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| Open AccessPeptide Markers for Rapid Detection of KPC Carbapenemase by LC-MS/MS
- Honghui Wang
- , Steven K. Drake
- & John P. Dekker
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| Open AccessA large-scale benchmark of gene prioritization methods
- Dimitri Guala
- & Erik L. L. Sonnhammer
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| Open AccessUnified Alignment of Protein-Protein Interaction Networks
- Noël Malod-Dognin
- , Kristina Ban
- & Nataša Pržulj
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| Open AccessComplete fold annotation of the human proteome using a novel structural feature space
- Sarah A. Middleton
- , Joseph Illuminati
- & Junhyong Kim
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| Open AccessSWATH label-free proteomics analyses revealed the roles of oxidative stress and antioxidant defensing system in sclerotia formation of Polyporus umbellatus
- Bing Li
- , Xiaofang Tian
- & Shunxing Guo
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| Open AccessExploring the dark foldable proteome by considering hydrophobic amino acids topology
- Tristan Bitard-Feildel
- & Isabelle Callebaut
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| Open AccessGPS-PAIL: prediction of lysine acetyltransferase-specific modification sites from protein sequences
- Wankun Deng
- , Chenwei Wang
- & Yu Xue
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| Open AccessInteractomic analysis of REST/NRSF and implications of its functional links with the transcription suppressor TRIM28 during neuronal differentiation
- Namgyu Lee
- , Sung Jin Park
- & Kwan Yong Choi
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| Open AccessMal-Lys: prediction of lysine malonylation sites in proteins integrated sequence-based features with mRMR feature selection
- Yan Xu
- , Ya-Xin Ding
- & Yu Xue
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| Open AccessProteomic profile of the Bradysia odoriphaga in response to the microbial secondary metabolite benzothiazole
- Yunhe Zhao
- , Kaidi Cui
- & Wei Mu
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| Open AccessMulti-label ℓ2-regularized logistic regression for predicting activation/inhibition relationships in human protein-protein interaction networks
- Suyu Mei
- & Kun Zhang
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| Open AccessStructural elucidation of estrus urinary lipocalin protein (EULP) and evaluating binding affinity with pheromones using molecular docking and fluorescence study
- Durairaj Rajesh
- , Subramanian Muthukumar
- & Govindaraju Archunan
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| Open AccessProteomic and phosphoproteomic analysis of renal cortex in a salt-load rat model of advanced kidney damage
- Shaoling Jiang
- , Hanchang He
- & Aiqing Li
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| Open AccessGenome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions
- Joana C. Silva
- , Emmanuel Cornillot
- & Choukri Ben Mamoun
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| Open AccessPrediction of phosphothreonine sites in human proteins by fusing different features
- Ya-Wei Zhao
- , Hong-Yan Lai
- & Hao Lin
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| Open AccessIdentification of gefitinib off-targets using a structure-based systems biology approach; their validation with reverse docking and retrospective data mining
- Nidhi Verma
- , Amit Kumar Rai
- & Pankaj Goyal
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| Open AccessAcross intra-mammalian stages of the liver f luke Fasciola hepatica: a proteomic study
- Lucía Sánchez Di Maggio
- , Lucas Tirloni
- & Patricia Berasain
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| Open AccessComplete De Novo Assembly of Monoclonal Antibody Sequences
- Ngoc Hieu Tran
- , M. Ziaur Rahman
- & Ming Li
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| Open AccessComputational discovery of Epstein-Barr virus targeted human genes and signalling pathways
- Suyu Mei
- & Kun Zhang
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| Open AccessA Bayesian algorithm for detecting differentially expressed proteins and its application in breast cancer research
- Tapesh Santra
- & Eleni Ioanna Delatola
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| Open AccessIDH-mutant glioma specific association of rs55705857 located at 8q24.21 involves MYC deregulation
- Yavuz Oktay
- , Ege Ülgen
- & Koray Özduman
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| Open AccessPhosphoprotein network analysis of white adipose tissues unveils deregulated pathways in response to high-fat diet
- Asfa Alli Shaik
- , Beiying Qiu
- & Vinay Tergaonkar
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| Open AccessProteome-wide search for functional motifs altered in tumors: Prediction of nuclear export signals inactivated by cancer-related mutations
- Gorka Prieto
