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| Open AccessImmunoinformatics design of a structural proteins driven multi-epitope candidate vaccine against different SARS-CoV-2 variants based on fynomer
- Javad Sarvmeili
- , Bahram Baghban Kohnehrouz
- & Hamideh Ofoghi
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| Open AccessDeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes
- Leonardo Ledesma-Dominguez
- , Erik Carbajal-Degante
- & Ernesto Perez-Rueda
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| Open AccessPotential routes of plastics biotransformation involving novel plastizymes revealed by global multi-omic analysis of plastic associated microbes
- Rodney S. Ridley Jr
- , Roth E. Conrad
- & Konstantinos T. Konstantinidis
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| Open AccessQuantum biochemical analysis of the TtgR regulator and effectors
- E. G. de Carvalho Matias
- , K. S. Bezerra
- & U. L. Fulco
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| Open AccessEnhancing missense variant pathogenicity prediction with protein language models using VariPred
- Weining Lin
- , Jude Wells
- & Andrew C. R. Martin
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| Open AccessVirtuousPocketome: a computational tool for screening protein–ligand complexes to identify similar binding sites
- Lorenzo Pallante
- , Marco Cannariato
- & Marco A. Deriu
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| Open AccessPrediction of linear B-cell epitopes based on protein sequence features and BERT embeddings
- Fang Liu
- , ChengCheng Yuan
- & Fei Yang
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| Open AccessImmunoinformatics-guided approach for designing a pan-proteome multi-epitope subunit vaccine against African swine fever virus
- Alea Maurice Simbulan
- , Edward C. Banico
- & Fredmoore L. Orosco
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| Open AccessCharacterizing conformational states in GPCR structures using machine learning
- Ilya Buyanov
- & Petr Popov
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| Open AccessOptimizing strategy for the discovery of compositionally-biased or low-complexity regions in proteins
- Paul M. Harrison
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| Open AccessEvaluating sheep hemoglobins with MD simulations as an animal model for sickle cell disease
- Caroline E. Kuczynski
- , Christopher D. Porada
- & Graça Almeida-Porada
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| Open AccessUsing machine learning model explanations to identify proteins related to severity of meibomian gland dysfunction
- Andrea M. Storås
- , Fredrik Fineide
- & Michael A. Riegler
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| Open AccessPACT - Prediction of amyloid cross-interaction by threading
- Jakub W. Wojciechowski
- , Witold Szczurek
- & Malgorzata Kotulska
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| Open AccessPhenotyping EMT and MET cellular states in lung cancer patient liquid biopsies at a personalized level using mass cytometry
- Loukia G. Karacosta
- , Danny Pancirer
- & Sylvia K. Plevritis
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| Open AccessA sequence-based evolutionary distance method for Phylogenetic analysis of highly divergent proteins
- Wei Cao
- , Lu-Yun Wu
- & Xian-Ming Pan
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| Open AccessMulti-structural molecular docking (MOD) combined with molecular dynamics reveal the structural requirements of designing broad-spectrum inhibitors of SARS-CoV-2 entry to host cells
- Anqi Da
- , Meritxell Wu-Lu
- & Kourosh H. Ebrahimi
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| Open AccessComparative proteomic analysis of edible bird’s nest from different origins
- Xianyang Wang
- , Dingwen Hu
- & Geng Li
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| Open AccessCharacterization of signal and transit peptides based on motif composition and taxon-specific patterns
- Katarzyna Sidorczuk
- , Paweł Mackiewicz
- & Przemysław Gagat
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| Open AccessInteractions of the male contraceptive target EPPIN with semenogelin-1 and small organic ligands
- Antoniel A. S. Gomes
- , Natália C. M. Santos
- & Erick J. R. Silva
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| Open AccessA separable temporal convolutional networks based deep learning technique for discovering antiviral medicines
- Vishakha Singh
- & Sanjay Kumar Singh
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| Open AccessGenome-wide analysis and characterization of the LRR-RLK gene family provides insights into anthracnose resistance in common bean
- Caroline Marcela da Silva Dambroz
- , Alexandre Hild Aono
- & Welison Andrade Pereira
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| Open AccessUnveiling the functional epitopes of cobra venom cytotoxin by immunoinformatics and epitope-omic analyses
- Jia Jin Hiu
- , Jared Kah Yin Fung
- & Michelle Khai Khun Yap
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| Open AccessProteomic analysis of the effect of hemin in breast cancer
- G. P. Coló
- , K. Schweitzer
- & M. M. Facchinetti
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| Open AccessFull-scale network analysis reveals properties of the FV protein structure organization
- André J. Ferreira-Martins
- , Rodrigo Castaldoni
- & Tiago J. S. Lopes
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| Open AccessPrediction of protein subplastid localization and origin with PlastoGram
- Katarzyna Sidorczuk
- , Przemysław Gagat
- & Michał Burdukiewicz
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| Open AccessCoenzyme A binding sites induce proximal acylation across protein families
- Chris Carrico
- , Andrew Cruz
- & Eric Verdin
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| Open AccessIncreasing the melting temperature of VHH with the in silico free energy score
- Yusuke Tomimoto
- , Rika Yamazaki
- & Hiroki Shirai
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| Open AccessAccurate prediction by AlphaFold2 for ligand binding in a reductive dehalogenase and implications for PFAS (per- and polyfluoroalkyl substance) biodegradation
- Hao-Bo Guo
- , Vanessa A. Varaljay
- & Rajiv Berry
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| Open AccessA strategy for evaluating potential antiviral resistance to small molecule drugs and application to SARS-CoV-2
- Karen Sargsyan
- , Karine Mazmanian
- & Carmay Lim
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| Open AccessPan-kinome of Legionella expanded by a bioinformatics survey
- Marianna Krysińska
- , Bartosz Baranowski
- & Marcin Gradowski
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| Open AccessParallel functional annotation of cancer-associated missense mutations in histone methyltransferases
- Ashley J. Canning
- , Susan Viggiano
- & Michael S. Cosgrove
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| Open AccessMassive annotation of bacterial l-asparaginases reveals their puzzling distribution and frequent gene transfer events
- Andrzej Zielezinski
- , Joanna I. Loch
- & Mariusz Jaskolski
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| Open AccessPrediction of B cell epitopes in proteins using a novel sequence similarity-based method
- Alvaro Ras-Carmona
- , Alexander A. Lehmann
- & Pedro A. Reche
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| Open AccessIdentification of Daboia siamensis venome using integrated multi-omics data
- Thammakorn Saethang
- , Poorichaya Somparn
- & Trairak Pisitkun
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| Open AccessTheaflavin 3-gallate inhibits the main protease (Mpro) of SARS-CoV-2 and reduces its count in vitro
- Mahima Chauhan
- , Vijay Kumar Bhardwaj
- & Sanjay Kumar
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| Open AccessA genome-wide comparative evolutionary analysis of zinc finger-BED transcription factor genes in land plants
- Athar Hussain
- , Jinbao Liu
- & Karolina M. Pajerowska-Mukhtar
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| Open AccessInhibitor induced conformational changes in SARS-COV-2 papain-like protease
- Glaucio Monteiro Ferreira
- , Thanigaimalai Pillaiyar
- & Thales Kronenberger
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Article
| Open AccessStructure and function of cancer-related developmentally regulated GTP-binding protein 1 (DRG1) is conserved between sponges and humans
- Silvestar Beljan
- , Kristina Dominko
- & Helena Ćetković
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| Open AccessAn accurate alignment-free protein sequence comparator based on physicochemical properties of amino acids
- Saeedeh Akbari Rokn Abadi
- , Azam Sadat Abdosalehi
- & Somayyeh Koohi
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| Open AccessCooperative stability renders protein complex formation more robust and controllable
- Kuan-Lun Hsu
- , Hsueh-Chi S. Yen
- & Chen-Hsiang Yeang
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| Open AccessUnderstanding and predicting the functional consequences of missense mutations in BRCA1 and BRCA2
- Raghad Aljarf
- , Mengyuan Shen
- & David B. Ascher
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| Open AccessDeep embeddings to comprehend and visualize microbiome protein space
- Krzysztof Odrzywolek
- , Zuzanna Karwowska
- & Tomasz Kosciolek
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| Open AccessDynamic insights into the effects of nonsynonymous polymorphisms (nsSNPs) on loss of TREM2 function
- Raju Dash
- , Yeasmin Akter Munni
- & Il Soo Moon
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| Open AccessSubstantiation of propitious “Enzybiotic” from two novel bacteriophages isolated from a wastewater treatment plant in Qatar
- Ramya Ramadoss
- , Moza Al-Shukri
- & Annette Shoba Vincent
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| Open AccessAssessment of mutations on RBD in the Spike protein of SARS-CoV-2 Alpha, Delta and Omicron variants
- Clauber Henrique Souza da Costa
- , Camila Auad Beltrão de Freitas
- & Jerônimo Lameira
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| Open AccessComparing protein–protein interaction networks of SARS-CoV-2 and (H1N1) influenza using topological features
- Hakimeh Khojasteh
- , Alireza Khanteymoori
- & Mohammad Hossein Olyaee
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| Open AccessLIM domain-wide comprehensive virtual mutagenesis provides structural rationale for cardiomyopathy mutations in CSRP3
- Pankaj Kumar Chauhan
- & Ramanathan Sowdhamini
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| Open AccessInteractions of Co, Cu, and non-metal phthalocyanines with external structures of SARS-CoV-2 using docking and molecular dynamics
- Wilson Luna Machado Alencar
- , Tiago da Silva Arouche
- & Antonio Maia de Jesus Chaves Neto
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| Open AccessRegulated cell death joins in atherosclerotic plaque silent progression
- Elena Uyy
- , Viorel I. Suica
- & Felicia Antohe