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| Open AccessEmergence of a mutual-growth mechanism in networks evolved by social preference based on indirect utility
- Jong-Hyeok Lee
- & Ken-ichiro Ogawa
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| Open AccessTrehalose metabolism coordinates transcriptional regulatory control and metabolic requirements to trigger the onset of cassava storage root initiation
- Nattavat Sukko
- , Saowalak Kalapanulak
- & Treenut Saithong
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| Open AccessIntegrating glycolysis, citric acid cycle, pentose phosphate pathway, and fatty acid beta-oxidation into a single computational model
- Sylwester M. Kloska
- , Krzysztof Pałczyński
- & Tadeusz A. Wysocki
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| Open AccessStatistical control of structural networks with limited interventions to minimize cellular phenotypic diversity represented by point attractors
- Jongwan Kim
- , Corbin Hopper
- & Kwang-Hyun Cho
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| Open AccessAutomated monitoring of honey bees with barcodes and artificial intelligence reveals two distinct social networks from a single affiliative behavior
- Tim Gernat
- , Tobias Jagla
- & Gene E. Robinson
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| Open AccessHypergraph geometry reflects higher-order dynamics in protein interaction networks
- Kevin A. Murgas
- , Emil Saucan
- & Romeil Sandhu
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| Open AccessNetwork analysis reveals that the tumor suppressor lncRNA GAS5 acts as a double-edged sword in response to DNA damage in gastric cancer
- Shantanu Gupta
- , Pritam Kumar Panda
- & Rajeev Ahuja
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| Open AccessIntegrated network-based multiple computational analyses for identification of co-expressed candidate genes associated with neurological manifestations of COVID-19
- Suvojit Hazra
- , Alok Ghosh Chaudhuri
- & Nilkanta Chakrabarti
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| Open AccessDynamical modeling of miR-34a, miR-449a, and miR-16 reveals numerous DDR signaling pathways regulating senescence, autophagy, and apoptosis in HeLa cells
- Shantanu Gupta
- , Pritam Kumar Panda
- & Rajeev Ahuja
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| Open AccessQueueing theory model of pentose phosphate pathway
- Sylwester M. Kloska
- , Krzysztof Pałczyński
- & Tadeusz A. Wysocki
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| Open AccessMultiscale heterogeneous optimal lockdown control for COVID-19 using geographic information
- Cyrus Neary
- , Murat Cubuktepe
- & Ufuk Topcu
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| Open AccessRisk evaluation at municipality level of a COVID-19 outbreak incorporating relevant geographic data: the study case of Galicia
- Alejandro Carballosa
- , José Balsa-Barreiro
- & Alberto P. Muñuzuri
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| Open AccessAvian influenza transmission risk along live poultry trading networks in Bangladesh
- Natalie Moyen
- , Md. Ahasanul Hoque
- & Guillaume Fournié
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| Open AccessStepwise neuronal network pattern formation in agarose gel during cultivation using non-destructive microneedle photothermal microfabrication
- Yuhei Tanaka
- , Haruki Watanabe
- & Kenji Yasuda
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| Open AccessEmergent synchronous beating behavior in spontaneous beating cardiomyocyte clusters
- Kazufumi Sakamoto
- , Yoshitsune Hondo
- & Kenji Yasuda
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| Open AccessA top-down measure of gene-to-gene coordination for analyzing cell-to-cell variability
- Dana Vaknin
- , Guy Amit
- & Amir Bashan
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| Open AccessProtein interaction potential landscapes for yeast replicative aging
- Hao-Bo Guo
- , Mehran Ghafari
- & Hong Qin
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Article
| Open AccessLockdowns result in changes in human mobility which may impact the epidemiologic dynamics of SARS-CoV-2
- Nishant Kishore
- , Rebecca Kahn
- & Caroline O. Buckee
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| Open AccessOptimal control of the COVID-19 pandemic: controlled sanitary deconfinement in Portugal
- Cristiana J. Silva
- , Carla Cruz
- & Jorge Mira
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| Open AccessSubstrate and cell fusion influence on slime mold network dynamics
- Fernando Patino-Ramirez
- , Chloé Arson
- & Audrey Dussutour
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| Open AccessComponent response rate variation underlies the stability of highly complex finite systems
- A. Bradley Duthie
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| Open AccessExploring dynamic protein-protein interactions in cassava through the integrative interactome network
- Ratana Thanasomboon
- , Saowalak Kalapanulak
- & Treenut Saithong
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Article
| Open AccessAdaptive Landscape Shaped by Core Endogenous Network Coordinates Complex Early Progenitor Fate Commitments in Embryonic Pancreas
