Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Uridine-33 in yeast tRNA not essential for amber suppression

Abstract

The nucleotide at position 33 on the 5′ side of the anticodon of almost all tRNAs is a uridine1. Crystallographic studies of different tRNAs2–6 reveal that although the precise orientation of uridine-33 is not always the same, it connects the anticodon stacked along the 3′ side of the loop with the pyrimidine-32 stacked on the 5′ side of the loop. The remarkably conserved nature of uridine-33 and its unique position in the anticodon loop structure has led to suggestions6–8 that this nucleotide has an essential role in the translational mechanism. We have developed a biochemical procedure to replace nucleotides 33–35 in yeast tRNATyr with any desired sequence and used it to construct amber suppressor tRNAs having different nucleotides at position 33. As all of these synthetic amber suppressor tRNAs functioned well in eukaryotic in vitro suppression assays, we conclude that uridine-33 does not have an obligatory role in the translation mechanism.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Singhal, R. P. & Fallis, P. A. M. Prog. Nucleic Acid Res. molec. Biol. 23, 228–290 (1979).

    Google Scholar 

  2. Quigley, G. J. & Rich, A. Science 194, 796–80 (1976).

  3. Ladner, J. E. et al. Nucleic Acids Res. 2, 1629–1637 (1975).

    Article  CAS  Google Scholar 

  4. Moras, D. et al. Nature 288, 669–673 (1980).

    Article  ADS  CAS  Google Scholar 

  5. Schevitz, R. W. et al. Nature 278, 188–190 (1979).

    Article  ADS  CAS  Google Scholar 

  6. Woo, N. H., Roe, B. A. & Rich, A. Nature 286, 346–351 (1980).

    Article  ADS  CAS  Google Scholar 

  7. Lake, J. A. Proc. natn. Acad. Sci. U.S.A. 74, 1903–1907 (1977).

    Article  ADS  CAS  Google Scholar 

  8. Bossi, L. & Roth, J. R. Nature 286, 123–127 (1980).

    Article  ADS  CAS  Google Scholar 

  9. Bruce, A. G. & Uhlenbeck, O. C. Biochemistry 21, 855–861 (1982).

    Article  CAS  Google Scholar 

  10. Soltis, D. A. & Uhlenbeck, O. C. J. biol. Chem. 257, 11332–11339 (1982).

    CAS  PubMed  Google Scholar 

  11. Piper, P. W. et al. Nature 262, 757–761 (1976).

    Article  ADS  CAS  Google Scholar 

  12. Atkins, J. F., Lewis, J. B., Anderson, C. W. & Gesteland, R. F. J. biol. Chem. 250, 5688–5695 (1975).

    CAS  PubMed  Google Scholar 

  13. Gesteland, R. et al. Cell 7, 381–390 (1976).

    Article  CAS  Google Scholar 

  14. Dasgupta, R., Ahlquist, P. & Kaesberg, P. Virology 104, 339–346 (1980).

    Article  CAS  Google Scholar 

  15. Johnson, P. F. & Ableson, J. Nature 302, 681–687 (1983).

    Article  ADS  CAS  Google Scholar 

  16. Bruce, A. G., Atkins, J. F., Wills, N., Uhlenbeck, O. C. & Gesteland, R. F. Proc. natn. Acad. Sci. U.S.A. 79, 7127–7131 (1982).

    Article  ADS  CAS  Google Scholar 

  17. Gilmore, R. A., Stewart, J. W. & Sherman, F. J. molec. Biol. 61, 157–173 (1971).

    Article  CAS  Google Scholar 

  18. Capecchi, M. R., Hughes, J. H. & Wahl, G. M. Cell 6, 269–277 (1975).

    Article  CAS  Google Scholar 

  19. Roberts, B. R. & Paterson, B. M. Proc. natn. Acad. Sci. U.S.A. 70, 2330–2334 (1973).

    Article  ADS  CAS  Google Scholar 

  20. Thompson, R. C., Cline, S. W. & Yarus, M. in Interaction of Translational and Transcriptional Controls in the Regulation of Gene Expression (eds Grunberg-Manago, M. & Safer, B.) 189–202 (Elsevier, Amsterdam, 1982).

    Book  Google Scholar 

  21. Sprinzl, M., Grueter, F., Spelzhaus, A. & Gauss, D. H. Nucleic Acids Res. 8, r1–r22 (1980).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Bare, L., Bruce, A., Gesteland, R. et al. Uridine-33 in yeast tRNA not essential for amber suppression. Nature 305, 554–556 (1983). https://doi.org/10.1038/305554a0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/305554a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing