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| Open AccessUnveiling the presence of biosynthetic pathways for bioactive compounds in the Thalassiosira rotula transcriptome
- Valeria Di Dato
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- & Giovanna Romano
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| Open AccessMilk proteome from in silico data aggregation allows the identification of putative biomarkers of negative energy balance in dairy cows
- Mylène Delosière
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| Open AccessComparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum
- Bart T. L. H. van de Vossenberg
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| Open AccessExploratory Gene Ontology Analysis with Interactive Visualization
- Junjie Zhu
- , Qian Zhao
- & Chiara Sabatti
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| Open AccessDEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks
- Ahmet Sureyya Rifaioglu
- , Tunca Doğan
- & Volkan Atalay
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| Open AccessCommon patterns of gene regulation associated with Cesarean section and the development of islet autoimmunity – indications of immune cell activation
- M. Laimighofer
- , R. Lickert
- & J. Krumsiek
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| Open AccessMeta-analysis suggests evidence of novel stress-related pathway components in Orsay virus - Caenorhabditis elegans viral model
- Priyanka Mishra
- , Jessica Ngo
- & Frederic Pio
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| Open AccessQuantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies
- Sarah M. Alghamdi
- , Beth A. Sundberg
- & Robert Hoehndorf
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| Open AccessProbabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)
- Ehsaneddin Asgari
- , Alice C. McHardy
- & Mohammad R. K. Mofrad
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| Open AccessDevelopment of Orthogonal Linear Separation Analysis (OLSA) to Decompose Drug Effects into Basic Components
- Tadahaya Mizuno
- , Setsuo Kinoshita
- & Hiroyuki Kusuhara
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| Open AccessA distinctive DNA methylation pattern in insufficient sleep
- Alexandra Lahtinen
- , Sampsa Puttonen
- & Tiina Paunio
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| Open AccessNetwork Analysis Reveals TNF as a Major Hub of Reactive Inflammation Following Spinal Cord Injury
- Weiping Zhu
- , Xuning Chen
- & Kan Jin
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| Open AccessSystems Biology Approach to Identify Novel Genomic Determinants for Pancreatic Cancer Pathogenesis
- Indu Khatri
- , Koelina Ganguly
- & Manoj K. Bhasin
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| Open AccessGOGO: An improved algorithm to measure the semantic similarity between gene ontology terms
- Chenguang Zhao
- & Zheng Wang
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| Open AccessTranscriptomics and co-expression networks reveal tissue-specific responses and regulatory hubs under mild and severe drought in papaya (Carica papaya L.)
- Gamboa-Tuz Samuel David
- , Pereira-Santana Alejandro
- & Rodríguez-Zapata Luis Carlos
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| Open AccessCells with stemness features are generated from in vitro transformed human fibroblasts
- Bartolo Bono
- , Paola Ostano
- & Chiara Mondello
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| Open AccessHypercapnia Alters Expression of Immune Response, Nucleosome Assembly and Lipid Metabolism Genes in Differentiated Human Bronchial Epithelial Cells
- S. Marina Casalino-Matsuda
- , Naizhen Wang
- & Peter H. S. Sporn
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| Open AccessCEA: Combination-based gene set functional enrichment analysis
- Duanchen Sun
- , Yinliang Liu
- & Ling-Yun Wu
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| Open AccessGene Ontology Enrichment Improves Performances of Functional Similarity of Genes
- Wenting Liu
- , Jianjun Liu
- & Jagath C. Rajapakse
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| Open AccessExplaining cancer type specific mutations with transcriptomic and epigenomic features in normal tissues
- Khong-Loon Tiong
- & Chen-Hsiang Yeang
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| Open AccessGOATOOLS: A Python library for Gene Ontology analyses
- D. V. Klopfenstein
- , Liangsheng Zhang
- & Haibao Tang
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| Open AccessIndependent losses of a xenobiotic receptor across teleost evolution
- Marta Eide
- , Halfdan Rydbeck
- & Odd A. Karlsen
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| Open AccessEvolutionary and expression analysis of CAMTA gene family in Nicotiana tabacum yielded insights into their origin, expansion and stress responses
- Kaleem U. Kakar
- , Zarqa Nawaz
- & Xueliang Ren
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| Open AccessIdentification of pathways and genes associated with synovitis in osteoarthritis using bioinformatics analyses
- Hui Huang
- , Jiaxuan Zheng
- & Jianning Zhao
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| Open AccessTranscriptomics insights into the genetic regulation of root apical meristem exhaustion and determinate primary root growth in Pachycereus pringlei (Cactaceae)
