anal. 2023;15:314–23.

    Article  CAS  PubMed  Google Scholar 

  19. de Boer EN, van der Wouden PE, Johansson LF, van Diemen CC, Haisma HJ. A next-generation sequencing method for gene doping detection that distinguishes low levels of plasmid DNA against a background of genomic DNA. Gene Ther. 2019;26:338–46.

    Article  PubMed  PubMed Central  Google Scholar 

  20. Maniego J, Pesko B, Habershon-Butcher J, Huggett J, Taylor P, Scarth J, et al. Screening for gene doping transgenes in horses via the use of massively parallel sequencing. Gene Ther. 2022;29:236–46.

    Article  CAS  PubMed  Google Scholar 

  21. Tozaki T, Ohnuma A, Takasu M, Kikuchi M, Kakoi H, Hirota K, et al. Droplet Digital PCR Detection of the Erythropoietin Transgene from Horse Plasma and Urine for Gene-Doping Control. Genes. 2019;10:243.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Ohnuma A, Tozaki T, Kikuchi M, Ishige T, Kakoi H, Hirota K, et al. Multiplex Detection of Transgenes Using πCode Technology for Gene Doping Control. Anal Chem. 2023;95:10149–54.

    Article  CAS  PubMed  Google Scholar 

  23. Yuen BP-N, Wong K-S, So Y-M, Kwok WH, Cheung HW, Wan TSM, et al. Gene Doping Control Analysis of Human Erythropoietin Transgene in Equine Plasma by PCR-Liquid Chromatography High-Resolution Tandem Mass Spectrometry. Anal Chem. 2024;96:5307–14.

    Article  CAS  PubMed  Google Scholar 

  24. Marchand A, Roulland I, Semence F, Ericsson M. EPO transgene detection in dried blood spots for antidoping application. Drug Test Anal. 2021;13:1888–96.

    Article  CAS  PubMed  Google Scholar 

  25. Laboratory Guidelines - Gene Doping Detection based on Polymerase Chain Reaction (PCR) | World Anti Doping Agency. 2021. https://www.wada-ama.org/en/resources/laboratory-guidelines-gene-doping-detection-based-polymerase-chain-reaction-pcr. Accessed 22 Dec 2023.

  26. Sugasawa T, Aoki K, Yanazawa K, Takekoshi K. Detection of Multiple Transgene Fragments in a Mouse Model of Gene Doping Based on Plasmid Vector Using TaqMan-qPCR Assay. Genes. 2020;11:750.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Haughan J, Jiang Z, Stefanovski D, Moss KL, Ortved KF, Robinson MA. Detection of intra‐articular gene therapy in horses using quantitative real time PCR in synovial fluid and plasma. Drug Test Anal. 2020;12:743–51.

    Article  CAS  PubMed  Google Scholar 

  28. Baoutina A, Bhat S, Zheng M, Partis L, Dobeson M, Alexander IE, et al. Synthetic certified DNA reference material for analysis of human erythropoietin transgene and transcript in gene doping and gene therapy. Gene Ther. 2016;23:708–17.

    Article  CAS  PubMed  Google Scholar 

  29. Tozaki T, Ohnuma A, Kikuchi M, Ishige T, Kakoi H, Hirota KI, et al. Design and storage stability of reference materials for microfluidic quantitative PCR-based equine gene doping tests. J Equine Sci. 2021;32:125.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  30. Prescott MJ, Lidster K. Improving quality of science through better animal welfare: the NC3Rs strategy. Lab Anim. 2017;46:152–6.

    Article  Google Scholar 

  31. Schröder W, Klostermann A, Distl O. Candidate genes for physical performance in the horse. Vet J. 2011;190:39–48.

    Article  PubMed  Google Scholar 

  32. Ahmetov II, Egorova ES, Gabdrakhmanova LJ, Fedotovskaya ON. Genes and Athletic Performance: An Update. Med Sport Sci. 2016;61:41–54.

  33. Wilkin T, Baoutina A, Hamilton N. Equine performance genes and the future of doping in horseracing. Drug Test Anal. 2017;9:1456–71.

    Article  CAS  PubMed  Google Scholar 

  34. Howe KL, Achuthan P, Allen J, Allen J, Alvarez-Jarreta J, Ridwan Amode M, et al. Ensembl 2021. Nucleic Acids Res. 2021;49:D884–91.

    Article  CAS  PubMed  Google Scholar 

  35. Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, et al. Primer3—new capabilities and interfaces. Nucleic Acids Res. 2012;40:e115.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  36. Dong JY, Fan PD, Frizzell RA. Quantitative Analysis of the Packaging Capacity of Recombinant Adeno-Associated Virus. Hum Gene Ther. 1996;7:2101–12.

