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Volume 498 Issue 7454, 20 June 2013

When ice melts, the process usually starts around defects or near the surface, where the crystalline structure is relatively easily transformed into liquid water. Without such encouragement, spontaneous nucleation must take place inside homogenous bulk ice by thermal agitation, but the true mechanism of this phase transition at the molecular level is not well understood. Kenji Mochizuki and colleagues now present molecular dynamics simulations that identify the spatial separation of a defect pair into its constituent components as the crucial step. The initial formation of defect pairs occurs easily and often, but only after accidental disruption of the surrounding hydrogen-bond network and pair separation can defects persist and grow, rapidly turning ice into liquid water. Cover graphic illustrates the appearance of liquid water in the crystalline structure.

Editorial

  • A project to pool data and tools to calculate earthquake hazards is an important milestone, but it will be down to individuals to decide how to interpret and respond to those risks.

    Editorial

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  • DIY attempts at electrical brain stimulation to improve cognition are to get easier.

    Editorial
  • The US government gives up its fight to keep age restrictions on the morning-after pill.

    Editorial
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World View

  • The US Supreme Court ruling on gene patents is a welcome boost to efforts to increase the free exchange of scientific information, says Colin Macilwain.

    • Colin Macilwain
    World View
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Research Highlights

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Seven Days

  • The week in science: Opposition to Japanese ‘NIH’, funding for ExoMars, and endangered status for captive chimps.

    Seven Days
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News

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News Feature

  • D-Wave is pioneering a novel way of making quantum computers — but it is also courting controversy.

    • Nicola Jones
    News Feature
  • With earthquake death tolls rising, Ross Stein is building a global risk model to mitigate future disasters.

    • Joanne Baker
    News Feature
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Comment

  • To change attitudes towards energy scarcity and climate change, focus on transitions and solutions, not danger and loss, says Chris Nelder.

    • Chris Nelder
    Comment
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Books & Arts

  • Mark Winston revels in a deep exploration of the honeybee colony and its organization.

    • Mark L. Winston
    Books & Arts
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Correspondence

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Obituary

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News & Views Forum

  • An investigation of droplet freezing in clouds suggests that a minor component of mineral dust in the atmosphere is the main catalyst for this process. Two experts discuss the ramifications of this finding for those investigating cloud-droplet freezing, and for scientists studying atmospheric aerosols. See Letter p.355

    • Thomas Koop
    • Natalie Mahowald
    News & Views Forum
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News & Views

  • A study of wild capuchin monkeys that crack nuts using stone hammers reveals temporal and spatial patterning of the relics of their technological efforts, confirming that such behaviours can be studied from an archaeological perspective.

    • Andrew Whiten
    News & Views
  • That HIV cripples the immune system by killing CD4+ T cells has long been known. It now emerges that the protein DNA-PK, activated by viral integration into the host-cell genome, is the agent of this death response. See Letter p.376

    • Anna Marie Skalka
    News & Views
  • When biologists unravelled the principles of insect flight, they inspired a generation of engineers to build on their aerodynamic feats. Thanks to a revolution in micro-manufacturing techniques, the first robotic fly now flies.

    • David Lentink
    News & Views
  • The configurations of calcium nuclei make them good test cases for studies of nuclear properties. The measurement of the masses of two heavy calcium nuclei provides benchmarks for models of atomic nuclei. See Letter p.346

    • Alexandra Gade
    News & Views
  • The discovery that a disordered protein can transmit signals between two binding sites calls into question the idea that communication within proteins requires a specific structural pathway linking such sites. See Letter p.390

    • Vincent J. Hilser
    News & Views
  • The discovery of many new species of hepaciviruses and pegiviruses, which exhibit enormous genetic diversity, in wild rodent and bat populations might help us to understand the origins of the hepatitis C virus.

    • Oliver G. Pybus
    • Rebecca R. Gray
    News & Views
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Article

  • Realizing holographic video displays is proving far from straightforward, but it is shown here that it may be possible to overcome the limitations of present displays by harnessing the desirable optical manipulation properties of anisotropic leaky-mode spatial light modulators.

