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| Open AccessThe Pseudomonas aeruginosa DksA1 protein is involved in H2O2 tolerance and within-macrophages survival and can be replaced by DksA2
- Alessandra Fortuna
- , Diletta Collalto
- & Livia Leoni
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| Open AccessEpidemiological characterization of SARS-CoV-2 variants in children over the four COVID-19 waves and correlation with clinical presentation
- Claudia Alteri
- , Rossana Scutari
- & Carlo Federico Perno
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| Open AccessCaecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination
- Marion Borey
- , Bertrand Bed’Hom
- & Fanny Calenge
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| Open AccessMaximum depth sequencing reveals an ON/OFF replication slippage switch and apparent in vivo selection for bifidobacterial pilus expression
- Christophe Penno
- , Mary O’Connell Motherway
- & Douwe van Sinderen
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| Open AccessMetagenomic assembled plasmids of the human microbiome vary across disease cohorts
- S. R. Stockdale
- , R. S. Harrington
- & C. Hill
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| Open AccessGenomic, morphological, and biochemical analyses of a multi-metal resistant but multi-drug susceptible strain of Bordetella petrii from hospital soil
- Urmi Halder
- , Raju Biswas
- & Rajib Bandopadhyay
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| Open AccessCharacterisation of drug-resistant Mycobacterium tuberculosis mutations and transmission in Pakistan
- Gary Napier
- , Anwar Sheed Khan
- & Taane G. Clark
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| Open AccessImpact of salivary and pancreatic amylase gene copy numbers on diabetes, obesity, and functional profiles of microbiome in Northern Japanese population
- Takanori Hasegawa
- , Masanori Kakuta
- & Seiya Imoto
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| Open AccessA systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli
- Irina A. Rodionova
- , Ye Gao
- & Bernhard O. Palsson
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| Open AccessMutational spectrum of hepatitis C virus in patients with chronic hepatitis C determined by single molecule real-time sequencing
- Fumiyasu Nakamura
- , Haruhiko Takeda
- & Hiroshi Seno
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| Open AccessDetection and genetic diversity of Bartonella species in small mammals from the central region of the Qinghai-Tibetan Plateau, China
- Juan Yu
- , Qingduo Li
- & Huaxiang Rao
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| Open AccessChromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia
- Natalia O. Dranenko
- , Maria N. Tutukina
- & Olga O. Bochkareva
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| Open AccessIdentification of vaginal microbiome associated with IVF pregnancy
- B. Lledo
- , A. Fuentes
- & A. Bernabeu
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| Open AccessPrevalence and characterisation of antimicrobial resistance genes and class 1 and 2 integrons in multiresistant Escherichia coli isolated from poultry production
- Przemysław Racewicz
- , Michał Majewski
- & Zofia E. Madeja
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| Open AccessGordonia species as a rare pathogen isolated from milk of dairy cows with mastitis
- Jaroslav Bzdil
- , Sona Slosarkova
- & Jan Matiasovic
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| Open AccessPhenotypic characterization and genome analysis of a novel Salmonella Typhimurium phage having unique tail fiber genes
- Sadia Sattar
- , Inam Ullah
- & Eric Altermann
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| Open AccessExtensive epigenetic modification with large-scale chromosomal and plasmid recombination characterise the Legionella longbeachae serogroup 1 genome
- Sandy Slow
- , Trevor Anderson
- & Patrick J. Biggs
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| Open AccessCharacterization of Escherichia coli harboring colibactin genes (clb) isolated from beef production and processing systems
- Manita Guragain
- , John W. Schmidt
- & Joseph M. Bosilevac
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| Open AccessOptimization of cerebrospinal fluid microbial DNA metagenomic sequencing diagnostics
- Josefin Olausson
- , Sofia Brunet
- & Ka-Wei Tang
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| Open AccessComparative pangenome analysis of capsulated Haemophilus influenzae serotype f highlights their high genomic stability
- Aida Gonzalez-Diaz
- , Anna Carrera-Salinas
- & Sara Marti
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| Open AccessBioinformatic and experimental characterization of SEN1998: a conserved gene carried by the Enterobacteriaceae-associated ROD21-like family of genomic islands
- Alejandro Piña-Iturbe
- , Guillermo Hoppe-Elsholz
- & Susan M. Bueno
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| Open AccessPlasmid-mediated colistin resistance and ESBL production in Escherichia coli from clinically healthy and sick pigs
- Suthathip Trongjit
- , Pornchalit Assavacheep
- & Rungtip Chuanchuen
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| Open AccessCharacterization and phylogenetic analysis of the complete mitochondrial genome of the pathogenic fungus Ilyonectria destructans
- Piotr Androsiuk
- , Adam Okorski
- & Agnieszka Pszczółkowska
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| Open AccessPPE51 mediates uptake of trehalose across the mycomembrane of Mycobacterium tuberculosis
- Mohammed Rizwan Babu Sait
- , Hendrik Koliwer-Brandl
- & Rainer Kalscheuer
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| Open AccessInsights and genetic features of extended-spectrum beta-lactamase producing Escherichia coli isolates from two hospitals in Ghana
