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| Open AccessSystematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types
- Yudan Zeng
- , Dongtao Lin
- & Yongming Cai
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| Open AccessA computational method for predicting nucleocapsid protein in retroviruses
- Manyun Guo
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| Open AccessA novel graph convolutional neural network for predicting interaction sites on protein kinase inhibitors in phosphorylation
- Feiqi Wang
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| Open AccessProtein embeddings and deep learning predict binding residues for various ligand classes
- Maria Littmann
- , Michael Heinzinger
- & Burkhard Rost
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| Open Accessβ-elimination of hyaluronate by red king crab hyaluronidase
- Dmitrii Sliadovskii
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- & Evgeny Sogorin
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| Open AccessAn enhanced variant effect predictor based on a deep generative model and the Born-Again Networks
- Ha Young Kim
- , Woosung Jeon
- & Dongsup Kim
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| Open AccessComputational identification of multiple lysine PTM sites by analyzing the instance hardness and feature importance
- Sabit Ahmed
- , Afrida Rahman
- & S. M. Shovan
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| Open AccessGenome-wide comparative analyses of GATA transcription factors among seven Populus genomes
- Mangi Kim
- , Hong Xi
- & Jongsun Park
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| Open AccessStudying the effect of alpha-synuclein and Parkinson’s disease linked mutants on inter pathway connectivities
- Sagnik Sen
- , Ashmita Dey
- & Ujjwal Maulik
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| Open AccessAnalysis of the dark proteome of Chandipura virus reveals maximum propensity for intrinsic disorder in phosphoprotein
- Nishi R. Sharma
- , Kundlik Gadhave
- & Rajanish Giri
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| Open AccessExoproteomic analysis of two MLST clade 2 strains of Clostridioides difficile from Latin America reveal close similarities
- Dvison de Melo Pacífico
- , Cecília Leite Costa
- & Gerly Anne de Castro Brito
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| Open AccessNatural variants in SARS-CoV-2 Spike protein pinpoint structural and functional hotspots with implications for prophylaxis and therapeutic strategies
- Suman Pokhrel
- , Benjamin R. Kraemer
- & Daria Mochly-Rosen
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| Open AccessProtein residue network analysis reveals fundamental properties of the human coagulation factor VIII
- Tiago J. S. Lopes
- , Ricardo Rios
- & Rodrigo F. Mello
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| Open AccessContinual proteomic divergence of HepG2 cells as a consequence of long-term spheroid culture
- Andrea Antonio Ellero
- , Iman van den Bout
- & Tracey Hurrell
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| Open AccessPredicting MHC I restricted T cell epitopes in mice with NAP-CNB, a novel online tool
- Carlos Wert-Carvajal
- , Rubén Sánchez-García
- & Arrate Muñoz-Barrutia
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| Open AccessHomopeptide and homocodon levels across fungi are coupled to GC/AT-bias and intrinsic disorder, with unique behaviours for some amino acids
- Yue Wang
- & Paul M. Harrison
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| Open AccessAn efficient alpha helix model and simulation framework for stationary electrostatic interaction force estimation
- Guy G. Butcher
- , William S. Harwin
- & Chris I. Jones
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| Open AccessMaster Blaster: an approach to sensitive identification of remotely related proteins
- Chintalapati Janaki
- , Venkatraman S. Gowri
- & Narayanaswamy Srinivasan
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| Open AccessCoevolution underlies GPCR-G protein selectivity and functionality
- Min Jae Seo
- , Joongyu Heo
- & Wookyung Yu
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| Open AccessPrediction of Streptococcus uberis clinical mastitis treatment success in dairy herds by means of mass spectrometry and machine-learning
- Alexandre Maciel-Guerra
- , Necati Esener
- & Tania Dottorini
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| Open AccessTrivial and nontrivial error sources account for misidentification of protein partners in mutual information approaches
- Camila Pontes
- , Miguel Andrade
- & Werner Treptow
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| Open AccessExploring targeting peptide-shell interactions in encapsulin nanocompartments
- Wiggert J. Altenburg
- , Nathan Rollins
- & Tobias W. Giessen
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| Open AccessIn silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19
- Isabelle Q. Phan
- , Sandhya Subramanian
- & Wesley C. Van Voorhis
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| Open AccessStructural design principles for specific ultra-high affinity interactions between colicins/pyocins and immunity proteins
- Avital Shushan
- & Mickey Kosloff
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| Open AccessIntrinsic disorder in protein domains contributes to both organism complexity and clade-specific functions
- Chao Gao
- , Chong Ma
- & Dong Yang
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| Open AccessProteome-wide profiling and mapping of post translational modifications in human hearts
