Ecology articles within Nature Communications

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  • Article |

    Free-ranging domestic cats cause wildlife extinctions on islands, but their impact on wildlife in mainland areas is unclear. This study presents an estimate of mortality caused by cats in the United States, suggesting that 1.4–3.7 billion birds and 6.9–20.7 billion mammals are killed annually.

    • Scott R. Loss
    • , Tom Will
    •  & Peter P. Marra
  • Article |

    A nested pattern of interactions is thought to promote species persistence in mutualistic ecological networks. In this study, Staniczenko et al. introduce a spectral graph measure of nestedness, to show that nestedness is maximally destabilizing and demonstrate that empirical species preferences are not quantitatively nested.

    • Phillip P. A. Staniczenko
    • , Jason C. Kopp
    •  & Stefano Allesina
  • Article
    | Open Access

    Tree diversity is thought to benefit forest ecosystems, but evidence from large-scale studies is scarce. This study of a 400,000 km2forest area shows that higher tree species richness supports higher levels of multiple ecosystem services, and therefore also a more sustainable management of production forests.

    • Lars Gamfeldt
    • , Tord Snäll
    •  & Jan Bengtsson
  • Article |

    The rise of open-habitat ecosystems in southern South America is thought to have occurred with the spread of hypsodont mammals 26 million years ago. In this study, the fossil record of plants preserved in Patagonia suggests that open-habitat ecosystems emerged 15 million years later than previously assumed.

    • Luis Palazzesi
    •  & Viviana Barreda
  • Article |

    The functioning of bacterial communities is affected by selection, but the role of predation by single or multiple predators is unclear. In a study of 465 bacterial microcosms, Saleem et al.find that multiple predation causes positive bacterial diversity effects due to increased evenness among bacterial species.

    • Muhammad Saleem
    • , Ingo Fetzer
    •  & Antonis Chatzinotas
  • Article |

    Knowledge of how a disease spreads can lead to useful predictions to help manage and contain it. Here, Maher et al.model white-nose syndrome spreading in North American bats, and show that concentrated habitat distribution and longer winters can mediate pathogen dispersal, matching the ecological traits of bats.

    • Sean P. Maher
    • , Andrew M. Kramer
    •  & John M. Drake
  • Article |

    In Müllerian mimicry two or more harmful species share a similar appearance for mutual benefit. This study identifies a large Müllerian mimicry complex in North American velvet ants, where 65 species mimic each other through shared colour patterns gained as the result of independent evolution.

    • Joseph S. Wilson
    • , Kevin A. Williams
    •  & James P. Pitts
  • Article |

    Rivers receive more terrestrial carbon than they transport to the ocean, leaving carbon stored along the way. Here, with an estimate of carbon storage in the headwater rivers of the Rocky Mountains, the authors show that broad valley bottoms with old-growth forest store most of the above- and below-ground carbon.

    • Ellen Wohl
    • , Kathleen Dwire
    •  & Roberto Bazan
  • Article |

    Microbes appear to play an important role in carbon sequestration. Here, the composition of microbial residues in a California grassland with elevated carbon dioxide, warming and nitrogen deposition reveals that warming and nitrogen deposition can both alter the fraction of carbon derived from microbes in soils.

    • Chao Liang
    •  & Teri C. Balser
  • Article |

    Human influence on an ecosystem generates a predictable pattern in biodiversity. In a study of boreal plant communities, Mayoret al.show that the species richness of native vascular plants fits the predicted hump-shaped relationship to human disturbance, reaching a maximum when half of the landscape is disturbed.

    • S.J. Mayor
    • , J.F. Cahill Jr
    •  & S. Boutin
  • Article |

    It has been proposed that phylogenetic diversity can be used as a proxy to estimate functional diversity and to predict ecosystem functioning. Here, the rapid evolutionary response of marine bacteria is used to study the positive effects of evolutionary history and species diversity on ecosystem productivity.

    • Dominique Gravel
    • , Thomas Bell
    •  & Nicolas Mouquet
  • Article |

    Humans, with their opposable thumbs, are not the only species with tool-related morphological adaptations. This study shows that tool use in New Caledonian crows is facilitated by a straight bill, enabling a firm grip on tools, and an extremely wide binocular field, affording excellent visual feedback.

    • Jolyon Troscianko
    • , Auguste M.P. von Bayern
    •  & Graham R. Martin
  • Article |

    The analysis of food web properties under different environmental conditions informs us how the ecosystem functions. Here, Tunneyet al. use post-glacial lakes as model ecosystems to show how macroscopic patterns of food webs vary with changes in habitat and resource accessibility.

    • Tyler D. Tunney
    • , Kevin S. McCann
    •  & Brian J. Shuter
  • Article |

    Sex pheromones are used by adult members of a species to attract a mate. This study proposes that the larvae of the cotton leafwormSpodoptera littoralisare attracted to sex pheromones and prefer a food source containing it, suggesting an alternative use of the sex pheromone to trigger food search in caterpillars.