- Samiratu Mahazu
- , Wakana Sato
- & Ryoichi Saito
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| Open AccessWhole-genome single nucleotide variant phylogenetic analysis of Mycobacterium tuberculosis Lineage 1 in endemic regions of Asia and Africa
- Thidarat Netikul
- , Yuttapong Thawornwattana
- & Prasit Palittapongarnpim
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| Open AccessProximity ligation strategy for the genomic reconstruction of microbial communities associated with the ectoparasite Caligus rogercresseyi
- Diego Valenzuela-Miranda
- , Ana Teresa Gonçalves
- & Cristian Gallardo-Escarate
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| Open AccessA novel subgenotype C6 Enterovirus A71 originating from the recombination between subgenotypes C4 and C2 strains in mainland China
- Yongjuan Liu
- , Jingyi Zhou
- & Shaolin Zhao
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| Open AccessThe NarX-NarL two-component system regulates biofilm formation, natural product biosynthesis, and host-associated survival in Burkholderia pseudomallei
- Mihnea R. Mangalea
- & Bradley R. Borlee
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| Open AccessDistribution and genome structures of temperate phages in acetic acid bacteria
- Koki Omata
- , Naruhiro Hibi
- & Hideaki Takano
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| Open AccessTranscriptomic analysis of Rhodococcus opacus R7 grown on polyethylene by RNA-seq
- Jessica Zampolli
- , Alessandro Orro
- & Patrizia Di Gennaro
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| Open AccessIdentification and genome analysis of a novel picornavirus from captive belugas (Delphinapterus leucas) in China
- Gaoyu Wang
- , Yi Huang
- & Feifei Yin
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| Open AccessPseudomonas aeruginosa transcriptome adaptations from colonization to biofilm infection of skin wounds
- Peter D’Arpa
- , S. L. Rajasekhar Karna
- & Kai P. Leung
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| Open AccessPeripheral blood microbial signatures in current and former smokers
- Jarrett D. Morrow
- , Peter J. Castaldi
- & Craig P. Hersh
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| Open AccessGenomic epidemiology of rifampicin ADP-ribosyltransferase (Arr) in the Bacteria domain
- Sergio Morgado
- , Érica Fonseca
- & Ana Carolina Vicente
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| Open AccessLeu-to-Phe substitution at prM146 decreases the growth ability of Zika virus and partially reduces its pathogenicity in mice
- Takuya Inagaki
- , Satoshi Taniguchi
- & Masayuki Saijo
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| Open AccessUsing fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screening
- Kertu Liis Krigul
- , Oliver Aasmets
- & Elin Org
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| Open AccessGenetic diversity of candidate loci linked to Mycobacterium tuberculosis resistance to bedaquiline, delamanid and pretomanid
- Paula J. Gómez-González
- , Joao Perdigao
- & Taane G. Clark
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| Open AccessReal-time PCR assays for detection and quantification of early P. falciparum gametocyte stages
- Amal A. H. Gadalla
- , Giulia Siciliano
- & Hamza A Babiker
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| Open AccessThe complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids
- Tue Kjærgaard Nielsen
- , Benjamin Horemans
- & Lars Hestbjerg Hansen
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| Open AccessComparative analysis of prophages carried by human and animal-associated Staphylococcus aureus strains spreading across the European regions
- Romen Singh Naorem
- , Gunajit Goswami
- & Csaba Fekete
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| Open AccessMicrobial community of soda Lake Van as obtained from direct and enriched water, sediment and fish samples
- Esra Ersoy Omeroglu
- , Mert Sudagidan
- & Veli Cengiz Ozalp
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| Open AccessDynamics of SARS-CoV-2 mutations reveals regional-specificity and similar trends of N501 and high-frequency mutation N501Y in different levels of control measures
- Santiago Justo Arevalo
- , Daniela Zapata Sifuentes
- & Roberto Pineda Chavarría
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| Open AccessNanopore sequencing and de novo assembly of a misidentified Camelpox vaccine reveals putative epigenetic modifications and alternate protein signal peptides
- Zack Saud
- , Matthew D. Hitchings
- & Tariq M. Butt
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| Open AccessWhole genome sequencing reveals possible host species adaptation of Streptococcus dysgalactiae
- Davide Porcellato
- , Marit Smistad
- & Oddvar Oppegaard
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| Open AccessMultilocus sequence analysis reveals genetic diversity in Staphylococcus aureus isolate of goat with mastitis persistent after treatment with enrofloxacin
- Richard Costa Polveiro
- , Manuela Maria Cavalcante Granja
- & Maria Aparecida Scatamburlo Moreira
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| Open AccessGenetic diversity and population structure of Alternaria species from tomato and potato in North Carolina and Wisconsin
- Tika B. Adhikari
- , Norman Muzhinji
- & Frank J. Louws
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| Open AccessImpact of viral features, host jumps and phylogeography on the rapid evolution of Aleutian mink disease virus (AMDV)
- Giovanni Franzo
- , Matteo Legnardi
- & Claudia Maria Tucciarone
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| Open AccessNo species-level losses of s2m suggests critical role in replication of SARS-related coronaviruses
- Clément Gilbert
- & Torstein Tengs