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Article
| Open AccessNitric oxide controls shoot meristem activity via regulation of DNA methylation
The authors show that gaseous Nitric Oxide (NO) promotes transit amplifying cell fate in the Arabidopsis shoot meristem. NO acts by modifying AGO4-WUSCHEL protein interactions in stem cells, directly linking NO signaling with DNA methylation.
- Jian Zeng
- , Xin’Ai Zhao
- & Jan U. Lohmann
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Article
| Open AccessA structure of the relict phycobilisome from a thylakoid-free cyanobacterium
Phycobilisomes are megacomplexes in cyanobacteria that capture light. Here, authors characterize a relict paddle-shaped phycobilisome structure, revealing phycobilisome diversity prior to the development of thylakoids.
- Han-Wei Jiang
- , Hsiang-Yi Wu
- & Ming-Yang Ho
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Article
| Open AccessIdentifying microbiota community patterns important for plant protection using synthetic communities and machine learning
The authors investigate microbiota properties for plant protection using synthetic communities and machine learning approaches. They identify strains that reduce pathogen colonization despite variation in microbiota composition.
- Barbara Emmenegger
- , Julien Massoni
- & Julia A. Vorholt
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Article
| Open AccessEvolution of masting in plants is linked to investment in low tissue mortality
Factors behind interspecific variation in masting are unclear. Here, the authors show that, in 517 species of terrestrial perennial plants, masting is more frequent in species that have high stem tissue density, suggesting that stronger stress resistance may buffer against missed reproductive opportunities.
- Valentin Journé
- , Andrew Hacket-Pain
- & Michał Bogdziewicz
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Article
| Open AccessSoybean reduced internode 1 determines internode length and improves grain yield at dense planting
Many cereal crops have been bred to be more compact to allow high-density planting, but soybean has remained relatively overlooked. Here, the authors describe a compact soybean mutant, reduced internode 1, that significantly enhances grain yield under high-density planting conditions compared to an elite cultivar.
- Shichen Li
- , Zhihui Sun
- & Sijia Lu
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Article
| Open AccessDominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility
Self-incompatibility in diploid Arabidopsis relatives is determined by a dominance relationship that is epigenetically regulated. Using transgenic methods, this study demonstrates that the dominance relationship between subgenomes of the allopolyploid species Arabidopsis kamchatica underlies it’s self-compatibility.
- Chow-Lih Yew
- , Takashi Tsuchimatsu
- & Kentaro K. Shimizu
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Article
| Open AccessArabidopsis telomerase takes off by uncoupling enzyme activity from telomere length maintenance in space
Telomeres are proposed to be sentinels for stress. Here, the authors report a strong induction of telomerase in space-flown Arabidopsis without telomere length changes. Instead, telomerase activity is inversely correlated with genome oxidation
- Borja Barbero Barcenilla
- , Alexander D. Meyers
- & Dorothy E. Shippen
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Article
| Open AccessA papain-like cysteine protease-released small signal peptide confers wheat resistance to wheat yellow mosaic virus
Soil-borne wheat yellow mosaic virus (WYMV) poses a serious threat to global wheat production. Here, the authors report that the nuclear inclusion protease-a produced by WYMV interacts with a small peptide catalyzed by TaRD21A protease activity to mediate WYMV resistance through activating MAPK signaling pathway.
- Peng Liu
- , Chaonan Shi
- & Jian Yang
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Article
| Open AccessDNA polymerase ε harmonizes topological states and R-loops formation to maintain genome integrity in Arabidopsis
Here the authors show that Inhibition of DNA topoisomerase 1 (TOP1i) increases the defects in root growth of a DNA damage repair-compromised mutant atm. They identify a mutant DNA polymerase ε (POL2A) which rescues the sensitivity of atm to TOP1i by modulating R-loops dynamics near DNA replication origins.
- Qin Li
- , Jincong Zhou
- & Qianwen Sun
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Matters Arising
| Open AccessGAS2 encodes a 2-oxoglutarate dependent dioxygenase involved in ABA catabolism
- Theo Lange
- , Nadiem Atiq
- & Maria João Pimenta Lange
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Article
| Open AccessLoss-of-function of an α-SNAP gene confers resistance to soybean cyst nematode
Here, the authors show that the soybean GmSNAP02 gene confers a unique mode of resistance to the soybean cyst nematode Heterodera glycines through loss-of-function mutations that implicate GmSNAP02 as a nematode virulence target.
- Mariola Usovsky
- , Vinavi A. Gamage
- & Andrew M. Scaboo
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Article
| Open AccessLHP1-mediated epigenetic buffering of subgenome diversity and defense responses confers genome plasticity and adaptability in allopolyploid wheat
The regulation of genetic diversity resulting from polyploidization and its impact on environmental adaptability remain unclear. Here, the authors show that LHP1-mediated epigenetic buffering of subgenome diversity and defense responses confers genome plasticity and adaptability in allopolyploid wheat.
- Zijuan Li
- , Yuyun Zhang
- & Yijing Zhang
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Article
| Open AccessA toxin-antidote system contributes to interspecific reproductive isolation in rice
Orzya meridionalis is a wild rice species that has reproductive isolation with Asian cultivated rice. Here, the authors report the cloning of the second locus controlling hybrid male sterility between the two species and show the encoded toxin-antidote system provides stacked reproductive isolation for maintaining species identity.
- Shimin You
- , Zhigang Zhao
- & Jianmin Wan
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Article
| Open AccessAdaptive traits of cysts of the snow alga Sanguina nivaloides unveiled by 3D subcellular imaging
Sanguina nivaloides thrives in red snowfields worldwide. It cannot be cultivated. Using environmental samples, 3D electron microscopy combined with functional analyzes revealed unique cell architecture features adapted to life in a snowy environment.
- Jade A. Ezzedine
- , Clarisse Uwizeye
- & Eric Maréchal
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Article
| Open AccessH3.1K27me1 loss confers Arabidopsis resistance to Geminivirus by sequestering DNA repair proteins onto host genome
Geminiviruses hijack the host DNA repairing proteins for their amplification. The authors report that Arabidopsis loses H3.1K27me1, a protector of genome stability, but gains resistance to geminivirus infection via retaining key factors like RAD51.
- Zhen Wang
- , Claudia M. Castillo-González
- & Xiuren Zhang
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Article
| Open AccessTranscriptome-wide association analyses reveal the impact of regulatory variants on rice panicle architecture and causal gene regulatory networks
Panicle architecture significantly determines rice grain yield. Here, the authors investigate the transcriptome of young panicles from 275 rice varieties and propose a method to identify causal genes for panicle traits and construct regulatory networks.
- Luchang Ming
- , Debao Fu
- & Weibo Xie
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Article
| Open AccessMechanically-primed voltage-gated proton channels from angiosperm plants
The authors describe a proton channel protein in the vasculature of Arabidopsis thaliana that requires both mechanical and electrical stimuli to turn on. A mechanistic analysis identifies the molecular determinants for the hybrid activation process.
- Chang Zhao
- , Parker D. Webster
- & Francesco Tombola
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Article
| Open AccessDiurnal switches in diazotrophic lifestyle increase nitrogen contribution to cereals
Engineering ammonium excretion diazotrophs suffers from severe penalties to the bacteria. Here, the authors utilize a thermo-sensitive glutamine synthetase-based regulatory switch that permits diurnal changes in diazotrophic lifestyle, coincident with seasonal temperatures for cereal cultivation.
- Yuqian Tang
- , Debin Qin
- & Yi-Ping Wang
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Article
| Open AccessActomyosin and CSI1/POM2 cooperate to deliver cellulose synthase from Golgi to cortical microtubules in Arabidopsis
Cellulose is synthesized by cellulose synthase complexes (CSCs), which are trafficked and delivered from the Golgi apparatus to the plasma membrane. Here Liu et al. reveal a non-canonical route for CSCs exiting from the Golgi.
- Lu Liu
- , Ting Wang
- & Yi Zhang
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Article
| Open AccessPolyethyleneimine-coated MXene quantum dots improve cotton tolerance to Verticillium dahliae by maintaining ROS homeostasis
Verticillum wilt is an important cotton disease caused by fungal pathogen Verticillium dahiae. Here, the authors assemble the genomes of defoliating and non-defoliating isolates of the pathogen, identify virulence gene SP3, and develop a disease control strategy using polyethyleneimine-coated MXene quantum dots.