    • D. E. Smalley
    • Q. Y. J. Smithwick
    • S. Jolly
    Article
  • This study identifies a deubiquitinase (DUB) that specifically recognises and cleaves linear ubiquitin chains, implicating linear (de)ubiquitination in Wnt signalling and angiogenesis; mutations in gumby cause defects in angiogenesis in mice, and structural and biochemical analysis shows that gumby encodes a linear-ubiquitin-specific DUB.

    • Elena Rivkin
    • Stephanie M. Almeida
    • Sabine P. Cordes
    Article
  • Cytosolic DNA arising from intracellular bacterial or viral infections induces type I interferon through activation of the DNA sensor cGAS, which catalyses the synthesis of cyclic dinucleotide which in turn activates STING; here the crystal structures of a carboxy-terminal fragment of cGAS alone and in complex with UTP and DNA–ATP–GTP complex are determined.

    • Filiz Civril
    • Tobias Deimling
    • Karl-Peter Hopfner
    Article
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Letter

  • The compositions of the 3.7-billion-year-old surface rocks on Mars — as observed by the Spirit rover at Gusev crater — are shown to be consistent with early mixing of oxidized surface material into the uppermost Martian mantle: such oxidation appears to have had less influence on more recent volcanic rocks, which are sampled as Martian meteorites.

    • J. Tuff
    • J. Wade
    • B. J. Wood
    Letter
  • The masses of the exotic calcium isotopes 53Ca and 54Ca measured by a multi-reflection time-of-flight method confirm predictions of calculations including nuclear three-body interactions.

    • F. Wienholtz
    • D. Beck
    • K. Zuber
    Letter
  • Molecular dynamics simulations of melting ice have identified the spatial separation of a defect pair into its constituent components as a crucial first step: once this step has been taken, defects can persist and grow, and rapidly turn ice into liquid water.

    • Kenji Mochizuki
    • Masakazu Matsumoto
    • Iwao Ohmine
    Letter
  • Microbial sequencing of samples obtained from multiple skin sites in healthy human adults shows that core-body and arm sites are dominated by fungal species of the genus Malassezia, whereas foot sites show high fungal diversity, and that skin topography is associated with differential compositions of bacterial and fungal communities.

    • Keisha Findley
    • Julia Oh
    • Julia A. Segre
    Letter
  • Two-photon intravital imaging is used here to define the regulation of interstitial neutrophil migration at local sites of cell death upon sterile tissue injury and infection; leukotriene B4 (LTB4) is shown to act between neutrophils as a signal relay molecule that acts to enhance the radius of neutrophil recruitment within the inflamed interstitium, and also to control, in concert with integrin receptors, dense neutrophil clustering for tight wound seal formation.

    • Tim Lämmermann
    • Philippe V. Afonso
    • Ronald N. Germain
    Letter
  • In Arabidopsis, RNA-directed DNA methylation is a poorly understood gene silencing pathway in which small interfering RNAs generated by RNA polymerase IV (Pol-IV) target a DNA methyltransferase to its sites of action; here structural and genomic analyses demonstrate that SHH binds chromatin via repressive histone modifications and recruits Pol-IV to enable siRNA production.

    • Julie A. Law
    • Jiamu Du
    • Steven E. Jacobsen
    Letter
  • Single-molecule FRET is used to examine how an intrinsically disordered protein, the adenovirus E1A oncoprotein, interacts with two different protein partners (the pocket domain of pRb and the TAZ2 domain of CBP/p300); the biophysical behaviour of E1A depends on whether the N-terminal region and/or the CR2 region of E1A is free to interact with potential protein partners or whether they are ‘masked’ (that is, via their absence or a pre-existing interaction with another protein partner).

    • Allan Chris M. Ferreon
    • Josephine C. Ferreon
    • Ashok A. Deniz
    Letter
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Feature

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Column

  • Sometimes the best outreach happens when lay people stumble over research unawares, says Carolyn Beans.

    • Carolyn Beans
    Column
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Futures

  • Contact has been made.

    • John Grant
    Futures
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