    • Erwan Poivet
    • , Kacem Rharrabe
    •  & Emmanuelle Jacquin-Joly
  • Article |

    Methane is an important anthropogenic greenhouse gas and is thought to be produced by industrial processes and prokaryotic methanogenic Archaea. In this study, the saprotrophic fungi,Basidiomycetes, is shown to produce methane in the absence of methanogenic Archaea.

    • Katharina Lenhart
    • , Michael Bunge
    •  & Frank Keppler
  • Article
    | Open Access

    Whether humans are the only animals with cultural behaviour remains an open question in behavioural research. Here, a network analysis of the social preferences among bottlenose dolphins in Shark Bay, Australia finds that tool-using dolphins prefer others like themselves, suggesting the presence of cultural behaviour.

    • Janet Mann
    • , Margaret A. Stanton
    •  & Lisa O. Singh
  • Article
    | Open Access

    Beringian mammoths were abundant 45,000 to 30,000 years ago, but then experienced a long decline in concert with changes in climate, habitat and human presence. This study uses14C dating to trace their spatio temporal pattern of extinction until the loss of final island populations about 4,000 years ago.

    • G.M. MacDonald
    • , D.W. Beilman
    •  & B. Van Valkenburgh
  • Article |

    Ecological factors impact cooperative and competitive behaviour, creating social conflict. Here, predictions from a game-theory model together with observations of Taiwan yuhinas—a joint-nesting species where group members are unrelated—show that these birds are more cooperative in unfavourable environmental conditions.

    • Sheng-Feng Shen
    • , Sandra L. Vehrencamp
    •  & Hsiao-Wei Yuan
  • Article
    | Open Access

    Catch certificates and eco-labels are used to control illegal fishing worldwide, however, independent control methods are needed. Here, gene-associated SNPs are used to assign individual marine fish back to their population of origin with high precision, with potential application for illegal fishing control.

    • Einar E. Nielsen
    • , Alessia Cariani
    •  & Gary R. Carvalho
  • Article
    | Open Access

    Fungus-growing ants cultivate fungi for food, but it is unclear whether single ant and fungal species are exclusive to one another. This study ofC. wheeleriants and their fungi shows that each ant species has been associated with a single fungal cultivar species for millions of years and that ant speciation coincides with shifts in fungal use.

    • Natasha J. Mehdiabadi
    • , Ulrich G. Mueller
    •  & Ted R. Schultz
  • Article
    | Open Access

    Vascular plants with root systems evolved in the mid-Palaeozoic with symbiotic fungi. Fieldet al. show that in contrast to non-vascular plants lacking roots, the efficiency of plant–fungal symbiosis increased for vascular plants with root systems as carbon dioxide levels declined in the mid-Palaeozoic.

    • Katie J. Field
    • , Duncan D. Cameron
    •  & David J. Beerling
  • Article |

    Dinosaurs became extinct 65 million years ago due to volcanism and a bolide impact, but whether their numbers were already declining is still not clear. This study calculates the morphological disparity of seven dinosaur subgroups, showing that at least some groups were in a long-term decline before the extinction.

    • Stephen L. Brusatte
    • , Richard J. Butler
    •  & Mark A. Norell
  • Article
    | Open Access

    The large virus family,Paramyxoviridae, includes several human and livestock viruses. This study, testing 119 bat and rodent species distributed globally, identifies novel putative paramyxovirus species, providing data with potential uses in predictions of the emergence of novel paramyxoviruses in humans and livestock.

    • Jan Felix Drexler
    • , Victor Max Corman
    •  & Christian Drosten
  • Article |

    A record of the daily light cycle in tropical regions is difficult to extract from biogenic marine carbonates such as shells. Here, the precise analysis of Sr/Ca ratios is shown in a cultivated giant clam shell, revealing variations that reflect the daily light cycle and the potential for future development of a proxy.

    • Yuji Sano
    • , Sayumi Kobayashi
    •  & Kenji Iwai
  • Article |

    Understanding the environmental controls of past wildfires is difficult due to the lack of records of weather or vegetation. This study shows, using cross-scale analysis, how power laws associated with fire-event time series can identify critical thresholds in landscape dynamics in a rapidly changing climate.

    • Donald McKenzie
    •  & Maureen C. Kennedy
  • Article |

    Empirical data suggest that species abundance distributions can have multiple modes, which is not predicted by existing theories. This study shows that the multimodal pattern is consistent with emergent neutrality, suggesting this theory could have a role in shaping natural communities.

    • Remi Vergnon
    • , Egbert H. van Nes
    •  & Marten Scheffer
  • Article
    | Open Access

    The Mid-Cayman Spreading Centre is an ultraslow-spreading mid-ocean ridge in the Caribbean. This study reveals two hydrothermal vent fields on the ridge, including high-temperature vents on an off-axis oceanic core complex where, similar to Mid-Atlantic vents, an alvinocaridid shrimp is common at both vent fields.

    • Douglas P. Connelly
    • , Jonathan T. Copley
    •  & Sally Wilcox
  • Article |

    The habitat where early humans, hominins, lived provides information about the early part of human evolution. In this study, sedimentological and stable carbon and oxygen isotope data suggest homininArdipithecus ramiduslived in a river-margin forest in a wooded grassland landscape at Aramis, Ethiopia.

    • M. Royhan Gani
    •  & Nahid D. Gani
  • Article |

    Human children use referential gestures such as showing, offering and pointing, which are thought to form the foundation of language skills. Here, evidence is provided of ravens (Corvus corax) using showing and offering to direct other's attention, as an example of referential gesturing in a non-primate lineage.

    • Simone Pika
    •  & Thomas Bugnyar
  • Article |

    The health benefits of massage therapy, like the reduction of stress, have so far only been shown in humans. This study uses modelling to demonstrate that, while visiting cleaner fish to have ectoparasites removed, the physical stimulation also acts to reduce stress in the coral reef fish,Ctenochaetus striatus.

    • Marta C. Soares
    • , Rui F. Oliveira
    •  & Redouan Bshary
  • Article |

    Peatlands are a sink for atmospheric carbon dioxide and make up a large soil carbon reservoir. Here, studies of the interaction between drainage and fire show that long-term carbon emissions will likely exceed rates of carbon uptake, reducing the northern peatland carbon sink.

    • M.R. Turetsky
    • , W.F. Donahue
    •  & B.W. Benscoter
  • Article |

    Small endothermic animals often drop their body temperature—a process known as heterothermy—to conserve energy. This study demonstrates heterothermy in king penguin chicks (Aptenodytes patagonicus), a finding unexpected for such large birds, but which may account for the chicks’ fasting capacity of five months.

    • Götz Eichhorn
    • , René Groscolas
    •  & Yves Handrich
  • Article |

    Many organisms are responding to a warming climate by shifts in spatial distribution. The poleward movement of silver hake,Merluccius bilinearis, over the last forty years is related to the position of the Gulf Stream and Atlantic meridional overturning circulation through changes in local bottom water temperature.

    • Janet A. Nye
    • , Terrence M. Joyce
    •  & Jason S. Link
  • Article
    | Open Access

    Dissolved organic matter, the main form of aquatic organic carbon, supports the aquatic food web and regulates light penetration in lakes. This study probes the main influences on the optical properties of dissolved organic matter in a global dataset of alpine and remote lakes revealing latitudinal trends.

    • N. Mladenov
    • , R. Sommaruga
    •  & I. Reche
  • Article |

    Why some species have evolved to produce sterile individuals working for the benefit of others has yet to be fully explained. Now, a mathematical model of the dynamics of insect colony foundation, growth and death shows that monogamy and haplodiploidy facilitate the evolution of this societal structure.

    • Lutz Fromhage
    •  & Hanna Kokko
  • Article |

    Through fine-root nutrient chemistry, it is possible to study ecosystem-scale biogeochemical cycling. Compiling data from 211 studies measuring nitrogen and phosphorus in plant roots, Yuanet al. find that tropical ecosystems are more phosphorous-limited than higher latitudes.

    • Z.Y. Yuan
    • , Han Y.H. Chen
    •  & Peter B. Reich
  • Article |

    Migratory segregation presents a hypothesized barrier to gene flow among seabirds, but its mechanisms are unclear. Rayneret al. find that migratory habitat specialization, associated with breeding asynchrony and philopatry, restricts gene flow between two seabird populations migrating across the Pacific Ocean.

    • Matt J. Rayner
    • , Mark E. Hauber
    •  & Scott A. Shaffer
  • Article |

    The cryptic Wood White butterflies,Leptidea sinapis and Leptidea reali, represent a model for the study of speciation. Dincă et al. use DNA and chromosome data to show that this group, in fact, consists of a triplet of species, a result that provides a new perspective on cryptic biodiversity.

    • Vlad Dincă
    • , Vladimir A. Lukhtanov
    •  & Roger Vila
  • Article
    | Open Access

    Global darkness from an asteroid impact 65.5 million years ago led to massive extinction of oceanic phytoplankton, but coastal groups survived. Ribeiroet al.revive coastal dinoflagellates after a century of dormancy, suggesting phytoplankton survived the extinction and helped restore photosynthesis in the ocean.

    • Sofia Ribeiro
    • , Terje Berge
    •  & Marianne Ellegaard
  • Article
    | Open Access

    Plasmids are present in many bacteria and are often transferred between different species causing horizontal gene transfer. By comparing the sequences of 25 plasmid DNA backbones, the authors show that homologous recombination is prevalent in plasmids and that the plasmids have adapted to persist in different host bacteria.

    • Peter Norberg
    • , Maria Bergström
    •  & Malte Hermansson
  • Article
    | Open Access

    The presence of earthworms is known to enhance the quality and moisture of soil in cool and wet climates. Evanset al. show that termites and ants can improve soil quality in warmer and drier climates—their presence results in elevated water infiltration and nitrogen content, leading to increased wheat yields.

    • Theodore A. Evans
    • , Tracy Z. Dawes
    •  & Nathan Lo