- Navratan Bagwan
- , Henrik H. El Ali
- & Alicia Lundby
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| Open AccessStructural insights and evaluation of the potential impact of missense variants on the interactions of SLIT2 with ROBO1/4 in cancer progression
- Debmalya Sengupta
- , Gairika Bhattacharya
- & Mainak Sengupta
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| Open AccessIdentification and motif analyses of candidate nonreceptor olfactory genes of Dendroctonus adjunctus Blandford (Coleoptera: Curculionidae) from the head transcriptome
- Brenda Torres-Huerta
- , Obdulia L. Segura-León
- & Héctor González-Hernández
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| Open AccessCharacterization and identification of lysine crotonylation sites based on machine learning method on both plant and mammalian
- Rulan Wang
- , Zhuo Wang
- & Tzong-Yi Lee
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| Open AccessPredicting antibody affinity changes upon mutations by combining multiple predictors
- Yoichi Kurumida
- , Yutaka Saito
- & Tomoshi Kameda
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| Open AccessEpitope similarity cannot explain the pre-formed T cell immunity towards structural SARS-CoV-2 proteins
- Ulrik Stervbo
- , Sven Rahmann
- & Nina Babel
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| Open AccessAutomatic construction of molecular similarity networks for visual graph mining in chemical space of bioactive peptides: an unsupervised learning approach
- Longendri Aguilera-Mendoza
- , Yovani Marrero-Ponce
- & Carlos A. Brizuela
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| Open AccessPrediction of rifampicin resistance beyond the RRDR using structure-based machine learning approaches
- Stephanie Portelli
- , Yoochan Myung
- & David B. Ascher
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| Open AccessDistribution of disease-causing germline mutations in coiled-coils implies an important role of their N-terminal region
- Zsofia E. Kalman
- , Bálint Mészáros
- & Laszlo Dobson
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| Open AccessHot spot profiles of SARS-CoV-2 and human ACE2 receptor protein protein interaction obtained by density functional tight binding fragment molecular orbital method
- Hocheol Lim
- , Ayoung Baek
- & Kyoung Tai No
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| Open AccessMachine learning-guided discovery and design of non-hemolytic peptides
- Fabien Plisson
- , Obed Ramírez-Sánchez
- & Cristina Martínez-Hernández
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| Open AccessThe E3 ubiquitin-protein ligase MDM2 is a novel interactor of the von Hippel–Lindau tumor suppressor
- Antonella Falconieri
- , Giovanni Minervini
- & Silvio C. E. Tosatto
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| Open AccessEffect of sequence padding on the performance of deep learning models in archaeal protein functional prediction
- Angela Lopez-del Rio
- , Maria Martin
- & Rabie Saidi
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| Open AccessAntibody-protein binding and conformational changes: identifying allosteric signalling pathways to engineer a better effector response
- Mohammed M. Al Qaraghuli
- , Karina Kubiak-Ossowska
- & Paul A. Mulheran
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| Open AccessIdentification of novel molecular determinants of co-receptor usage in HIV-1 subtype F V3 envelope sequences
- Maximiliano Distefano
- , Esteban Lanzarotti
- & Paula Aulicino
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| Open AccessThe structural basis of the genetic code: amino acid recognition by aminoacyl-tRNA synthetases
- Florian Kaiser
- , Sarah Krautwurst
- & Michael Schroeder
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| Open AccessStudying O2 pathways in [NiFe]- and [NiFeSe]-hydrogenases
- Tiago M. Barbosa
- , Carla S. A. Baltazar
- & Cláudio M. Soares
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| Open AccessPATH - Prediction of Amyloidogenicity by Threading and Machine Learning
- Jakub W. Wojciechowski
- & Małgorzata Kotulska
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| Open AccessStructural basis for substrate and product recognition in human phosphoglucomutase-1 (PGM1) isoform 2, a member of the α-d-phosphohexomutase superfamily
- Paul Hoff Backe
- , Jon K. Laerdahl
- & Magnar Bjørås
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| Open AccessImproving detection of protein-ligand binding sites with 3D segmentation
- Marta M. Stepniewska-Dziubinska
- , Piotr Zielenkiewicz
- & Pawel Siedlecki
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| Open AccessStructural and evolutionary analyses of the Plasmodium falciparum chloroquine resistance transporter
- Romain Coppée
- , Audrey Sabbagh
- & Jérôme Clain
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| Open AccessT-Cell Receptor Variable β Domains Rigidify During Affinity Maturation
- Monica L. Fernández-Quintero
- , Clarissa A. Seidler
- & Klaus R. Liedl
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Article
| Open AccessEvolved Fusarium oxysporum laccase expressed in Saccharomyces cerevisiae
- Natalia Kwiatos
- , Marzena Jędrzejczak-Krzepkowska
- & Stanisław Bielecki
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| Open AccessComputational modelling of wet adhesive mussel foot proteins (Bivalvia): Insights into the evolutionary convolution in diverse perspectives
- P. P. Anand
- & Y. Shibu Vardhanan