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| Open AccessA computational spatial whole-Cell model for hepatitis B viral infection and drug interactions
- Zhaleh Ghaemi
- , Oluwadara Nafiu
- & Jianming Hu
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| Open AccessForecasting local hospital bed demand for COVID-19 using on-request simulations
- Raisa Kociurzynski
- , Angelo D’Ambrosio
- & Tjibbe Donker
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| Open AccessThe diffusion metrics of African swine fever in wild boar
- Hartmut H. K. Lentz
- , Hannes Bergmann
- & Carola Sauter-Louis
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| Open AccessIntegrating glycolysis, citric acid cycle, pentose phosphate pathway, and fatty acid beta-oxidation into a single computational model
- Sylwester M. Kloska
- , Krzysztof Pałczyński
- & Tadeusz A. Wysocki
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| Open AccessSurvival analysis of a stochastic impulsive single-species population model with migration driven by environmental toxicant
- Xiangjun Dai
- , Jianjun Jiao
- & Qi Quan
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| Open AccessWhole farm planning raises profit despite burgeoning climate crisis
- Albert Muleke
- , Matthew Tom Harrison
- & Yunbo Zhang
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| Open AccessEffects of solar irradiance noise on a complex marine trophic web
- Roberto Grimaudo
- , Paolo Lazzari
- & Davide Valenti
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| Open AccessMisperception influence on zero-determinant strategies in iterated Prisoner’s Dilemma
- Zhaoyang Cheng
- , Guanpu Chen
- & Yiguang Hong
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| Open AccessQueueing theory model of pentose phosphate pathway
- Sylwester M. Kloska
- , Krzysztof Pałczyński
- & Tadeusz A. Wysocki
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| Open AccessPublic communication can facilitate low-risk coordination under surveillance
- Amos Korman
- & Pierluigi Crescenzi
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| Open AccessA stochastic oscillator model simulates the entrainment of vertebrate cellular clocks by light
- Vojtěch Kumpošt
- , Daniela Vallone
- & Lennart Hilbert
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| Open AccessTheoretical investigation of pre-symptomatic SARS-CoV-2 person-to-person transmission in households
- Yehuda Arav
- , Ziv Klausner
- & Eyal Fattal
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| Open AccessBiPSim: a flexible and generic stochastic simulator for polymerization processes
- Stephan Fischer
- , Marc Dinh
- & Vincent Fromion
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| Open AccessInfluence of survival, promotion, and growth on pattern formation in zebrafish skin
- Christopher Konow
- , Ziyao Li
- & Irving R. Epstein
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| Open AccessModeling poliovirus replication dynamics from live time-lapse single-cell imaging data
- Ashley I. Teufel
- , Wu Liu
- & Claus O. Wilke
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| Open AccessAchieving herd immunity against COVID-19 at the country level by the exit strategy of a phased lift of control
- Sake J. de Vlas
- & Luc E. Coffeng
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| Open AccessA quantitative model of cellular decision making in direct neuronal reprogramming
- Adriaan Merlevede
- , Emilie M. Legault
- & Victor Olariu
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| Open AccessIntegrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission
- Ivy K. Kombe
- , Charles N. Agoti
- & Graham F. Medley
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| Open AccessEmergence of disconnected clusters in heterogeneous complex systems
- István A. Kovács
- & Róbert Juhász
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| Open AccessGenerating synthetic aging trajectories with a weighted network model using cross-sectional data
- Spencer Farrell
- , Arnold Mitnitski
- & Andrew Rutenberg
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| Open AccessTheoretical study of the impact of adaptation on cell-fate heterogeneity and fractional killing
- Julien Hurbain
- , Darka Labavić
- & Benjamin Pfeuty
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| Open AccessIdentifying a stochastic clock network with light entrainment for single cells of Neurospora crassa
- C. Caranica
- , A. Al-Omari
- & J. Arnold
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Article
| Open AccessStochastic master equation for early protein aggregation in the transthyretin amyloid disease
- Ruo-Nan Liu
- & Yan-Mei Kang
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| Open AccessFluctuation relations and fitness landscapes of growing cell populations
- Arthur Genthon
- & David Lacoste
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| Open AccessEnhancement of gene expression noise from transcription factor binding to genomic decoy sites
- Supravat Dey
- , Mohammad Soltani
- & Abhyudai Singh
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| Open AccessFrailness and resilience of gene networks predicted by detection of co-occurring mutations via a stochastic perturbative approach
- Matteo Bersanelli
- , Ettore Mosca
- & Gastone Castellani
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| Open AccessPrediction of leukocyte counts during paediatric acute lymphoblastic leukaemia maintenance therapy
- Santeri Karppinen
- , Olli Lohi
- & Matti Vihola
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| Open AccessIntrinsic and extrinsic noise of gene expression in lineage trees
- Philipp Thomas
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| Open AccessDemographic stochasticity drives epidemiological patterns in wildlife with implications for diseases and population management
- Sébastien Lambert
- , Pauline Ezanno
- & Emmanuelle Gilot-Fromont
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| Open AccessThe indispensable contribution of s38 protein to ovarian-eggshell morphogenesis in Drosophila melanogaster
- Athanassios D. Velentzas
- , Panagiotis D. Velentzas
- & Dimitrios J. Stravopodis
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| Open AccessPersonalized Integrated Network Modeling of the Cancer Proteome Atlas
- Min Jin Ha
- , Sayantan Banerjee
- & Veerabhadran Baladandayuthapani
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| Open AccessLivestock trade network: potential for disease transmission and implications for risk-based surveillance on the island of Mayotte
- Younjung Kim
- , Laure Dommergues
- & Raphaëlle Métras
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| Open AccessAMPA receptor trafficking and its role in heterosynaptic plasticity
- G. Antunes
- & F. M. Simoes-de-Souza
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| Open AccessA Markovian Approach towards Bacterial Size Control and Homeostasis in Anomalous Growth Processes
- Yanyan Chen
- , Rosa Baños
- & Javier Buceta
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| Open AccessRule-based modelling provides an extendable framework for comparing candidate mechanisms underpinning clathrin polymerisation
- Anatoly Sorokin
- , Katharina F. Heil
- & Oksana Sorokina
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| Open AccessNoise-induced bistability in the fate of cancer phenotypic quasispecies: a bit-strings approach
- Josep Sardanyés
- & Tomás Alarcón
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| Open AccessMultiple Cryptic Binding Sites are Necessary for Robust Fibronectin Assembly: An In Silico Study
- Christopher A. Lemmon
- & Seth H. Weinberg
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| Open AccessStochastic fluctuations can reveal the feedback signs of gene regulatory networks at the single-molecule level
- Chen Jia
- , Peng Xie
- & Michael Q. Zhang
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| Open AccessPotential landscape of high dimensional nonlinear stochastic dynamics with large noise
- Ying Tang
- , Ruoshi Yuan
- & Ping Ao
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| Open AccessHost genotype and time dependent antigen presentation of viral peptides: predictions from theory
- R. Charlotte Eccleston
- , Peter V. Coveney
- & Neil Dalchau
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| Open AccessA new standard model for milk yield in dairy cows based on udder physiology at the milking-session level
- Patrick Gasqui
- & Jean-Marie Trommenschlager
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| Open AccessModelling the evolution of transcription factor binding preferences in complex eukaryotes
- Antonio Rosanova
- , Alberto Colliva
- & Michele Caselle
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| Open AccessAssessment of China’s H5N1 routine vaccination strategy
- Zhen Sun
- , Jimin Wang
- & Zeying Huang
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| Open AccessNoise-processing by signaling networks
- Styliani Kontogeorgaki
- , Rubén J. Sánchez-García
- & Ben D. MacArthur
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| Open AccessDisease dynamics in a stochastic network game: a little empathy goes a long way in averting outbreaks
- Ceyhun Eksin
- , Jeff S. Shamma
- & Joshua S. Weitz
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| Open AccessRegulation of RNA-binding proteins affinity to export receptors enables the nuclear basket proteins to distinguish and retain aberrant mRNAs
- M. Soheilypour
- & M. R. K. Mofrad
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| Open AccessTargeted Downregulation of s36 Protein Unearths its Cardinal Role in Chorion Biogenesis and Architecture during Drosophila melanogaster Oogenesis
- Athanassios D. Velentzas
- , Panagiotis D. Velentzas
- & Dimitrios J. Stravopodis
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| Open AccessDiscover the network mechanisms underlying the connections between aging and age-related diseases
- Jialiang Yang
- , Tao Huang
- & Zhidong Tu
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| Open AccessA mechanistic stochastic framework for regulating bacterial cell division
- Khem Raj Ghusinga
- , Cesar A. Vargas-Garcia
- & Abhyudai Singh