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| Open AccessFunctional classification of protein toxins as a basis for bioinformatic screening
- Surendra S. Negi
- , Catherine H. Schein
- & Werner Braun
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| Open AccessComparative genomics of Lactobacillus kefiranofaciens ZW3 and related members of Lactobacillus. spp reveal adaptations to dairy and gut environments
- Zhuqing Xing
- , Weitao Geng
- & Yanping Wang
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| Open AccessComparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles
- Songzhe Fu
- , Lester Hiley
- & Ruiting Lan
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| Open AccessSmall RNA profiles from Panax notoginseng roots differing in sizes reveal correlation between miR156 abundances and root biomass levels
- Yun Zheng
- , Kun Chen
- & Xiuming Cui
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| Open AccessEvolutionary shifts in gene expression decoupled from gene duplication across functionally distinct spider silk glands
- Thomas H. Clarke
- , Jessica E. Garb
- & Nadia A. Ayoub
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| Open AccessDynamic scaffolds for neuronal signaling: in silico analysis of the TANC protein family
- Alessandra Gasparini
- , Silvio C. E. Tosatto
- & Emanuela Leonardi
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| Open AccessEvidence of selection on splicing-associated loci in human populations and relevance to disease loci mapping
- Eric R. Gamazon
- , Anuar Konkashbaev
- & Younghee Lee
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| Open AccessIdentification of long non-coding RNAs in two anthozoan species and their possible implications for coral bleaching
- Chen Huang
- , Jean-Étienne R. L. Morlighem
- & Simon Ming-Yuen Lee
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| Open AccessPredicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences
- Munazah Andrabi
- , Andrew Paul Hutchins
- & Shandar Ahmad
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| Open AccessGenome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions
- Cheng Guo
- , Matthew Spinelli
- & Chun Liang
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| Open AccessComparative genomics and metabolomics analyses of the adaptation mechanism in Ketogulonicigenium vulgare-Bacillus thuringiensis consortium
- Nan Jia
- , Ming-Zhu Ding
- & Ying-Jin Yuan
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| Open AccessTranscriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes
- Julio C. Tafolla-Arellano
- , Yi Zheng
- & Martín E. Tiznado-Hernández
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| Open AccessComplete genome sequencing and antibiotics biosynthesis pathways analysis of Streptomyces lydicus 103
- Nan Jia
- , Ming-Zhu Ding
- & Ying-Jin Yuan
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| Open AccessChemosensory adaptations of the mountain fly Drosophila nigrosparsa (Insecta: Diptera) through genomics’ and structural biology’s lenses
- Francesco Cicconardi
- , Daniele Di Marino
- & Florian M. Steiner
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| Open AccessIdentification and functional analysis of long intergenic noncoding RNA genes in porcine pre-implantation embryonic development
- Jingyu Li
- , Zhengling Gao
- & Zhonghua Liu
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| Open AccesscircRNADb: A comprehensive database for human circular RNAs with protein-coding annotations
- Xiaoping Chen
- , Ping Han
- & Yan Li
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| Open AccessFFPred 3: feature-based function prediction for all Gene Ontology domains
- Domenico Cozzetto
- , Federico Minneci
- & David T. Jones
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| Open AccessComplete De Novo Assembly of Monoclonal Antibody Sequences
- Ngoc Hieu Tran
- , M. Ziaur Rahman
- & Ming Li
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| Open AccessDeciphering Variability of PKD1 and PKD2 in an Italian Cohort of 643 Patients with Autosomal Dominant Polycystic Kidney Disease (ADPKD)
- Paola Carrera
- , Silvia Calzavara
- & Maurizio Ferrari
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| Open AccessEndogenous Small-Noncoding RNAs and Potential Functions in Desiccation Tolerance in Physcomitrella Patens
- Jing Xia
- , Xiaoqin Wang
- & Weixiong Zhang
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| Open AccessComparative genomics analysis of the companion mechanisms of Bacillus thuringiensis Bc601 and Bacillus endophyticus Hbe603 in bacterial consortium
- Nan Jia
- , Ming-Zhu Ding
- & Ying-Jin Yuan
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| Open AccessCharacterization of piRNAs across postnatal development in mouse brain
- Yanal Ghosheh
- , Loqmane Seridi
- & Timothy Ravasi
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| Open AccessProtein Repeats from First Principles
- Pablo Turjanski
- , R. Gonzalo Parra
- & Diego U. Ferreiro
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| Open AccessInsights into mutualism mechanism and versatile metabolism of Ketogulonicigenium vulgare Hbe602 based on comparative genomics and metabolomics studies
- Nan Jia
- , Ming-Zhu Ding
- & Ying-Jin Yuan
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| Open AccessIntegrated analysis of mRNA-seq and miRNA-seq in the liver of Pelteobagrus vachelli in response to hypoxia
- Guosong Zhang
- , Shaowu Yin
- & Zhonglin Tang
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Article
| Open AccessSequence evidence for common ancestry of eukaryotic endomembrane coatomers
- Vasilis J. Promponas
- , Katerina R. Katsani
- & Christos A. Ouzounis
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| Open AccessComparative genomics and functional analysis of the 936 group of lactococcal Siphoviridae phages
- James Murphy
- , Francesca Bottacini
- & Douwe van Sinderen
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| Open AccessAnnoTALE: bioinformatics tools for identification, annotation and nomenclature of TALEs from Xanthomonas genomic sequences
- Jan Grau
- , Maik Reschke
- & Jens Boch
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Article
| Open AccessdetectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes
- Congting Ye
- , Guoli Ji
- & Chun Liang
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| Open AccessDistribution, function and evolution characterization of microsatellite in Sargassum thunbergii (Fucales, Phaeophyta) transcriptome and their application in marker development
- Fuli Liu
- , Zimin Hu
- & Xiutao Sun
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| Open AccessGenome wide discovery of long intergenic non-coding RNAs in Diamondback moth (Plutella xylostella) and their expression in insecticide resistant strains
- Kayvan Etebari
- , Michael J. Furlong
- & Sassan Asgari
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| Open AccessDraft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei
- Fernando E. Vega
- , Stuart M. Brown
- & Arnab Pain
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| Open AccessTranscriptome sequencing of three Pseudo-nitzschia species reveals comparable gene sets and the presence of Nitric Oxide Synthase genes in diatoms
- Valeria Di Dato
- , Francesco Musacchia
- & Maria Immacolata Ferrante
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| Open AccessIn silico identification of AMPylating enzymes and study of their divergent evolution
- Shradha Khater
- & Debasisa Mohanty
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Article
| Open AccessA novel DNA sequence motif in human and mouse genomes
- Shilu Zhang
- , Fang Du
- & Hongkai Ji
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| Open AccessDeciphering the Venomic Transcriptome of Killer-Wasp Vespa velutina
- Zhirui Liu
- , Shuanggang Chen
- & Yonghua Ji
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| Open AccessIntegrative analysis of differentially expressed microRNAs of pulmonary alveolar macrophages from piglets during H1N1 swine influenza A virus infection
- Pengfei Jiang
- , Na Zhou
- & Deli Zhang
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| Open AccessDistinguishing Proteins From Arbitrary Amino Acid Sequences
- Stephen S.-T. Yau
- , Wei-Guang Mao
- & Rong Lucy He
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| Open AccessNovel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture
- Noushin Ghaffari
- , Alejandro Sanchez-Flores
- & Michael F. Criscitiello
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| Open AccessTree shrew database (TreeshrewDB): a genomic knowledge base for the Chinese tree shrew
- Yu Fan
- , Dandan Yu
- & Yong-Gang Yao
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| Open AccessNRfamPred: A proteome-scale two level method for prediction of nuclear receptor proteins and their sub-families
- Ravindra Kumar
- , Bandana Kumari
- & Manish Kumar
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| Open AccessSequence-motif Detection of NAD(P)-binding Proteins: Discovery of a Unique Antibacterial Drug Target
- Yun Hao Hua
- , Chih Yuan Wu
- & Carmay Lim
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| Open AccessIdentification of an Ideal-like Fingerprint for a Protein Fold using Overlapped Conserved Residues based Approach
- Amit Goyal
- , Sriram Sokalingam
- & Sun-Gu Lee