- , Asier Fullaondo
- & Jose A. Rodríguez
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| Open AccessSurface energetics and protein-protein interactions: analysis and mechanistic implications
- Claudio Peri
- , Giulia Morra
- & Giorgio Colombo
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| Open AccessDephosSite: a machine learning approach for discovering phosphotase-specific dephosphorylation sites
- Xiaofeng Wang
- , Renxiang Yan
- & Jiangning Song
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| Open AccessCrysalis: an integrated server for computational analysis and design of protein crystallization
- Huilin Wang
- , Liubin Feng
- & Jiangning Song
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| Open AccessTexture analysis in gel electrophoresis images using an integrative kernel-based approach
- Carlos Fernandez-Lozano
- , Jose A. Seoane
- & Colin Campbell
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| Open AccessAn assessment of the amount of untapped fold level novelty in under-sampled areas of the tree of life
- Daniel Barry Roche
- & Thomas Brüls
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| Open AccessGraph theoretic network analysis reveals protein pathways underlying cell death following neurotropic viral infection
- Sourish Ghosh
- , G. Vinodh Kumar
- & Arpan Banerjee
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| Open AccessA peptide identification-free, genome sequence-independent shotgun proteomics workflow for strain-level bacterial differentiation
- Wenguang Shao
- , Min Zhang
- & Stanley C. K. Lau
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| Open AccessCoMOGrad and PHOG: From Computer Vision to Fast and Accurate Protein Tertiary Structure Retrieval
- Rezaul Karim
- , Mohd. Momin Al Aziz
- & Salman Rakin
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| Open AccessRegulation of microtubule dynamics by DIAPH3 influences amoeboid tumor cell mechanics and sensitivity to taxanes
- Samantha Morley
- , Sungyong You
- & Michael R. Freeman
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| Open AccessGreedyPlus: An Algorithm for the Alignment of Interface Interaction Networks
- Brian Law
- & Gary D. Bader
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| Open AccessRice_Phospho 1.0: a new rice-specific SVM predictor for protein phosphorylation sites
- Shoukai Lin
- , Qi Song
- & Huaqin He
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| Open AccessCompetition-cooperation relationship networks characterize the competition and cooperation between proteins
- Hong Li
- , Yuan Zhou
- & Ziding Zhang
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| Open AccessFunctional Identification of Target by Expression Proteomics (FITExP) reveals protein targets and highlights mechanisms of action of small molecule drugs
- Alexey Chernobrovkin
- , Consuelo Marin-Vicente
- & Roman A. Zubarev
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| Open AccessBiased random walk model for the prioritization of drug resistance associated proteins
- Hao Guo
- , Jiaqiang Dong
- & Daiming Fan
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| Open AccessA novel one-class SVM based negative data sampling method for reconstructing proteome-wide HTLV-human protein interaction networks
- Suyu Mei
- & Hao Zhu
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| Open AccessSystematic analysis of the in situ crosstalk of tyrosine modifications reveals no additional natural selection on multiply modified residues
- Zhicheng Pan
- , Zexian Liu
- & Yu Xue
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| Open AccessCharacterizing the pocketome of Mycobacterium tuberculosis and application in rationalizing polypharmacological target selection
- Praveen Anand
- & Nagasuma Chandra
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| Open AccessAccurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features
- Yuan Li
- , Mingjun Wang
- & Jiangning Song
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| Open AccessFunctional Genomics Evidence Unearths New Moonlighting Roles of Outer Ring Coat Nucleoporins
- Katerina R. Katsani
- , Manuel Irimia
- & Christos A. Ouzounis
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| Open AccessA comparative analysis of computational approaches and algorithms for protein subcomplex identification
- Nazar Zaki
- & Antonio Mora
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| Open AccessSoluble expression of proteins correlates with a lack of positively-charged surface
- Pedro Chan
- , Robin A. Curtis
- & Jim Warwicker
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| Open AccessThe Network Organization of Cancer-associated Protein Complexes in Human Tissues
- Jing Zhao
- , Sang Hoon Lee
- & Petter Holme
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| Open AccessSpatial and functional organization of mitochondrial protein network
- Jae-Seong Yang
- , Jinho Kim
- & Sanguk Kim