- Junqiang Wang
- , Ruoshi Yuan
- & Ping Ao
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| Open AccessNeural oscillations during cognitive processes in an App knock-in mouse model of Alzheimer’s disease pathology
- Sofia Jacob
- , Gethin Davies
- & Wilhelmus H.I.M. Drinkenburg
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Article
| Open AccessRestructuring of the ‘Macaronesia’ biogeographic unit: A marine multi-taxon biogeographical approach
- Rui Freitas
- , Maria Romeiras
- & Sérgio P. Ávila
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| Open AccessMinimal intervening control of biomolecular networks leading to a desired cellular state
- Sang-Mok Choo
- , Sang-Min Park
- & Kwang-Hyun Cho
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| Open AccessPhylostratigraphic analysis of gene co-expression network reveals the evolution of functional modules for ovarian cancer
- Luoyan Zhang
- , Yi Tan
- & Zhen Zhang
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| Open AccessLow-cost, high-impact altruistic punishment promotes cooperation cascades in human social networks
- Robert M. Bond
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| Open AccessGene target discovery with network analysis in Toxoplasma gondii
- Andres M. Alonso
- , Maria M. Corvi
- & Luis Diambra
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| Open AccessHope4Genes: a Hopfield-like class prediction algorithm for transcriptomic data
- Laura Cantini
- & Michele Caselle
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| Open AccessCharacterizing directed functional pathways in the visual system by multivariate nonlinear coherence of fMRI data
- Gadi Goelman
- , Rotem Dan
- & Tarek Keadan
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| Open AccessDetermining Relative Dynamic Stability of Cell States Using Boolean Network Model
- Jae Il Joo
- , Joseph X. Zhou
- & Kwang-Hyun Cho
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Article
| Open AccessModeling Transcriptional Rewiring in Neutrophils Through the Course of Treated Juvenile Idiopathic Arthritis
- Zihua Hu
- , Kaiyu Jiang
- & James N. Jarvis
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| Open AccessSelf-organisation of small-world networks by adaptive rewiring in response to graph diffusion
- Nicholas Jarman
- , Erik Steur
- & Cees van Leeuwen
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| Open AccessEffect of Correlations in Swarms on Collective Response
- David Mateo
- , Yoke Kong Kuan
- & Roland Bouffanais
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| Open AccessGlobal temporal dynamic landscape of pathogen-mediated subversion of Arabidopsis innate immunity
- Bharat Mishra
- , Yali Sun
- & M. Shahid Mukhtar
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| Open AccessSeabird distribution patterns observed with fishing vessel’s radar reveal previously undescribed sub-meso-scale clusters
- Camille Assali
- , Nicolas Bez
- & Yann Tremblay
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| Open AccessStructure Shapes Dynamics and Directionality in Diverse Brain Networks: Mathematical Principles and Empirical Confirmation in Three Species
- Joon-Young Moon
- , Junhyeok Kim
- & UnCheol Lee
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| Open AccessSimultaneously measuring multiple protein interactions and their correlations in a cell by Protein-interactome Footprinting
- Si-Wei Luo
- , Zhi Liang
- & Jia-Rui Wu
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| Open AccessContext-independent essential regulatory interactions for apoptosis and hypertrophy in the cardiac signaling network
- Jun Hyuk Kang
- , Ho-Sung Lee
- & Kwang-Hyun Cho
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| Open AccessA universal indicator of critical state transitions in noisy complex networked systems
- Junhao Liang
- , Yanqing Hu
- & Tianshou Zhou
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| Open AccessIntegration of microRNA and mRNA expression profiles in the skin of systemic sclerosis patients
- Bin Zhou
- , Xiao Xia Zuo
- & Hui Luo
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| Open AccessThe combination of the functionalities of feedback circuits is determinant for the attractors’ number and size in pathway-like Boolean networks
- Eugenio Azpeitia
- , Stalin Muñoz
- & Luis Mendoza
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| Open AccessPredicting Drug Combination Index and Simulating the Network-Regulation Dynamics by Mathematical Modeling of Drug-Targeted EGFR-ERK Signaling Pathway
- Lu Huang
- , Yuyang Jiang
- & Yuzong Chen
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| Open AccessGene network analysis identifies rumen epithelial cell proliferation, differentiation and metabolic pathways perturbed by diet and correlated with methane production
- Ruidong Xiang
- , Jody McNally
- & Brian P. Dalrymple
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| Open AccessLong-range synchrony and emergence of neural reentry
- Hanna Keren
- & Shimon Marom
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| Open AccessA network-based phenotype mapping approach to identify genes that modulate drug response phenotypes
- Junmei Cairns
- , Choong Yong Ung
- & Hu Li