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Artificial intelligence methods to estimate overall mortality and non-relapse mortality following allogeneic HCT in the modern era: an EBMT-TCWP study

Abstract

Allogeneic haematopoietic cell transplantation (alloHCT) has curative potential counterbalanced by its toxicity. Prognostic scores fail to include current era patients and alternative donors. We examined adult patients from the EBMT registry who underwent alloHCT between 2010 and 2019 for oncohaematological disease. Our primary objective was to develop a new prognostic score for overall mortality (OM), with a secondary objective of predicting non-relapse mortality (NRM) using the OM score. AI techniques were employed. The model for OM was trained, optimized, and validated using 70%, 15%, and 15% of the data set, respectively. The top models, “gradient boosting” for OM (AUC = 0.64) and “elasticnet” for NRM (AUC = 0.62), were selected. The analysis included 33,927 patients. In the final prognostic model, patients with the lowest score had a 2-year OM and NRM of 18 and 13%, respectively, while those with the highest score had a 2-year OM and NRM of 82 and 93%, respectively. The results were consistent in the subset of the haploidentical cohort (n = 4386). Our score effectively stratifies the risk of OM and NRM in the current era but do not significantly improve mortality prediction. Future prognostic scores can benefit from identifying biological or dynamic markers post alloHCT.

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Fig. 1: Overall mortality and non-relapse mortality of the whole cohort.
Fig. 2: Receiving operator curve (ROC) for overall mortality.
Fig. 3: Overall mortality stratification.

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The study data belong to the EBMT and may be requested through previous authorization.

References

  1. Cieri N, Maurer K, Wu CJ. 60 Years Young: The Evolving Role of Allogeneic Hematopoietic Stem Cell Transplantation in Cancer Immunotherapy. Cancer Res. 2021;81:4373–84.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Snowden JA, Sánchez-Ortega I, Corbacioglu S, Basak GW, Chabannon C, de la Camara R, et al. Indications for haematopoietic cell transplantation for haematological diseases, solid tumours and immune disorders: current practice in Europe, 2022. Bone Marrow Transplant [Internet]. 2022 May [cited 2022 Jul 25]; Available from: https://www.nature.com/articles/s41409-022-01691-w

  3. Passweg JR, Baldomero H, Chabannon C, Basak GW, de la Cámara R, Corbacioglu S, et al. Hematopoietic cell transplantation and cellular therapy survey of the EBMT: monitoring of activities and trends over 30 years. Bone Marrow Transpl. 2021;56:1651–64.

    Article  Google Scholar 

  4. McDonald GB, Sandmaier BM, Mielcarek M, Sorror M, Pergam SA, Cheng GS, et al. Survival, Nonrelapse Mortality, and Relapse-Related Mortality After Allogeneic Hematopoietic Cell Transplantation: Comparing 2003–2007 Versus 2013–2017 Cohorts. Ann Intern Med. 2020;172:229.

    Article  PubMed  PubMed Central  Google Scholar 

  5. Armand P, Kim HT, Logan BR, Wang Z, Alyea EP, Kalaycio ME, et al. Validation and refinement of the Disease Risk Index for allogeneic stem cell transplantation. Blood. 2014;123:3664–71.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Papaemmanuil E, Gerstung M, Bullinger L, Gaidzik VI, Paschka P, Roberts ND, et al. Genomic Classification and Prognosis in Acute Myeloid Leukemia. N. Engl J Med. 2016;374:2209–21.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Della Porta MG, Gallì A, Bacigalupo A, Zibellini S, Bernardi M, Rizzo E, et al. Clinical Effects of Driver Somatic Mutations on the Outcomes of Patients With Myelodysplastic Syndromes Treated With Allogeneic Hematopoietic Stem-Cell Transplantation. JCO. 2016;34:3627–37.

    Article  Google Scholar 

  8. Sorror ML, Maris MB, Storb R, Baron F, Sandmaier BM, Maloney DG, et al. Hematopoietic cell transplantation (HCT)-specific comorbidity index: a new tool for risk assessment before allogeneic HCT. Blood. 2005;106:2912–9.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Gratwohl A. The EBMT risk score. Bone Marrow Transpl. 2012;47:749–56.

