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| Open AccessImmunoinformatics design of a structural proteins driven multi-epitope candidate vaccine against different SARS-CoV-2 variants based on fynomer
- Javad Sarvmeili
- , Bahram Baghban Kohnehrouz
- & Hamideh Ofoghi
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| Open AccessCharacterization of a putative orexin receptor in Ciona intestinalis sheds light on the evolution of the orexin/hypocretin system in chordates
- Maiju K. Rinne
- , Lauri Urvas
- & Henri Xhaard
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| Open Accesscyp51A mutations, protein modeling, and efflux pump gene expression reveals multifactorial complexity towards understanding Aspergillus section Nigri azole resistance mechanism
- Pooja Sen
- , Mukund Vijay
- & Pooja Vijayaraghavan
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| Open AccessImmunoinformatics and computational approaches driven designing a novel vaccine candidate against Powassan virus
- Truc Ly Nguyen
- & Heebal Kim
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| Open AccessImpact of mutations on the stability of SARS-CoV-2 nucleocapsid protein structure
- Nelli Muradyan
- , Vahram Arakelov
- & Karen Nazaryan
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| Open AccessIdentification and prioritisation of potential vaccine candidates using subtractive proteomics and designing of a multi-epitope vaccine against Wuchereria bancrofti
- Murali Aarthy
- , G. Navaneetha Pandiyan
- & Bhavna Gupta
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| Open AccessImmunoinformatics-guided approach for designing a pan-proteome multi-epitope subunit vaccine against African swine fever virus
- Alea Maurice Simbulan
- , Edward C. Banico
- & Fredmoore L. Orosco
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| Open AccessHow AlphaFold2 shaped the structural coverage of the human transmembrane proteome
- Márton A. Jambrich
- , Gabor E. Tusnady
- & Laszlo Dobson
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| Open AccessEngineering and design of promising T-cell-based multi-epitope vaccine candidates against leishmaniasis
- Esmaeil Roohparvar Basmenj
- , Mahshid Arastonejad
- & Hamid Irannejad
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| Open AccessComputational completion of the Aurora interaction region of N-Myc in the Aurora a kinase complex
- Pinar Altiner
- , Süleyman Selim Çınaroğlu
- & Emel Timucin
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| Open AccessEnhanced antibody-antigen structure prediction from molecular docking using AlphaFold2
- Francis Gaudreault
- , Christopher R. Corbeil
- & Traian Sulea
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| Open AccessInvestigating the novel-binding site of RPA2 on Menin and predicting the effect of point mutation of Menin through protein–protein interactions
- Gurjeet Kaur
- , Manisha Prajapat
- & Bikash Medhi
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| Open AccessIgG1 and IgG4 antibodies sample initial structure dependent local conformational states and exhibit non-identical Fab dynamics
- Ramakrishnan Natesan
- & Neeraj J. Agrawal
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| Open AccessAccurate prediction by AlphaFold2 for ligand binding in a reductive dehalogenase and implications for PFAS (per- and polyfluoroalkyl substance) biodegradation
- Hao-Bo Guo
- , Vanessa A. Varaljay
- & Rajiv Berry
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| Open AccessIn silico design of a polypeptide as a vaccine candidate against ascariasis
- Francisco M. D. Evangelista
- , Arnoud H. M. van Vliet
- & Martha Betson
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| Open AccessComputational analysis of the sequence-structure relation in SARS-CoV-2 spike protein using protein contact networks
- Pietro Hiram Guzzi
- , Luisa di Paola
- & Pierangelo Veltri
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| Open AccessPan-kinome of Legionella expanded by a bioinformatics survey
- Marianna Krysińska
- , Bartosz Baranowski
- & Marcin Gradowski
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| Open AccessStructural informatic study of determined and AlphaFold2 predicted molecular structures of 13 human solute carrier transporters and their water-soluble QTY variants
- Eva Smorodina
- , Igor Diankin
- & Shuguang Zhang
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| Open AccessLow-resolution description of the conformational space for intrinsically disordered proteins
- Daniel Förster
- , Jérôme Idier
- & Thérèse E. Malliavin
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| Open AccessProteinGLUE multi-task benchmark suite for self-supervised protein modeling
- Henriette Capel
- , Robin Weiler
- & K. Anton Feenstra
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| Open AccessADGRL3 genomic variation implicated in neurogenesis and ADHD links functional effects to the incretin polypeptide GIP
- Oscar M. Vidal
- , Jorge I. Vélez
- & Mauricio Arcos-Burgos
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| Open AccessMassive annotation of bacterial l-asparaginases reveals their puzzling distribution and frequent gene transfer events
- Andrzej Zielezinski
- , Joanna I. Loch
- & Mariusz Jaskolski
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| Open AccessPrediction of the structural interface between fibroblast growth factor23 and Burosumab using alanine scanning and molecular docking
- Karnpob Kanhasut
- , Kannan Tharakaraman
- & Ram Sasisekharan
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| Open AccessEstimation of model accuracy by a unique set of features and tree-based regressor
- Mor Bitton
- & Chen Keasar
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| Open AccessS-Pred: protein structural property prediction using MSA transformer
- Yiyu Hong
- , Jinung Song
- & Woong-Hee Shin
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| Open AccessAutism-associated mutation in Hevin/Sparcl1 induces endoplasmic reticulum stress through structural instability
- Takumi Taketomi
- , Takunori Yasuda
- & Fuminori Tsuruta
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| Open AccessInhibitor induced conformational changes in SARS-COV-2 papain-like protease
- Glaucio Monteiro Ferreira
- , Thanigaimalai Pillaiyar
- & Thales Kronenberger
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| Open AccessStructural and biochemical analysis reveals how ferulic acid improves catalytic efficiency of Humicola grisea xylanase
- Izadora Cristina Moreira Oliveira
- , Aisel Valle Garay
- & Sonia Maria Freitas
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| Open AccessStructure and function of cancer-related developmentally regulated GTP-binding protein 1 (DRG1) is conserved between sponges and humans
- Silvestar Beljan
- , Kristina Dominko
- & Helena Ćetković
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| Open AccessAlphaFold2 models indicate that protein sequence determines both structure and dynamics
- Hao-Bo Guo
- , Alexander Perminov
- & Rajiv Berry
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| Open AccessMapping immunogenic epitopes of an adhesin-like protein from Methanobrevibacter ruminantium M1 and comparison of empirical data with in silico prediction methods
- Sofia Khanum
- , Vincenzo Carbone
- & Axel Heiser
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| Open AccessMachine learning/molecular dynamic protein structure prediction approach to investigate the protein conformational ensemble
- Martina Audagnotto
- , Werngard Czechtizky
- & Johan Ulander
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| Open AccessDynamic insights into the effects of nonsynonymous polymorphisms (nsSNPs) on loss of TREM2 function
- Raju Dash
- , Yeasmin Akter Munni
- & Il Soo Moon
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| Open AccessNon-covalent Fc-Fab interactions significantly alter internal dynamics of an IgG1 antibody
- Ramakrishnan Natesan
- & Neeraj J. Agrawal
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| Open AccessHuman-to-dog transmission of SARS-CoV-2, Colombia
- Ricardo Rivero
- , Evelin Garay
- & Salim Mattar
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| Open AccessFirst biphotochromic fluorescent protein moxSAASoti stabilized for oxidizing environment
- N. K. Marynich
- , M. G. Khrenova
- & A. P. Savitsky
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| Open AccessReaching alignment-profile-based accuracy in predicting protein secondary and tertiary structural properties without alignment
- Jaspreet Singh
- , Kuldip Paliwal
- & Yaoqi Zhou
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| Open AccessEnhancing protein inter-residue real distance prediction by scrutinising deep learning models
- Julia Rahman
- , M. A. Hakim Newton
- & Abdul Sattar
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| Open AccessExtracting phylogenetic dimensions of coevolution reveals hidden functional signals
- Alexandre Colavin
- , Esha Atolia
- & Kerwyn Casey Huang
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| Open AccessRevealing the molecular interplay of curcumin as Culex pipiens Acetylcholine esterase 1 (AChE1) inhibitor
- Priyashi Rao
- , Dweipayan Goswami
- & Rakesh M. Rawal
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| Open AccessConcurrent mutations in RNA-dependent RNA polymerase and spike protein emerged as the epidemiologically most successful SARS-CoV-2 variant
- Sten Ilmjärv
- , Fabien Abdul
- & Karl-Heinz Krause
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| Open AccessMULTICOM2 open-source protein structure prediction system powered by deep learning and distance prediction
- Tianqi Wu
- , Jian Liu
- & Jianlin Cheng
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| Open AccessInsights into the substrate binding mechanism of SULT1A1 through molecular dynamics with excited normal modes simulations
- Balint Dudas
- , Daniel Toth
- & Maria A. Miteva
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| Open AccessCritical assessment of coiled-coil predictions based on protein structure data
- Dominic Simm
- , Klas Hatje
- & Martin Kollmar
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| Open AccessDNCON2_Inter: predicting interchain contacts for homodimeric and homomultimeric protein complexes using multiple sequence alignments of monomers and deep learning
- Farhan Quadir
- , Raj S. Roy
- & Jianlin Cheng
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| Open AccessProtein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14
- Xiao Chen
- , Jian Liu
- & Jianlin Cheng
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| Open AccessUnderstanding the influence of lipid bilayers and ligand molecules in determining the conformational dynamics of somatostatin receptor 2
- Santhosh Kumar Nagarajan
- , Sathya Babu
- & Thirumurthy Madhavan
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| Open AccessResequencing and SNP discovery of Amur ide (Leuciscus waleckii) provides insights into local adaptations to extreme environments
- Shuangyi Wang
- , Youyi Kuang
- & Yumei Chang
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| Open AccessExploring targeting peptide-shell interactions in encapsulin nanocompartments
- Wiggert J. Altenburg
- , Nathan Rollins
- & Tobias W. Giessen