- Gustavo Rodriguez-Alonso
- , Marta Matvienko
- & Svetlana Shishkova
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| Open AccessA multi-step transcriptional cascade underlies vascular regeneration
in vivo - Aditya S. Shirali
- , Milagros C. Romay
- & M. Luisa Iruela-Arispe
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| Open AccessMTGO: PPI Network Analysis Via Topological and Functional Module Identification
- Danila Vella
- , Simone Marini
- & Riccardo Bellazzi
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| Open AccessARE-mediated decay controls gene expression and cellular metabolism upon oxygen variations
- Bérengère de Toeuf
- , Romuald Soin
- & Cyril Gueydan
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| Open AccessInterpretation of biological experiments changes with evolution of the Gene Ontology and its annotations
- Aurelie Tomczak
- , Jonathan M. Mortensen
- & Purvesh Khatri
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| Open AccessGlobal Gene Expression Analysis in an in vitro Fibroblast Model of Idiopathic Pulmonary Fibrosis Reveals Potential Role for CXCL14/CXCR4
- Luis R. Rodriguez
- , Margaret Emblom-Callahan
- & Geraldine M. Grant
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| Open AccessIdentification of juvenility-associated genes in the mouse hepatocytes and cardiomyocytes
- Faidruz Azura Jam
- , Yosuke Kadota
- & Masaki Mori
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| Open AccessSystems Analysis of the Liver Transcriptome in Adult Male Zebrafish Exposed to the Plasticizer (2-Ethylhexyl) Phthalate (DEHP)
- Matthew Huff
- , Willian A. da Silveira
- & Gary Hardiman
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| Open AccessComparative analyses of co-evolving host-parasite associations reveal unique gene expression patterns underlying slavemaker raiding and host defensive phenotypes
- Austin Alleman
- , Barbara Feldmeyer
- & Susanne Foitzik
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| Open AccessGene annotation bias impedes biomedical research
- Winston A. Haynes
- , Aurelie Tomczak
- & Purvesh Khatri
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| Open AccessA flexible ontology for inference of emergent whole cell function from relationships between subcellular processes
- Jens Hansen
- , David Meretzky
- & Ravi Iyengar
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| Open AccessTranscriptomic profiling of the human brain reveals that altered synaptic gene expression is associated with chronological aging
- Allissa A. Dillman
- , Elisa Majounie
- & Mark R. Cookson
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| Open AccessRNA-seq analysis of the kidneys of broiler chickens fed diets containing different concentrations of calcium
- Woncheoul Park
- , Deivendran Rengaraj
- & Ki-Duk Song
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| Open AccessFunctionAnnotator, a versatile and efficient web tool for non-model organism annotation
- Ting-Wen Chen
- , Ruei-Chi Gan
- & Petrus Tang
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| Open AccessCerium oxide nanoparticles inhibit differentiation of neural stem cells
- Anda R. Gliga
- , Karin Edoff
- & Bengt Fadeel
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| Open AccessTranscriptome-based network analysis reveals renal cell type-specific dysregulation of hypoxia-associated transcripts
- Natallia Shved
- , Gregor Warsow
- & Maja T. Lindenmeyer
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| Open AccessIdentifying the miRNA signature associated with survival time in patients with lung adenocarcinoma using miRNA expression profiles
- Srinivasulu Yerukala Sathipati
- & Shinn-Ying Ho
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| Open AccessIn silico analyses of conservational, functional and phylogenetic distribution of the LuxI and LuxR homologs in Gram-positive bacteria
- Akanksha Rajput
- & Manoj Kumar
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| Open AccessCREB Regulates Distinct Adaptive Transcriptional Programs in Astrocytes and Neurons
- Luis Pardo
- , Luis Miguel Valor
- & Elena Galea
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| Open AccessDraft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence
- M. A. Iquebal
- , Rukam S. Tomar
- & Dinesh Kumar
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| Open AccessA Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq
- Bin Li
- , Tao Qing
- & Leming Shi
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| Open AccessIdentification of oral cancer related candidate genes by integrating protein-protein interactions, gene ontology, pathway analysis and immunohistochemistry
- Ravindra Kumar
- , Sabindra K. Samal
- & Anshuman Dixit
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| Open AccessIdentification of exosomes and its signature miRNAs of male and female
Cynoglossus semilaevis - Zhanpeng Sun
- , Tong Hao
- & Jinze Tian
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| Open AccessExploring Approaches for Detecting Protein Functional Similarity within an Orthology-based Framework
- Christian X. Weichenberger
- , Antonia Palermo
- & Francisco S. Domingues
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| Open AccessGenome-wide association analysis identifies loci governing mercury accumulation in maize
- Zhan Zhao
- , Zhongjun Fu
- & Jihua Tang