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| Open AccessCap analogs with a hydrophobic photocleavable tag enable facile purification of fully capped mRNA with various cap structures
Removing immunogenic uncapped mRNA from transcribed mRNA can be challenging, but is critical in mRNA research and clinical applications such as vaccines. Here, authors develop hydrophobic photocaged tag-modified cap analogs, which can be used to separate capped mRNA from uncapped mRNA, with subsequent tag removal using photo-irradiation.
- Masahito Inagaki
- , Naoko Abe
- & Hiroshi Abe
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Article
| Open AccessA novel mechanism for the loss of mRNA activity in lipid nanoparticle delivery systems
Lipid nanoparticle delivery of mRNA vaccines has become of particular importance, however, mRNA stability is a major concern. Here, the authors report on a study of lipid impurity mRNA interactions using reverse phase ion pair HPLC to identify reactions which render the mRNA untranslatable, reducing vaccine efficiency.
- Meredith Packer
- , Dipendra Gyawali
- & Phil White
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Article
| Open AccessLarge scale enzyme based xenobiotic identification for exposomics
Humans are exposed to many xenobiotic chemicals, but identification of low abundance xenobiotic exposures is limited by a lack of authentic standards for xenobiotic metabolites. Here the authors develop methods for enzymatic generation of diverse xenobiotic metabolites for use with high-resolution mass spectrometry for biology-based chemical identification.
- Ken H. Liu
- , Choon M. Lee
- & Dean P. Jones
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Article
| Open AccessRetention time prediction using neural networks increases identifications in crosslinking mass spectrometry
Predicting chromatographic retention times (RTs) has proven beneficial in proteomics but has not yet been achieved for crosslinked peptides. Here, the authors develop an RT prediction tool for crosslinked peptides and leverage predicted RTs to increase identifications in crosslinking mass spectrometry studies.
- Sven H. Giese
- , Ludwig R. Sinn
- & Juri Rappsilber
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Article
| Open AccessRobust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC–MS/MS
Mass spectrometry-based proteomics typically relies on highly sensitive nano-flow liquid chromatography (LC) but this can reduce robustness and reproducibility. Here, the authors show that micro-flow LC enables robust and reproducible high-throughput proteomics experiments at a very moderate loss of sensitivity.
- Yangyang Bian
- , Runsheng Zheng
- & Bernhard Kuster
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Article
| Open AccessPaf1 and Ctr9 subcomplex formation is essential for Paf1 complex assembly and functional regulation
The evolutionarily conserved multifunctional polymerase-associated factor 1 (Paf1) complex plays an essential role in gene regulation. Here, the authors report two structures of the human and yeast Ctr9/Paf1 subcomplexes, and find that this is essential for Paf1 complex assembly and function.
- Ying Xie
- , Minying Zheng
- & Jiafu Long