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| Open AccessIn-depth transcriptomic analysis of human retina reveals molecular mechanisms underlying diabetic retinopathy
- Kolja Becker
- , Holger Klein
- & Remko A. Bakker
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| Open AccessFrom multi-omics integration towards novel genomic interaction networks to identify key cancer cell line characteristics
- T. J. M. Kuijpers
- , J. C. S. Kleinjans
- & D. G. J. Jennen
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| Open AccessIn silico analysis suggests the RNAi-enhancing antibiotic enoxacin as a potential inhibitor of SARS-CoV-2 infection
- Amirhossein Ahmadi
- & Sharif Moradi
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| Open AccessA unified resource and configurable model of the synapse proteome and its role in disease
- Oksana Sorokina
- , Colin Mclean
- & J. Douglas Armstrong
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| Open AccessApplication of regularized regression to identify novel predictors of mortality in a cohort of hemodialysis patients
- Stanislas Werfel
- , Georg Lorenz
- & Christoph Schmaderer
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| Open AccessThe microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature
- Stefano Pirrò
- , Ivana Matic
- & Andrea Galgani
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| Open AccessA small interfering RNA (siRNA) database for SARS-CoV-2
- Inácio Gomes Medeiros
- , André Salim Khayat
- & Jorge Estefano Santana de Souza
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| Open AccessTranscriptome integrated metabolic modeling of carbon assimilation underlying storage root development in cassava
- Ratchaprapa Kamsen
- , Saowalak Kalapanulak
- & Treenut Saithong
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| Open AccessMulti-omic analyses in Abyssinian cats with primary renal amyloid deposits
- Francesca Genova
- , Simona Nonnis
- & Maria Longeri
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| Open AccessMushroom data creation, curation, and simulation to support classification tasks
- Dennis Wagner
- , Dominik Heider
- & Georges Hattab
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| Open AccessSulforaphane ameliorates lipid profile in rodents: an updated systematic review and meta-analysis
- Kaili Du
- , Yuxin Fan
- & Dan Li
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| Open AccessDevelopment of brain atlases for early-to-middle adolescent collision-sport athletes
- Yukai Zou
- , Wenbin Zhu
- & Joseph V. Rispoli
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| Open AccessA 14-gene gemcitabine resistance gene signature is significantly associated with the prognosis of pancreatic cancer patients
- Xing Wei
- , Xiaochong Zhou
- & Chunfang Xu
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| Open AccessComputational modeling reveals a key role for polarized myeloid cells in controlling osteoclast activity during bone injury repair
- Chen Hao Lo
- , Etienne Baratchart
- & Conor C. Lynch
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| Open AccessIdentifying gene expression patterns associated with drug-specific survival in cancer patients
- Bridget Neary
- , Jie Zhou
- & Peng Qiu
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| Open AccessPredictive modeling of clinical trial terminations using feature engineering and embedding learning
- Magdalyn E. Elkin
- & Xingquan Zhu
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| Open AccessMultimodal deep learning models for early detection of Alzheimer’s disease stage
- Janani Venugopalan
- , Li Tong
- & May D. Wang
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| Open AccessMeta-analysis of host transcriptional responses to SARS-CoV-2 infection reveals their manifestation in human tumors
- Fengju Chen
- , Yiqun Zhang
- & Chad J. Creighton
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| Open AccessMulti-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients
- Teresa Rubio
- , Vicente Felipo
- & Carmina Montoliu
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| Open AccessMuSA: a graphical user interface for multi-OMICs data integration in radiogenomic studies
- Mario Zanfardino
- , Rossana Castaldo
- & Monica Franzese
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| Open AccessIntegrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission
- Ivy K. Kombe
- , Charles N. Agoti
- & Graham F. Medley
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| Open AccessMultiplex gene and phenotype network to characterize shared genetic pathways of epilepsy and autism
- Jacqueline Peng
- , Yunyun Zhou
- & Kai Wang
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| Open AccessLongitudinal saliva omics responses to immune perturbation: a case study
- George I. Mias
- , Vikas Vikram Singh
- & Jin He
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| Open AccessArtificial intelligence predicts the immunogenic landscape of SARS-CoV-2 leading to universal blueprints for vaccine designs
- Brandon Malone
- , Boris Simovski
- & Trevor Clancy
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| Open AccessMultimodal fusion with deep neural networks for leveraging CT imaging and electronic health record: a case-study in pulmonary embolism detection
