Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Complete nucleotide sequence of an immunoglobulin VH gene homologue from Caiman, a phylogenetically ancient reptile

Abstract

Immunoglobulin variable (V) gene regions1–10 typify extensive multigenic families in terms of overall size, chromosomal arrangement and presence of large numbers of apparent pseudogenes. A unique mechanism of somatic reorganization involving recombination of VH, D and JH or VL and JL segments accompanies the differentiation of lymphoid cells5,6,11,12 and together with somatic mutation6,13,14 and other types of recombination15,16 accounts for V-region diversity. Although these processes have been well characterized in higher mammals, little is known concerning their origin and diversification during phylogenetic time. Previously, we described the blot-hybridization characteristics of murine VHIII probes with restriction enzyme-digested genomic DNA isolated from several phylogenetically critical species, including Caiman crocodylus, a modern representative of an ancient reptilian subclass17. Here we have used a murine probe, S107V, to select homologous clones from a library of Caiman genomic DNA constructed in a λ bacteriophage. The complete nucleotide sequence of a Caiman gene homologous to the murine VH gene and its adjacent 5′ and 3′ region is described. Comparison of the sequence with mammalian prototypes shows evidence of considerable organizational and structural homology extending outside the presumed VH-coding region and including elements believed to be involved in somatic recombination. Inferences about the evolution of this multigenic family can now be extended to the level of phylogenetic class.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Seidman, J. G., Leder, A., Nau, M., Norman, B. & Leder, P. Science 202, 11–17 (1978).

    Article  ADS  CAS  Google Scholar 

  2. Selsing, E. & Storb, U. Nucleic Acids Res. 9, 5725–5735 (1981).

    Article  CAS  Google Scholar 

  3. Rabbitts, T. H., Matthyssens, G. & Hamlyn, P. H. Nature 284, 238–243 (1980).

    Article  ADS  CAS  Google Scholar 

  4. Kemp, D. J., Cory, S. & Adams, J. M. Proc. natn. Acad. Sci. U.S.A. 76, 4627–4631 (1979).

    Article  ADS  CAS  Google Scholar 

  5. Early, P., Huang, H., Davis, M., Calame, K. & Hood, L. Cell 19, 981–992 (1980).

    Article  CAS  Google Scholar 

  6. Bothwell, A. L. M. et al. Cell 24, 625–637 (1981).

    Article  CAS  Google Scholar 

  7. Matthyssens, G. & Rabbitts, T. H. Proc. natn. Acad. Sci. U.S.A. 77, 6561–6565 (1980).

    Article  ADS  CAS  Google Scholar 

  8. Kemp, D. J. et al. J. molec. appl. Genet. 1, 246–261 (1981).

    Google Scholar 

  9. Givol, D. et al. Nature 292, 426–430 (1981).

    Article  ADS  CAS  Google Scholar 

  10. Rechavi, G. et al. Proc. natnAcad. Sci. U.S.A. 79, 4405 (1982).

    Article  ADS  CAS  Google Scholar 

  11. Sakano, H., Maki, R., Kurosawa, Y., Roeder, W. & Tonegawa, S. Nature 286, 676–683 (1980).

    Article  ADS  CAS  Google Scholar 

  12. Kataoka, T., Nikaido, T., Miyata, T., Moriwaki, K. & Honjo, T. J. biol. Chem. 257, 277–285 (1982).

    CAS  PubMed  Google Scholar 

  13. Crews, S., Griffin, J., Huang, H., Calame, K. & Hood, L. Cell 25, 59–66 (1981).

    Article  CAS  Google Scholar 

  14. Kim, S., Davis, M., Sinn, E., Patten, P. & Hood, L. Cell 27, 573–581 (1981).

    Article  CAS  Google Scholar 

  15. Siebenlist, U., Ravetch, J. V., Korsmeyer, S., Waldmann, T. & Leder, P. Nature 294, 631–635 (1981).

    Article  ADS  CAS  Google Scholar 

  16. Alt, F. W. & Baltimore, D. Proc. natn. Acad. Sci. U.S.A. 79, 4118–4122 (1982).

    Article  ADS  CAS  Google Scholar 

  17. Litman, G. W., Berger, L. & Jahn, C. L. Nucleic Acids Res. 10, 3371–3380 (1982).

    Article  CAS  Google Scholar 

  18. Loenen, W. A. M. & Brammar, W. J. Gene 20, 249–259 (1980).

    Article  Google Scholar 

  19. Guo, L.-H. & Wu, R. Nucleic Acids Res. 10, 2065–2084 (1982).

    Article  CAS  Google Scholar 

  20. Sellers, P. H. SIAM J. appl. Math. 26, 787–793 (1974).

    Article  MathSciNet  Google Scholar 

  21. Sellers, P. H. J. Algorithms 1, 359–373 (1980).

    Article  MathSciNet  Google Scholar 

  22. Erickson, B. W. & Sellers, P. H. in Time Warps, String Edits, and Macromolecules (eds Kruskal, J. B. & Sankoff, D.) (Addison-Wesley, Reading, Massachusetts, in the press).

  23. Shaw, M. W., Lamb, R. A., Erickson, B. W., Briedis, D. J. & Choppin, P. W. Proc. natn. Acad. Sci. U.S.A. 79, 6817–6821 (1982).

    Article  ADS  CAS  Google Scholar 

  24. Segal, D. M. et al. Proc. natn. Acad. Sci. U.S.A. 71, 4298–4302 (1974).

    Article  ADS  CAS  Google Scholar 

  25. Erickson, B. W. & Krieger, D. E. in Antibodies in Human Diagnosis and Therapy (eds Haber, E. & Krause, R. M.) 159–190 (Raven, New York, 1977).

    Google Scholar 

  26. Kabat, E. A., Wu, T. T. & Bilofsky, H. Sequences of Immunoglobulin Chains (Publ. 80-2008, NIH, Bethesda, Maryland, 1979).

    Google Scholar 

  27. Litman, G. W., Erickson, B. W., Lederman, L. & Mäkelä, O. Molec. cell. Biochem. 45, 49–57 (1982).

    Article  CAS  Google Scholar 

  28. Karn, J., Brenner, S., Barnett, L. & Cesareni, G. Proc. natn. Acad. Sci. U.S.A. 77, 5172–5176 (1980).

    Article  ADS  CAS  Google Scholar 

  29. Maxam, A. M. & Gilbert, W. Meth. Enzym. 65, 499–560 (1980).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Litman, G., Berger, L., Murphy, K. et al. Complete nucleotide sequence of an immunoglobulin VH gene homologue from Caiman, a phylogenetically ancient reptile. Nature 303, 349–352 (1983). https://doi.org/10.1038/303349a0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/303349a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing