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| Open AccessStabilized Reconstruction of Signaling Networks from Single-Cell Cue-Response Data
- Sunil Kumar
- , Xiao-Kang Lun
- & Heinz Koeppl
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| Open AccessA Multi-Omics Interpretable Machine Learning Model Reveals Modes of Action of Small Molecules
- Natasha L. Patel-Murray
- , Miriam Adam
- & Ernest Fraenkel
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| Open AccessFBA Ecological Guild: Trio of Firmicutes-Bacteroidetes Alliance against Actinobacteria in Human Oral Microbiome
- Wendy Li
- & Zhanshan (Sam) Ma
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| Open AccessCritical synchronization dynamics of the Kuramoto model on connectome and small world graphs
- Géza Ódor
- & Jeffrey Kelling
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| Open AccessTopControl: A Tool to Prioritize Candidate Disease-associated Genes based on Topological Network Features
- Maryam Nazarieh
- & Volkhard Helms
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| Open AccessLongitudinal structural connectomic and rich-club analysis in adolescent mTBI reveals persistent, distributed brain alterations acutely through to one year post-injury
- Ai Wern Chung
- , Rebekah Mannix
- & Kiho Im
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| Open AccessExhaustion of CD4+ T-cells mediated by the Kynurenine Pathway in Melanoma
- Soudabeh Rad Pour
- , Hiromasa Morikawa
- & Jesper Tegnér
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| Open AccessGlioblastoma multiforme restructures the topological connectivity of cerebrovascular networks
- Artur Hahn
- , Julia Bode
- & Felix T. Kurz
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| Open AccessLink clustering explains non-central and contextually essential genes in protein interaction networks
- Inhae Kim
- , Heetak Lee
- & Sanguk Kim
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| Open AccessA Statistical Test for Differential Network Analysis Based on Inference of Gaussian Graphical Model
- Hao He
- , Shaolong Cao
- & Hong-wen Deng
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Article
| Open AccessDiscovering Links Between Side Effects and Drugs Using a Diffusion Based Method
- Mohan Timilsina
- , Meera Tandan
- & Haixuan Yang
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| Open AccessA subset of topologically associating domains fold into mesoscale core-periphery networks
- Harvey Huang
- , Sunnia T. Chen
- & Jennifer E. Phillips-Cremins
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| Open AccessExploratory Gene Ontology Analysis with Interactive Visualization
- Junjie Zhu
- , Qian Zhao
- & Chiara Sabatti
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Article
| Open AccessA systematic approach re-analyzing the effects of temperature disturbance on the microbial community of mesophilic anaerobic digestion
- Grace Tzun-Wen Shaw
- , Chieh-Yin Weng
- & Daryi Wang
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Article
| Open AccessVerbal Abuse Related to Self-Esteem Damage and Unjust Blame Harms Mental Health and Social Interaction in College Population
- Je-Yeon Yun
- , Geumsook Shim
- & Bumseok Jeong
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| Open AccessGene Saturation: An Approach to Assess Exploration Stage of Gene Interaction Networks
- Yin Ziqiao
- , Guo Binghui
- & Zheng Zhiming
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| Open AccessLinking Binary Gene Relationships to Drivers of Renal Cell Carcinoma Reveals Convergent Function in Alternate Tumor Progression Paths
- William L. Poehlman
- , James J. Hsieh
- & F. Alex Feltus
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Article
| Open AccessLower limb amputees undergo long-distance plasticity in sensorimotor functional connectivity
- Ivanei E. Bramati
- , Erika C. Rodrigues
- & Fernanda Tovar-Moll
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| Open AccessNetwork controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems
- Vandana Ravindran
- , Jose C. Nacher
- & David L. Robertson
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| Open AccessA network biology approach to unraveling inherited axonopathies
- Dana M. Bis-Brewer
- , Matt C. Danzi
- & Stephan Züchner
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| Open AccessInferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
- Swapnil Kumar
- , Kumari Snehkant Lata
- & Jayashankar Das
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Article
| Open AccessMechanisms for lyssavirus persistence in non-synanthropic bats in Europe: insights from a modeling study
- Davide Colombi
- , Jordi Serra-Cobo
- & Vittoria Colizza
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| Open AccessFinding and analysing the minimum set of driver nodes required to control multilayer networks
- Jose C. Nacher
- , Masayuki Ishitsuka
- & Tatsuya Akutsu
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| Open AccessConserved Transcriptional Signatures in Human and Murine Diabetic Peripheral Neuropathy
- Brett A. McGregor
- , Stephanie Eid
- & Junguk Hur
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| Open AccessInteraction paths promote module integration and network-level robustness of spliceosome to cascading effects
- Paulo R. Guimarães Jr
- , Mathias M. Pires
- & Patricia P. Coltri
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| Open AccessUncovering the mechanism of Maxing Ganshi Decoction on asthma from a systematic perspective: A network pharmacology study
- Wenjie Song
- , Shenglou Ni
- & Yun Wang
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| Open AccessA genome-scale metabolic network alignment method within a hypergraph-based framework using a rotational tensor-vector product
- Tie Shen
- , Zhengdong Zhang
- & Xiaoyao Xie
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| Open AccessDisease networks identify specific conditions and pleiotropy influencing multimorbidity in the general population
- A. Amell
- , A. Roso-Llorach
- & C. Violán
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| Open AccessModelling Self-Organization in Complex Networks Via a Brain-Inspired Network Automata Theory Improves Link Reliability in Protein Interactomes
- Carlo Vittorio Cannistraci
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| Open AccessChanging characteristics of the empathic communication network after empathy-enhancement program for medical students
- Je-Yeon Yun
- , Kyoung Hee Kim
- & Min-Sup Shin
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| Open AccessStructural robustness of mammalian transcription factor networks reveals plasticity across development
- J. L. Caldu-Primo
- , E. R. Alvarez-Buylla
- & J. Davila-Velderrain
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| Open AccessComputational characterization and identification of human polycystic ovary syndrome genes
- Xing-Zhong Zhang
- , Yan-Li Pang
- & Yan-Hui Li
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| Open AccessTopological motifs populate complex networks through grouped attachment
- Jaejoon Choi
- & Doheon Lee
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| Open AccessFrom homogeneous to heterogeneous network alignment via colored graphlets
- Shawn Gu
- , John Johnson
- & Tijana Milenković
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| Open AccessSearching the overlap between network modules with specific betweeness (S2B) and its application to cross-disease analysis
- Marina L. Garcia-Vaquero
- , Margarida Gama-Carvalho
- & Francisco R. Pinto
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| Open AccessDetecting intermittent switching leadership in coupled dynamical systems
- Violet Mwaffo
- , Jishnu Keshavan
- & Sean Humbert
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| Open AccessA distributed algorithm to maintain and repair the trail networks of arboreal ants
- Arjun Chandrasekhar
- , Deborah M. Gordon
- & Saket Navlakha
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| Open AccessComparative analysis of two discretizations of Ricci curvature for complex networks
- Areejit Samal
- , R. P. Sreejith
- & Jürgen Jost
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| Open AccessSubgenual anterior cingulate cortex controls sadness-induced modulations of cognitive and emotional network hubs
- Juan P. Ramirez-Mahaluf
- , Joan Perramon
- & Albert Compte
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| Open AccessCircuit variability interacts with excitatory-inhibitory diversity of interneurons to regulate network encoding capacity
- Kuo-Ting Tsai
- , Chin-Kun Hu
- & Ya-Hui Chou
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| Open AccessA logic-based method to build signaling networks and propose experimental plans
- Adrien Rougny
- , Pauline Gloaguen
- & Christine Froidevaux
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| Open AccessMTGO: PPI Network Analysis Via Topological and Functional Module Identification
- Danila Vella
- , Simone Marini
- & Riccardo Bellazzi
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| Open AccessTopological estimation of signal flow in complex signaling networks
- Daewon Lee
- & Kwang-Hyun Cho
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| Open AccessTranscription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
- Milsee Mol
- , Dipali Kosey
- & Shailza Singh
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| Open AccessdynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data
- Vân Anh Huynh-Thu
- & Pierre Geurts
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| Open AccessEfficient communication dynamics on macro-connectome, and the propagation speed
- Masanori Shimono
- & Naomichi Hatano
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| Open AccessMeasuring dynamic social contacts in a rehabilitation hospital: effect of wards, patient and staff characteristics
- Audrey Duval
- , Thomas Obadia
- & Isabelle Villain