- Ping Qiu
- , Jiayue Li
- & Longfu Zhu
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Article
| Open AccessPan-genome analysis of 13 Malus accessions reveals structural and sequence variations associated with fruit traits
A pan-genome can reduce bias in genetic diversity analysis inherent in using a single reference genome. Here, the authors assemble genomes of 10 diverse apple accessions, conduct pan-genome analysis together with three existing genomes, and reveal the role of mitogen-activated protein kinase homolog MMK2 in fruit coloration.
- Ting Wang
- , Shiyao Duan
- & Ting Wu
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Article
| Open AccessStreptomyces alleviate abiotic stress in plant by producing pteridic acids
Soil microbiota can increase crop resilience to abiotic stressors. Here the authors show that Streptomyces produce bioactive spiroketal polyketides to enhance plant growth under drought and salt stress.
- Zhijie Yang
- , Yijun Qiao
- & Ling Ding
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Article
| Open AccessSingle amino acid change alters specificity of the multi-allelic wheat stem rust resistance locus SR9
Among all wheat rust resistance genes, SR9 has the largest number of alleles. Here, the authors use gene cloning, complementation and comparative genetics to resolve the relationship among Sr9 alleles, confirm their allelic identities, and show that a single amino acid change leads to resistance to Ug99.
- Jianping Zhang
- , Jayaveeramuthu Nirmala
- & Evans Lagudah
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Article
| Open AccessConfined-microtubule assembly shapes three-dimensional cell wall structures in xylem vessels
In plant metaxylem, three-dimensional cell wall arches are formed over pit membranes. Here, the authors show that the microtubule-associated proteins, MAP70-5 and MAP70-1, confine microtubules within the pit aperture and direct growth of pit arches in the proper orientation.
- Takema Sasaki
- , Kei Saito
- & Yoshihisa Oda
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Article
| Open AccessCopy number variation of the restorer Rf4 underlies human selection of three-line hybrid rice breeding
Ctyoplasmic male sterility gene WA352 and its fertility restorer Rf4 are widely used for commercial three-line hybrid rice production. Here, the authors investigate the origin, evolution, and variation of Rf4, and show that copy number variation of Rf4 contributes of fertility restoration in a dosage-dependent manner.
- Zhe Zhao
- , Zhi Ding
- & Letian Chen
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Article
| Open AccessBiosynthesis of barley wax β-diketones: a type-III polyketide synthase condensing two fatty acyl units
Barley plants coat their organs with waxy diketones to protect against late-summer droughts. These diketones are formed by two enzymes, one diverting common fatty acids from normal metabolism and the other one linking two fatty acid units together.
- Yulin Sun
- , Alberto Ruiz Orduna
- & Reinhard Jetter
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Article
| Open AccessCoordinated regulation of the entry and exit steps of aromatic amino acid biosynthesis supports the dual lignin pathway in grasses
The study by El-Azaz et al. uncovers how grasses fine-tune tyrosine and phenylalanine production to support their unique dual entry pathway to lignin and phenylpropanoids. The findings help improve sustainable production of aromatic chemicals in crops.
- Jorge El-Azaz
- , Bethany Moore
- & Hiroshi A. Maeda
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Article
| Open AccessSpatial transcriptomics uncover sucrose post-phloem transport during maize kernel development
Maize kernels have long intrigued researchers due to their complex structure. Through microscopic sectioning and spatial transcriptomics, the authors observed the spatial distribution of RNA through electronic RNA in situ hybridization maps and discovered how storage accumulation occurs.
- Yuxin Fu
- , Wenxin Xiao
- & Wenqin Wang
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Article
| Open AccessSingle-cell analysis identifies genes facilitating rhizobium infection in Lotus japonicus
The authors use single-cell analysis to identify genes specifically expressed in plant root cells that respond to infection by nitrogen-fixing rhizobia. They show that one of these genes, SYMRKL1, is required for normal progression of infection.
- Manuel Frank
- , Lavinia Ioana Fechete
- & Stig Uggerhøj Andersen
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Article
| Open AccessEcophysiological adaptations shape distributions of closely related trees along a climatic moisture gradient
Energetic tradeoffs help determine where individual traits confer a competitive advantage. Here, the authors grow ten Eucalyptus species at four common gardens along a rainfall gradient and show that 50 traits mostly vary as predicted, and that species in their native ranges generally outperform others in height growth.
