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Volume 533 Issue 7602, 12 May 2016

Pampas de San Juan de Miraflores, a poor peri-urban shanty town in Lima, Peru. Mapping the distribution and dissemination of antibiotic resistance genes is a public health priority. Gautam Dantas and colleagues have characterized the bacterial community structure and resistance gene exchange networks from two low-income Latin American communities � a rural village of subsistence farmers 35 km south of San Salvador, El Salvador and a shanty town in the desert hills about 15 km southwest of Lima, Peru. Using functional genomics and whole-metagenome sequencing of hundreds of interconnected human faecal and environmental samples, the authors find that resistomes across habitats are generally structured by bacterial phylogeny along ecological gradients, but that key resistance genes can cross these boundaries. They also assess the usefulness of excreta management protocols in the prevention of resistance gene dissemination. Collectively, this work lays the foundation for quantitative risk assessment and surveillance of antibiotic resistance gene transmission across diverse environments. Cover: Sebastian Castada/Anadolu Agency/Getty Images

Editorial

  • The safe use of medicines during breastfeeding is not an easy topic to study, but new parents deserve better information on the risks and benefits.

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  • Scientists should unite over electronic-cigarette regulation, or big tobacco will step in.

    Editorial
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Seven Days

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Correction

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Comment

  • Studies of human development in vitro are on a collision course with an international policy that limits embryo research to the first two weeks of development, warn Insoo Hyun, Amy Wilkerson and Josephine Johnston.

    • Insoo Hyun
    • Amy Wilkerson
    • Josephine Johnston
    Comment
  • Klaas-Douwe B. Dijkstra has named a new dragonfly after David Attenborough to mark the broadcaster's 90th birthday — and to honour the importance of knowing the natural world.

    • Klaas-Douwe B. Dijkstra
    Comment
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Books & Arts

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Correspondence

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News & Views

  • The early stages of human development are normally hidden within the womb, but improved techniques for culturing embryos from the blastocyst stage promise to make these steps easier to investigate. See Letter p.251

    • Janet Rossant
    News & Views
  • If organic molecules were trees, then the numerous carbon–hydrogen bonds within them would be leaves. A catalyst that targets one 'leaf' out of many similar other ones looks set to be a huge leap for synthetic chemistry. See Letter p.230

    • Kin S. Yang
    • Keary M. Engle
    News & Views
  • Ashes of ancient meteors recovered from a 2.7-billion-year-old lake bed imply that the upper atmosphere was rich in oxygen at a time when all other evidence implies that the atmosphere was oxygen-free. See Letter p.235

    • Kevin Zahnle
    • Roger Buick
    News & Views
  • Emergent quanta of momentum and charge, called quasiparticles, govern many of the properties of materials. The development of a quasiparticle collider promises to reveal fundamental insights into these peculiar entities. See Letter p.225

    • Dirk van der Marel
    News & Views
  • Describing the motion of three or more bodies under the influence of gravity is one of the toughest problems in astronomy. The report of solutions to a large subclass of the four-body problem is truly remarkable.

    • Douglas P. Hamilton
    News & Views
  • Analysis of a sensory neural circuit in the roundworm Caenorhabditis elegans reveals that its wiring is sex-specific, and arises through the elimination of connections that are originally formed in both sexes. See Article p.206

    • Douglas S. Portman
    News & Views
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Review Article

  • Palaeoclimatic evidence of monsoon rainfall dynamics across different regions and timescales suggests that monsoon systems exhibit substantial regional variation; meridional temperature gradients are a major driver of monsoon variability, but these gradients are influenced by other, interacting forcing mechanisms, making predictions of future changes in monsoon rainfall highly uncertain.

    • Mahyar Mohtadi
    • Matthias Prange
    • Stephan Steinke
    Review Article
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Article

  • The genome sequence is presented for the Atlantic salmon (Salmo salar), providing information about a rediploidization following a salmonid-specific whole-genome duplication event that resulted in an autotetraploidization.

    • Sigbjørn Lien
    • Ben F. Koop
    • William S. Davidson
    Article Open Access
  • How sex-specific neuronal circuits are generated during development is poorly understood; here, sensory neurons are identified in the round worm Caenorhabditis elegans, which initially connect in both male- and hermaphrodite-specific patterns, but a specific subset of these connections is pruned by each sex upon sexual maturation to produce sex-specific connectivity patterns and dimorphic behaviours.

    • Meital Oren-Suissa
    • Emily A. Bayer
    • Oliver Hobert
    Article
  • An analysis of bacterial community structure and antibiotic resistance gene content of interconnected human faecal and environmental samples from two low-income communities in Latin America was carried out using a combination of functional metagenomics, 16S sequencing and shotgun sequencing; resistomes across habitats are generally structured along ecological gradients, but key resistance genes can cross these boundaries, and the authors assessed the usefulness of excreta management protocols in the prevention of resistance gene dissemination.

    • Erica C. Pehrsson
    • Pablo Tsukayama
    • Gautam Dantas
    Article
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Letter

  • Infrared interferometry imaging of the old, magnetically active star ζ Andromedae reveals an asymmetric distribution of starspots, unlike the north–south starspot symmetry observed on the Sun, meaning the underlying dynamo mechanisms must be different.

    • R. M. Roettenbacher
    • J. D. Monnier
    • L. Sturmann
    Letter
  • A quasiparticle collider is developed that uses femtosecond optical pulses to create electron–hole pairs in the layered dichalcogenide tungsten diselenide, and a strong terahertz field to accelerate and collide the electrons with the holes.

    • F. Langer
    • M. Hohenleutner
    • R. Huber
    Letter
  • The idea of carbon–hydrogen functionalization, in which C–H bonds are modified at will, represents a paradigm shift in the standard logic of organic synthesis; here, dirhodium catalysts are used to achieve highly site-selective, diastereoselective and enantioselective C–H functionalization of n-alkanes and terminally substituted n-alkyl compounds.

    • Kuangbiao Liao
    • Solymar Negretti
    • Huw M. L. Davies
    Letter
  • Evidence in support of low atmospheric oxygen concentrations on early Earth relates to the composition of the lower Archaean atmosphere; now the composition of fossil micrometeorites preserved in 2.7-billion-year-old rocks in Australia suggests that they were oxidized in an oxygen-rich Archaean upper atmosphere.

    • Andrew G. Tomkins
    • Lara Bowlt
    • Jeremy L. Wykes
    Letter
  • An in vitro model to study the early events that direct human embryo development after formation of the blastocyst and implantation in the uterine wall.

    • Alessia Deglincerti
    • Gist F. Croft
    • Ali H. Brivanlou
    Letter
  • Little is known about cooperative behaviour among the gut microbiota; here, limited cooperation is demonstrated for Bacteroides thetaiotaomicron, but Bacteroides ovatus is found to extracellularly digest a polysaccharide not for its own use, but to cooperatively feed other species such as Bacteroides vulgatus from which it receives return benefits.

    • Seth Rakoff-Nahoum
    • Kevin R. Foster
    • Laurie E. Comstock
    Letter
  • Phosphorylation of the anaphase-promoting complex (APC/C) allows for its control by the co-activator Cdc20; a mechanism that has relevance to understanding the control of other large multimeric complexes by phosphorylation.

    • Suyang Zhang
    • Leifu Chang
    • David Barford
    Letter
  • The structure of the core region of the mitochondrial calcium uniporter (MCU) is determined by NMR and electron microscopy, revealing that MCU is a homo-pentamer with a specific transmembrane helix forming a hydrophilic pore across the membrane, and representing one of the largest membrane protein structures characterized by NMR spectroscopy.

    • Kirill Oxenoid
    • Ying Dong
    • James J. Chou
    Letter
  • The X-ray crystal structure of the transmembrane portion of the human glucagon receptor, a class B G-protein-coupled receptor (GPCR), is solved in the presence of the antagonist MK-0893, with potential implications for the development of therapeutics that target other class B GPCRs.

    • Ali Jazayeri
    • Andrew S. Doré
    • Fiona H. Marshall
    Letter
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Futures

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Outlook

  • A growing appreciation that cooperation and competition can coexist is transforming the life-sciences innovation landscape. Development was once shrouded in secrecy, but now organizations are coming together.

    • David Holmes

    Nature Outlook:

    Outlook
  • Drug discovery is time-consuming and full of blind alleys. Pharmaceutical rivals are cooperating in the early stages to accelerate and improve the efficiency of the process.

    • Neil Savage

    Nature Outlook:

    Outlook
  • In 2006, pharmaceutical innovation consultant Bernard Munos helped to launch a lively public discussion about how open innovation can bring novel drugs to market with his paper 'Can opensource R&D reinvigorate drug research? He tells Nature how things have changed since then.

    • Eric Bender

    Nature Outlook:

    Outlook
  • In a pioneering move, the compound JQ1 was released to the community for free. The impact that this has had on research and development is slowly coming into focus.

    • Andrew R. Scott

    Nature Outlook:

    Outlook
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