  37. Kalbfleisch TS, Rice ES, DePriest MS, Walenz BP, Hestand MS, Vermeesch JR, et al. Improved reference genome for the domestic horse increases assembly contiguity and composition. Commun Biol. 2018;1:197.

    Article  PubMed  PubMed Central  Google Scholar 

  38. Taylor SC, Nadeau K, Abbasi M, Lachance C, Nguyen M, Fenrich J. The Ultimate qPCR Experiment: Producing Publication Quality, Reproducible Data the First Time. Trends Biotechnol. 2019;37:761–74.

    Article  CAS  PubMed  Google Scholar 

  39. Ma H, Bell KN, Loker RN. qPCR and qRT-PCR analysis: Regulatory points to consider when conducting biodistribution and vector shedding studies. Mol Ther Methods Clin Dev. 2021;20:152.

    Article  PubMed  Google Scholar 

  40. la Marca G, Malvagia S, Filippi L, Luceri F, Moneti G, Guerrini R. A new rapid micromethod for the assay of phenobarbital from dried blood spots by LC-tandem mass spectrometry. Epilepsia. 2009;50:2658–62.

    Article  PubMed  Google Scholar 

  41. Sanmiguel J, Gao G, Vandenberghe LH. Quantitative and Digital Droplet-Based AAV Genome Titration. Methods Mol Biol. 2019;1950:51.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. Quail MA, Swerdlow H, Turner DJ, Swerdlow H. Improved protocols for the illumina genome analyzer sequencing system. Curr Protoc Hum Genet. 2009; Chapter 18: Unit 18.2.

  43. Wilkin T, Hamilton NA, Cawley AT, Bhat S, Baoutina A. PCR-Based Equine Gene Doping Test for the Australian Horseracing Industry. Int J Mol Sci. 2024;25:2570.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  44. Wong K, Cheung HW, Szeto CWL, Tsang CYN, Wan TSM, Ho ENM. A multiplex qPCR assay for transgenes detection: A novel approach for gene doping control in horseracing using conventional laboratory setup. Drug Test Anal. 2023;15:879–88.

    Article  CAS  PubMed  Google Scholar 

  45. Whale AS, Huggett JF, Tzonev S. Fundamentals of multiplexing with digital PCR. Biomol Detect Quantif. 2016;10:15–23.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  46. Kumar A, Mhatre S, Godbole S, Jha P, Dikshit R. Optimization of extraction of genomic DNA from archived dried blood spot (DBS): potential application in epidemiological research & bio banking. Gates Open Res. 2019;2:57.

    Article  PubMed  PubMed Central  Google Scholar 

  47. Hengge UR, Mirmohammadsadegh A. Adeno-associated virus expresses transgenes in hair follicles and epidermis. Mol Ther. 2000;2:188–94.

    Article  CAS  PubMed  Google Scholar 

  48. Shen S, Bryant KD, Sun J, Brown SM, Troupes A, Pulicherla N, et al. Glycan Binding Avidity Determines the Systemic Fate of Adeno-Associated Virus Type 9. J Virol. 2012;86:10408.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  49. Vandamme C, Adjali O, Mingozzi F. Unraveling the Complex Story of Immune Responses to AAV Vectors Trial After Trial. Hum Gene Ther. 2017;28:1061.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgements

The British Horseracing Authority for funding the analytical work carried out for this study. Staff and students at the Centre for Racehorse Studies (CRS), UK, are also acknowledged for their care and sampling of the horses involved in this work.

Funding

This work was funded by the British Horseracing Authority (BHA).

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Authors

Contributions

ER and PH conceived and secured funding for the study. Experimental data was generated and analysed by JM, CH, and ER. JH-B performed the administration of the rAAV8-CV vector and was responsible for the veterinary health of the animals during the study. All authors were involved in the writing and editing of the manuscript.

Corresponding author

Correspondence to Edward Ryder.

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Competing interests

Sport and Specialised Analytical Services, LGC Assure, have a commercial interest in developing tests based on gene doping detection.

Ethical approval

Ethical approval was obtained for this study from the BHA Ethics Board. The care and use of all animals in this study were in accordance with the UK Home Office regulations, UK Animals (Scientific Procedures) Act of 1986.

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Maniego, J., Harding, C., Habershon-Butcher, J. et al. Administration and detection of a multi-target rAAV gene doping vector in horses using multiple matrices and molecular techniques. Gene Ther 31, 477–488 (2024). https://doi.org/10.1038/s41434-024-00462-0

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