    Article  CAS  Google Scholar 

  10. Sorror ML, Storb RF, Sandmaier BM, Maziarz RT, Pulsipher MA, Maris MB, et al. Comorbidity-Age Index: A Clinical Measure of Biologic Age Before Allogeneic Hematopoietic Cell Transplantation. JCO. 2014;32:3249–56.

    Article  Google Scholar 

  11. Barba P, Martino R, Pérez-Simón JA, Fernández-Avilés F, Castillo N, Piñana JL, et al. Combination of the Hematopoietic Cell Transplantation Comorbidity Index and the European Group for Blood and Marrow Transplantation Score Allows a Better Stratification of High-Risk Patients Undergoing Reduced-Toxicity Allogeneic Hematopoietic Cell Transplantation. Biol Blood Marrow Transplant. 2014;20:66–72.

    Article  PubMed  Google Scholar 

  12. Parimon T, Au DH, Martin PJ, Chien JW. A Risk Score for Mortality after Allogeneic Hematopoietic Cell Transplantation. Ann Intern Med. 2006;144:407.

    Article  PubMed  Google Scholar 

  13. Luft T, Benner A, Terzer T, Jodele S, Dandoy CE, Storb R, et al. EASIX and mortality after allogeneic stem cell transplantation. Bone Marrow Transpl. 2020;55:553–61.

    Article  CAS  Google Scholar 

  14. Shouval R, Labopin M, Bondi O, Mishan-Shamay H, Shimoni A, Ciceri F, et al. Prediction of Allogeneic Hematopoietic Stem-Cell Transplantation Mortality 100 Days After Transplantation Using a Machine Learning Algorithm: A European Group for Blood and Marrow Transplantation Acute Leukemia Working Party Retrospective Data Mining Study. JCO. 2015;33:3144–51.

    Article  Google Scholar 

  15. Salas MQ, Atenafu EG, Bascom O, Wilson L, Lam W, Law AD, et al. Pilot prospective study of Frailty and Functionality in routine clinical assessment in allogeneic hematopoietic cell transplantation. Bone Marrow Transpl. 2021;56:60–9.

    Article  CAS  Google Scholar 

  16. Shouval R, Fein JA, Shouval A, Danylesko I, Shem-Tov N, Zlotnik M, et al. External validation and comparison of multiple prognostic scores in allogeneic hematopoietic stem cell transplantation. Blood Adv. 2019;3:1881–90.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Bacigalupo A, Ballen K, Rizzo D, Giralt S, Lazarus H, Ho V, et al. Defining the Intensity of Conditioning Regimens: Working Definitions. Biol Blood Marrow Transplant. 2009;151628–33.

    Article  PubMed  PubMed Central  Google Scholar 

  18. Penack O, Peczynski C, Mohty M, Yakoub-Agha I, de la Camara R, Glass B, et al. Association of pre-existing comorbidities with outcome of allogeneic hematopoietic cell transplantation. A retrospective analysis from the EBMT. Bone Marrow Transpl. 2022;57:183–90.

    Article  CAS  Google Scholar 

  19. Iacobelli S, On behalf of the EBMT Statistical Committee. Suggestions on the use of statistical methodologies in studies of the European Group for Blood and Marrow Transplantation. Bone Marrow Transpl. 2013;48:S1–37.

    Article  Google Scholar 

  20. Domínguez-Almendros S, Benítez-Parejo N, Gonzalez-Ramirez AR. Logistic regression models. Allergologia et Immunopathologia. 2011;39:295–305.

    Article  PubMed  Google Scholar 

  21. Yamashita T, Yamashita K, Kamimura R. A Stepwise AIC Method for Variable Selection in Linear Regression. Commun Stat - Theory Methods. 2007;36:2395–403.