- Shih-Cheng Huang
- , Anuj Pareek
- & Matthew P. Lungren
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| Open AccessCerina: systematic circRNA functional annotation based on integrative analysis of ceRNA interactions
- Jacob Cardenas
- , Uthra Balaji
- & Jinghua Gu
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| Open AccessIntegrative analysis of multi-platform reverse-phase protein array data for the pharmacodynamic assessment of response to targeted therapies
- Adam Byron
- , Stephan Bernhardt
- & Leanne de Koning
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| Open AccessStructural insights and evaluation of the potential impact of missense variants on the interactions of SLIT2 with ROBO1/4 in cancer progression
- Debmalya Sengupta
- , Gairika Bhattacharya
- & Mainak Sengupta
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| Open AccessMicrobe-set enrichment analysis facilitates functional interpretation of microbiome profiling data
- Yan Kou
- , Xiaomin Xu
- & Yan Tan
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| Open AccessInvestigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease
- Mary E. Dolan
- , David P. Hill
- & Judith A. Blake
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| Open AccessImproving existing analysis pipeline to identify and analyze cancer driver genes using multi-omics data
- Quang-Huy Nguyen
- & Duc-Hau Le
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| Open AccessQtlizer: comprehensive QTL annotation of GWAS results
- Matthias Munz
- , Inken Wohlers
- & Jeanette Erdmann
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| Open AccessData integration for prediction of weight loss in randomized controlled dietary trials
- Rikke Linnemann Nielsen
- , Marianne Helenius
- & Ramneek Gupta
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| Open AccessDeep learning approach for predicting functional Z-DNA regions using omics data
- Nazar Beknazarov
- , Seungmin Jin
- & Maria Poptsova
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| Open AccessAnalysis of open chromatin regions in bladder cancer links β-catenin mutations and Wnt signaling with neuronal subtype of bladder cancer
- Aleyna Eray
- , Perihan Yağmur Güneri
- & Serap Erkek-Ozhan
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| Open AccessA systems genomics approach to uncover the molecular properties of cancer genes
- Felix Grassmann
- , Yudi Pawitan
- & Kamila Czene
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| Open AccessPreclinical validation of therapeutic targets predicted by tensor factorization on heterogeneous graphs
- Saee Paliwal
- , Alex de Giorgio
- & Alix MB Lacoste
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| Open AccessRaw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists
- D. N. U. Naranpanawa
- , C. H. W. M. R. B. Chandrasekara
- & A. U. Bandaranayake
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| Open AccessSpatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing
- Travis S. Johnson
- , Shunian Xiang
- & Jie Zhang
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| Open AccessA recursive framework for predicting the time-course of drug sensitivity
- Cheng Qian
- , Amin Emad
- & Nicholas D. Sidiropoulos
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| Open AccessLarge scale, robust, and accurate whole transcriptome profiling from clinical formalin-fixed paraffin-embedded samples
- Yulia Newton
- , Andrew J. Sedgewick
- & Charles Vaske
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| Open AccessTranscriptome analysis of alternative splicing in the pathogen life cycle in human foreskin fibroblasts infected with Trypanosoma cruzi
- Hyeim Jung
- , Seonggyun Han
- & Younghee Lee
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| Open AccessExploring food contents in scientific literature with FoodMine
- Forrest Hooton
- , Giulia Menichetti
- & Albert-László Barabási
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| Open AccessNorthstar enables automatic classification of known and novel cell types from tumor samples
- Fabio Zanini
- , Bojk A. Berghuis
- & Stephen R. Quake
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| Open AccessPathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network
- Abdullah Kahraman
- , Tülay Karakulak
- & Christian von Mering
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| Open AccessIdentification of C3 as a therapeutic target for diabetic nephropathy by bioinformatics analysis
- ShuMei Tang
- , XiuFen Wang
- & XiangCheng Xiao
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| Open AccessA biochemical network modeling of a whole-cell
- Paulo E. P. Burke
- , Claudia B. de L. Campos
- & Marcos G. Quiles
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| Open AccessDynamical gene regulatory networks are tuned by transcriptional autoregulation with microRNA feedback
- Thomas G. Minchington
- , Sam Griffiths-Jones
- & Nancy Papalopulu
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| Open AccessMolecular neuroanatomy of anorexia nervosa
- Derek Howard
- , Priscilla Negraes
- & Leon French