- Duncan D. Smith
- , Mark A. Adams
- & Thomas J. Givnish
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Article
| Open AccessAdjustment of light-responsive NADP dynamics in chloroplasts by stromal pH
NADP+ is the final electron acceptor for linear electron transfer in photosynthesis. Here, the authors show that the NADP pool size is modulated by its interconversion with NAD via ΔpH regulation in response to varying light conditions.
- Yusuke Fukuda
- , Chinami Ishiyama
- & Shin-nosuke Hashida
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Article
| Open AccessEvolution of a ZW sex chromosome system in willows
Investigation of heterogametic transitions in sex chromosomes is challenging but fascinating from an evolutionary perspective. Here, Hu et al. have identified a transition from an XY to a ZW system in the genus Salix (willows) where both the Z and W chromosomes have originated from the ancestral Y.
- Nan Hu
- , Brian J. Sanderson
- & Matthew S. Olson
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Article
| Open AccessPetal size is controlled by the MYB73/TPL/HDA19-miR159-CKX6 module regulating cytokinin catabolism in Rosa hybrida
Expression of MIR159 is attenuated by a MYB73/TPL/HDA19 repression complex during rose petal development. Reduced MIR159 levels lead to accumulation of Cytokinin Oxidase 6, causing cytokinin clearance and subsequent arrest of cell division.
- Weikun Jing
- , Feifei Gong
- & Nan Ma
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Article
| Open AccessTwo subtypes of GTPase-activating proteins coordinate tip growth and cell size regulation in Physcomitrium patens
Using the moss Physcomitrium patens, the authors reveal that PpRopGAPs and PpRenGAP redundantly regulate tip growth by inactivating ROP GTPases and influencing their membrane organization. They display distinct GAP activities and binding capacities to ROPs and oppositely regulate cell width when overexpressed.
- Jingtong Ruan
- , Linyu Lai
- & Peishan Yi
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Article
| Open AccessDeciphering triterpenoid saponin biosynthesis by leveraging transcriptome response to methyl jasmonate elicitation in Saponaria vaccaria
Methyl jasmonate triggers saponin production in Saponaria vaccaria. Using transcriptome data and heterologous expression, the authors identify P450s and glycosyltransferases that modify triterpenoids. They also discover the pathway for UDP-D-fucose biosynthesis.
- Xiaoyue Chen
- , Graham A. Hudson
- & Henrik V. Scheller
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Article
| Open AccessGrowth in fluctuating light buffers plants against photorespiratory perturbations
The detoxification pathway photorespiration has been thought to be photoprotective in dynamic light. The authors report that, instead, growth in dynamic light buffers plants against photorespiratory lesions by reducing photosynthesis and inducing metabolite re-routing.
- Thekla von Bismarck
- , Philipp Wendering
- & Ute Armbruster
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Article
| Open AccessDiscovery of isoflavone phytoalexins in wheat reveals an alternative route to isoflavonoid biosynthesis
Isoflavones are mostly found in the legumes, and little is known about their formation outside of this family. Here, the authors discover an isoflavone synthase gene in wheat, found in a pathogen-induced gene cluster encoding isoflavone biosynthesis.
- Guy Polturak
- , Rajesh Chandra Misra
- & Anne Osbourn
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Article
| Open AccessNanobody-based VSR7 tracing shows clathrin-dependent TGN to Golgi recycling
Nanobody-epitope interaction-based analysis of the Arabidopsis VACUOLAR SORTING RECEPTOR7 (VSR7) suggests immobilization-based ligand transport to the TGN/EE and ends due to acidity-driven ligand release and clathrin-dependent receptor recycling.
- Xiaoyu Shao
- , Hao Xu
- & Peter Pimpl
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Article
| Open AccessIncreasing atmospheric dryness reduces boreal forest tree growth
How trees respond to increasing atmospheric dryness has important implications for forest growth. Here, the authors use a network of tree-ring records to quantify the multidecadal impact of vapour pressure deficit trends on boreal forests in Canada.
- Ariane Mirabel
- , Martin P. Girardin
- & Peter B. Reich
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Article
| Open AccessLeveraging data from the Genomes-to-Fields Initiative to investigate genotype-by-environment interactions in maize in North America
The Genomes-to-Fields (G2F) initiative has collected large amount of maize phenotype and genotype data. Here, the authors develop an automated workflow for curating the data, matching it with public weather and soil data, and generating environmental covariates for phenotypic data, which pave the way for several GxE investigations.
- Marco Lopez-Cruz
- , Fernando M. Aguate
- & Gustavo de los Campos
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Article
| Open AccessShade-induced RTFL/DVL peptides negatively regulate the shade response by directly interacting with BSKs in Arabidopsis
Shade avoidance responses help plants to compete with neighbors for light. Here, the authors show that low R:FR-induced RTFLs interact with BSK3/6 and reduce the protein levels of PIF4 to prevent exaggerated shade avoidance responses.
- Sha Huang
- , Yu Ma
- & Lin Li
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Article
| Open AccessN-hydroxypipecolic acid triggers systemic acquired resistance through extracellular NAD(P)
Systemic acquired resistance (SAR) is a plant immune response triggered by mobile signals generated at the primary infection site. Here the authors show that one such mobile signal, N-hydroxypipecolic acid, can trigger production of eNAD(P) that activates SAR through the LecRK-VI.2 receptor.
- Qi Li
- , Mingxi Zhou
- & Zhonglin Mou
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Article
| Open AccessPH13 improves soybean shade traits and enhances yield for high-density planting at high latitudes
How plant height is adaptive to high latitudes and high density planting is unclear. Here, the authors report a retrotransposon insertion in a WD40 protein encoding gene PH13 affects its interaction with GmCOP1s and increases the abundance of STF1/2, leading to reduced soybean height and increased shade resistance.
- Chao Qin
- , Ying-hui Li
- & Bin Liu
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Article
| Open AccessA mitochondrial pentatricopeptide repeat protein enhances cold tolerance by modulating mitochondrial superoxide in rice
Cold stress hampers rice growth and yield. This paper demonstrates that mitochondrial superoxide plays a key role in cold responses, and identifies a pentatricopeptide repeat protein which modulates mitochondrial superoxide and rice cold tolerance.
- Xiaofeng Zu
- , Lilan Luo
- & Xiaofeng Cao
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Article
| Open AccessHidden prevalence of deletion-inversion bi-alleles in CRISPR-mediated deletions of tandemly arrayed genes in plants
The multiplex CRISPR system is the tool of choice for creating targeted tandemly arrayed genes (TAGs) deletions in plants. Here, the authors show that up to 80% of CRISPR-mediated TAG knockout alleles in Arabidopsis and rice are deletion-inversion bi-alleles, an unwanted products of targeted TAG deletions.
- Jiuer Liu
- , Feng-Zhu Wang
- & Jian-Feng Li
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Article
| Open AccessProlonged hydrogen production by engineered green algae photovoltaic power stations
Cost, scalability, and durability are critical factors determining the application of artificial photosynthesis systems. Here, the authors address these problems by inserting a carbon nanofiber into the chloroplast of green algae to transfer of electrons for photosynthesis and demonstrate H2 production up to 50 days.
- Hyo Jin Gwon
- , Geonwoo Park
- & Hyun S. Ahn
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Article
| Open AccessA transcriptional activator effector of Ustilago maydis regulates hyperplasia in maize during pathogen-induced tumor formation
Ustilago maydis causes tumor on maize seedlings. Here we show that U. maydis secrets the transcriptional activator effector Sts2 to induce leaf developmental regulators which activate the bundle sheath cell division for tumor formation.
- Weiliang Zuo
- , Jasper R. L. Depotter
- & Gunther Doehlemann
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Article
| Open AccessMSH2 stimulates interfering and inhibits non-interfering crossovers in response to genetic polymorphism
Interhomolog polymorphism, which is detected by MSH2-containing heterodimers, may affect crossover outcomes during meiosis. Here, the authors revealed antagonistic effects of MSH2 on interfering and non-interfering crossover pathways in Arabidopsis.
- Julia Dluzewska
- , Wojciech Dziegielewski
- & Piotr A. Ziolkowski
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Article
| Open AccessA silicon transporter gene required for healthy growth of rice on land
Rice actively accumulates silicon as amorphous silica (phytoliths), which protects the plant from various stresses. Here, the authors show that SlET4, a polarly localizes Si transporter, exports Si from leaf cells to the leaf surface and is required for healthy growth of rice on land.
- Namiki Mitani-Ueno
- , Naoki Yamaji
- & Jian Feng Ma
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