    Article  MathSciNet  Google Scholar 

  22. Cortes C, Vapnik V. Support-vector networks. Mach Learn. 1995;20:273–97.

    Article  Google Scholar 

  23. Chen T, Guestrin C XGBoost: A Scalable Tree Boosting System. In: Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining [Internet]. San Francisco California USA: ACM; 2016 [cited 2023 Jul 14]. p. 785–94. Available from: https://doi.org/10.1145/2939672.2939785.

  24. Friedman J, Hastie T, Tibshirani R Regularization Paths for Generalized Linear Models via Coordinate Descent. J Stat Soft [Internet]. 2010 [cited 2023 Jul 14];33. Available from: http://www.jstatsoft.org/v33/i01/.

  25. R Core Team. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2021. http://www.R-project.org/.

    Google Scholar 

  26. Charlson ME, Pompei P, Ales KL, MacKenzie CR. A new method of classifying prognostic comorbidity in longitudinal studies: Development and validation. J Chronic Dis. 1987;40:373–83.

    Article  CAS  PubMed  Google Scholar 

  27. Sorror ML. How I assess comorbidities before hematopoietic cell transplantation. Blood. 2013;121:2854–63.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Vaughn JE, Storer BE, Armand P, Raimondi R, Gibson C, Rambaldi A, et al. Design and Validation of an Augmented Hematopoietic Cell Transplantation-Comorbidity Index Comprising Pretransplant Ferritin, Albumin, and Platelet Count for Prediction of Outcomes after Allogeneic Transplantation. Biol Blood Marrow Transplant. 2015;21:1418–24.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Potdar R, Varadi G, Fein J, Labopin M, Nagler A, Shouval R. Prognostic Scoring Systems in Allogeneic Hematopoietic Stem Cell Transplantation: Where Do We Stand? Biol Blood Marrow Transplant. 2017;23:1839–46.

    Article  PubMed  Google Scholar 

  30. Luznik L, O’Donnell PV, Symons HJ, Chen AR, Leffell MS, Zahurak M, et al. HLA-haploidentical bone marrow transplantation for hematologic malignancies using nonmyeloablative conditioning and high-dose, posttransplantation cyclophosphamide. Biol Blood Marrow Transpl. 2008;14(Jun):641–50.

    Article  CAS  Google Scholar 

  31. Holmes HM, Des Bordes JKA, Kebriaei P, Yennu S, Champlin RE, Giralt S, et al. Optimal screening for geriatric assessment in older allogeneic hematopoietic cell transplantation candidates. J Geriatr Oncol. 2014;5:422–30.

    Article  PubMed  PubMed Central  Google Scholar 

  32. Peña M, Salas MQ, Mussetti A, Moreno-Gonzalez G, Bosch A, Patiño B, et al. Pretransplantation EASIX predicts intensive care unit admission in allogeneic hematopoietic cell transplantation. Blood Adv. 2021;5:3418–26.

    Article  PubMed  PubMed Central  Google Scholar 

  33. Nitski O, Azhie A, Qazi-Arisar FA, Wang X, Ma S, Lilly L, et al. Long-term mortality risk stratification of liver transplant recipients: real-time application of deep learning algorithms on longitudinal data. Lancet Digital Health. 2021;3:e295–305.

    Article  CAS  PubMed  Google Scholar 

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Authors and Affiliations

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MA, RSB, SA were responsible for the overall research questions and design of the study. RSB, MV, GJE performed the statistical analyses. MA, RSB wrote the original draft. PC, GJE, PE, KN, BD, PLR, KA, MA, SM, HRM, BM, SU, SH, FE, PU, RP, AE, CP, YAI, CC, CF, ST, AM, KC, MI, PO, SH, MM, GB, BG, PZ reviewed and revised the manuscript. All authors read and approved the final manuscript.

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Correspondence to A. Mussetti.

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Mussetti, A., Rius-Sansalvador, B., Moreno, V. et al. Artificial intelligence methods to estimate overall mortality and non-relapse mortality following allogeneic HCT in the modern era: an EBMT-TCWP study. Bone Marrow Transplant 59, 232–238 (2024). https://doi.org/10.1038/s41409-023-02147-5

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