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| Open AccessA strategy for differential abundance analysis of sparse microbiome data with group-wise structured zeros
- Fentaw Abegaz
- , Davar Abedini
- & Age K. Smilde
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| Open AccessMolecular and serological diagnosis of multiple bacterial zoonoses in febrile outpatients in Garissa County, north-eastern Kenya
- Martin Wainaina
- , Johanna F. Lindahl
- & Sascha Al Dahouk
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| Open AccessA novel combinatorial approach using sulforaphane- and withaferin A-rich extracts for prevention of estrogen receptor-negative breast cancer through epigenetic and gut microbial mechanisms
- Mohammad Mijanur Rahman
- , Huixin Wu
- & Trygve O. Tollefsbol
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| Open AccessGut microbiota promoting propionic acid production accompanies caloric restriction-induced intentional weight loss in cats
- J. C. Rowe
- , J. A. Winston
- & A. J. Rudinsky
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| Open AccessHost factors are associated with vaginal microbiome structure in pregnancy in the ECHO Cohort Consortium
- Kimberly McKee
- , Christine M. Bassis
- & Lynne M. Smith
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| Open AccessGenomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France
- Núria Ferrer-Bustins
- , Claire Yvon
- & Anna Jofré
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| Open AccessLeveraging existing 16S rRNA gene surveys to decipher microbial signatures and dysbiosis in cervical carcinogenesis
- Xiaoxiao Li
- , Fenfen Xiang
- & Rong Wu
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| Open AccessEffects of Eimeria acervulina infection on the luminal and mucosal microbiota of the cecum and ileum in broiler chickens
- Philip M. Campos
- , Katarzyna B. Miska
- & Monika Proszkowiec-Weglarz
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| Open AccessCharacterizing the blood microbiota in healthy and febrile domestic cats via 16s rRNA sequencing
- Liam Kitson
- , Anne A. M. J. Becker
- & Ananda Muller
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| Open AccessIncidence of resistance to ALS and ACCase inhibitors in Echinochloa species and soil microbial composition in Northern Italy
- Carlo Maria Cusaro
- , Enrica Capelli
- & Maura Brusoni
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| Open AccessMetagenomic evaluation of peanut rhizosphere microbiome from the farms of Saurashtra regions of Gujarat, India
- Krunal R. Hirpara
- , Ankit T. Hinsu
- & Ramesh K. Kothari
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| Open AccessCommunity dynamics and metagenomic analyses reveal Bacteroidota's role in widespread enzymatic Fucus vesiculosus cell wall degradation
- Jascha F. H. Macdonald
- , Pablo Pérez-García
- & Wolfgang R. Streit
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| Open AccessGenome plasticity shapes the ecology and evolution of Phocaeicola dorei and Phocaeicola vulgatus
- Emilene Da Silva Morais
- , Ghjuvan Micaelu Grimaud
- & Paul Ross
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| Open AccessHelicobacter pylori infection in infant rhesus macaque monkeys is associated with an altered lung and oral microbiome
- Noah A. Siegel
- , Monica T. Jimenez
- & Lisa A. Miller
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| Open AccessA non-invasive tool to collect small intestine content in post weaning pigs: validation study
- Inés García Viñado
- , Federico Correa
- & Catherine Ollagnier
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| Open AccessDroplet based whole genome amplification for sequencing minute amounts of purified Mycobacterium tuberculosis DNA
- Anzaan Dippenaar
- , Nabila Ismail
- & Robin M. Warren
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| Open AccessVariability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols
- Samuel P. Forry
- , Stephanie L. Servetas
- & Scott A. Jackson
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| Open AccessOral microbial signatures associated with age and frailty in Canadian adults
- Vanessa DeClercq
- , Robyn J. Wright
- & Morgan G. I. Langille
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| Open AccessEffects of microbiome-based interventions on neurodegenerative diseases: a systematic review and meta-analysis
- Zara Siu Wa Chui
- , Lily Man Lee Chan
- & Jojo Yan Yan Kwok
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| Open AccessA longitudinal study of queen health in honey bees reveals tissue specific response to seasonal changes and pathogen pressure
- Duan C. Copeland
- , Vincent A. Ricigliano
- & Kirk E. Anderson
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| Open AccessPotential routes of plastics biotransformation involving novel plastizymes revealed by global multi-omic analysis of plastic associated microbes
- Rodney S. Ridley Jr
- , Roth E. Conrad
- & Konstantinos T. Konstantinidis
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| Open AccessAerobic vaginitis is associated with carbonic anhydrase IX in cervical intraepithelial neoplasia
- Švitrigailė Grincevičienė
- , Daiva Vaitkienė
- & Jurgita Matulienė
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| Open AccessComparison of DNA extraction methods on different sample matrices within the same terrestrial ecosystem
- Giulio Galla
- , Nadine Praeg
- & Heidi C. Hauffe
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| Open AccessDifferential responses of rumen and fecal fermentation and microbiota of Liaoning cashmere goats after 2-hydroxy-4-(methylthio) butanoic acid isopropyl ester supplementation
- Zhiqiang Zhong
- , Peiyuan Sun
- & Ruiyang Zhang
