Protocols in 2020

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  • Functional mouse hematopoietic stem cells (HSCs) are expanded 236- to 899-fold ex vivo using a fully defined albumin-free culture system. Clonal analysis of HSC heterogeneity and HSC transplantation are also described.

    • Adam C. Wilkinson
    • Reiko Ishida
    • Satoshi Yamazaki
    Protocol
  • This protocol manipulates the hydrophobicity of DNA and tailors its conformation at the water–oil interface on an organogel surface. Measuring the sliding speed or the critical sliding angle offers a droplet motion-based biosensing platform for the visual detection of small molecules, nucleic acids and proteins.

    • Zhong Feng Gao
    • Rui Liu
    • Lei Jiang
    Protocol
  • Here, the authors present standardized computational pipelines tailored specifically to the analysis of cancer genome sequencing data from mice. The protocol enables detection of single-nucleotide variants, indels, copy-number variations, loss of heterozygosity and complex rearrangements such as those of chromothripsis.

    • Sebastian Lange
    • Thomas Engleitner
    • Roland Rad
    Protocol