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| Open AccessGut-associated microbes are present and active in the pig nasal cavity
- Pau Obregon-Gutierrez
- , Laura Bonillo-Lopez
- & Virginia Aragon
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| Open AccessBiomarker profiling to determine clinical impact of microRNAs in cognitive disorders
- Weijie Zhai
- , Meng Zhao
- & Li Sun
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| Open AccessRelationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions
- Maria Bernard
- , Alexandre Lecoeur
- & Tatiana Zerjal
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| Open AccessDimension reduction of microbiome data linked Bifidobacterium and Prevotella to allergic rhinitis
- Shohei Komaki
- , Yukari Sahoyama
- & Eiryo Kawakami
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| Open AccessFeeding Drosophila gut microbiomes from young and old flies modifies the microbiome
- Jonas Bruhn Wesseltoft
- , Christian Dupont Danielsen
- & Torsten Nygaard Kristensen
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| Open AccessResponse of the metabolic activity and taxonomic composition of bacterial communities to mosaically varying soil salinity and alkalinity
- Márton Mucsi
- , Andrea K. Borsodi
- & Tibor Szili-Kovács
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| Open AccessGut microbiota profile in CDKL5 deficiency disorder patients
- Elisa Borghi
- , Ornella Xynomilakis
- & Aglaia Vignoli
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| Open AccessEffects of different temperatures on Leiocassis longirostris gill structure and intestinal microbial composition
- Zhongmeng Zhao
- , Han Zhao
- & Qiang Li
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| Open AccessAntimicrobial resistance burden pre and post-COVID-19 pandemic with mapping the multidrug resistance in Egypt: a comparative cross-sectional study
- Shaimaa Abdelaziz Abdelmoneim
- , Ramy Mohamed Ghazy
- & Mohamed Anwar Mahgoub
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| Open AccessFungal and bacterial species richness in biodeteriorated seventeenth century Venetian manuscripts
- Maria Stratigaki
- , Andrea Armirotti
- & Arianna Traviglia
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| Open AccessDiet replacement with whole insect larvae affects intestinal morphology and microbiota of broiler chickens
- Stylianos Vasilopoulos
- , Ilias Giannenas
- & Paschalis Fortomaris
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| Open AccessAlbendazole metabolites excretion in human saliva as a biomarker to assess treatment compliance in mass drug administration (MDA) anthelmintic programs
- E. Nieves
- , R. Cimino
- & L. Ceballos
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| Open AccessMetagenomic insights into the wastewater resistome before and after purification at large‑scale wastewater treatment plants in the Moscow city
- Shahjahon Begmatov
- , Alexey V. Beletsky
- & Nikolai V. Ravin
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| Open AccessImpact of rumen microbiome on cattle carcass traits
- Yoshiaki Sato
- , Ruki Sato
- & Fumiaki Yoshizawa
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| Open AccessPreliminary characterization of gut mycobiome enterotypes reveals the correlation trends between host metabolic parameter and diet: a case study in the Thai Cohort
- Kevin Mok
- , Thitirat Poolsawat
- & Massalin Nakphaichit
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| Open AccessStudy of the intestinal microbiota composition and the effect of treatment with intensive chemotherapy in patients recovered from acute leukemia
- Xenia Vázquez
- , Pilar Lumbreras-Iglesias
- & Carlos Sabater
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| Open AccessStudy of the influence of tributyrin-supplemented diets on the gut bacterial communities of rainbow trout (Oncorhynchus mykiss)
- A. Louvado
- , F. J. R. C. Coelho
- & N. C. M. Gomes
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| Open AccessFecal microbiota impacts development of Cryptosporidium parvum in the mouse
- Giovanni Widmer
- & Hannah N. Creasey
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| Open AccessIdentification of the bacterial community that degrades phenanthrene sorbed to polystyrene nanoplastics using DNA-based stable isotope probing
- Stephen Summers
- , Mohammad Sufian Bin-Hudari
- & Tony Gutierrez
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| Open AccessAssessing the impact of three feeding stages on rumen bacterial community and physiological characteristics of Japanese Black cattle
- Huseong Lee
- , Minji Kim
- & Sanggun Roh
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| Open AccessSynergistic activity of Limosilactobacillus reuteri KUB-AC5 and water-based plants against Salmonella challenge in a human in vitro gut model
- Kevin Mok
- , Orranich Honwichit
- & Massalin Nakphaichit
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| Open AccessDifferences in gut microbiota between Dutch and South-Asian Surinamese: potential implications for type 2 diabetes mellitus
- Eric I. Nayman
- , Brooke A. Schwartz
- & Kalai Mathee
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| Open AccessThe potato rhizosphere microbiota correlated to the yield of three different regions in Korea
- Gye-Ryeong Bak
- , Kiseok Keith Lee
- & Yong-Hwan Lee
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| Open AccessSurvival of a microbial inoculant in soil after recurrent inoculations
- M. Papin
- , L. Philippot
- & A. Spor
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| Open AccessCultivable fungal diversity in two karstic caves in Italy: under-investigated habitats as source of putative novel taxa
- A. Poli
- , A. Zanellati
- & G. C. Varese